CSPI05G12430 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G12430
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr5: 11626805 .. 11630366 (+)
RNA-Seq Expression	CSPI05G12430
Synteny	CSPI05G12430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTCAACAAACTTTAATTCTTCTGTAATTGGTGTTGCCCATGGGGAGAAACCTGAAAAATTTAGTGGTGTTGATTTCAAACGTTGGCAACAAAAAATGTTGTTTTATCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGATGCTCCCATTTTACCTAAGGGAGAATCTGACAAAGAAAAGCAACTTGCAGTTGATGCATGAAAACATACAATATATCTTTGCAAGAATTACATTTTGAACGTGTTAGACAACACACTATACAATGTGTATAGTAGTGTTGATTCGGCCAAAAATCTATAGACTTCATTAGAGAAGAAGTACAAAACTGAAGTTATTGGTGCAAAGAAATTTATCGTTGAAAAATTTCTAGATTACAAAATGGTGAACTCCAAAACTATAATTAGTCAGGTTCAGGAAATCTAGGCAATTACATGATATACATGCTTAGAATATGACTTTGACTGAGTCTTTTCAGGTTGCATCAATAATTGAAAAATTGCCACCCTCGTGGAAGGACTTCAAAAATTATCTCAAGCAAGTGTACTATGGATAGTACAATAGATCCCAAGGCCAACATTATGGAAAATAGACCACAAAGTAACAAGAAAATGAAGTTTTCTAGTGAAGGTTCAAATAAAAAACCGCAATTCACAAAAAGGTTCAATGGCAAGTGTTACAACTACAACAAAATGGGACATCAATCAAAAGATTGTCGTAAGTCAAAGAACCTTTAGAAAAAACATGTCCAAGCTCATATTACAAAAGTTGATGAAGTATCAGATGTTGTTGCAGATATTGATCTTCGTGCAGTCATTTCAGAATGCAACATGGTGAGCAATTCCAAGGAGTGATGGGTAGACATTGGGGCTACTCATCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCAATTTCTAGTGGAGAACAACTATTTATAGGTAACTTCTCTACTTCAAAGGTTAAGGGACAAGACAAAGTGATTCTTAAGATGACCTTTGGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGTACTTGTATCTGATAAGTTTGAACTTTTCAAGAATGAGATGTACATTGAAAATGGTTATTTGAGCGATGATCTATTTAGATTAAATGTACTCACAGTTGTACTCAAAAGTATTATTAATAAAGTATCTACTTTTGTTTATATTGTTAAGTCATTTGTTTGGCATGGCAGACTAGGACATGTTTATTTTAATTCTTTGCGAAGGCTAATTAATATGAACTTGATTCCAAAATTCACTTTTGACACAAATCATGGATGTGAGATGTGTGTGGAATAAAAAATGACTAAAGCACTTTTTCATTCAACTCAGAGAATTACCAAGCCTTTAGAGTTAATTCATAGTGATATTTGTGACTTGAAATTTGTGCAAACTAAAGGTGGAAAAAAGTACTTTATTACTTTTATCGATGATAGCACAAGATATTGTTATGTTTATCTGCTAAAAAGCAAAGATGAGGCAATTGAAGTGTTTAAGCTTTATAAAAAAGAGGTTAAAAATCAACTTAGCACAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTTGAACAATTTTGTTCAGAACATGACATTATTCACCAAACTACTACTCCTTACTCACCTCAATCCAATGGAATTAGTGAATGAAAAAATCGAACACTTAAGGAAATGATGAACGCAATGCTTATAAGTTCAGGTTTACCCCAAAATTTGTGGGGAGAAGCTTTGTTGACAACAAATTATTTAGGAAACAAAATTCCTCATAAGAAGTCACAAAATATTCCTTATAAAAAGTGGAAAGGAAGAAAACCTTCATGTAAGTTCTTAAAAATGTGGGGGCGCCTAGCAAAGGTTGTCGTGCCTAAATCTAAAATGGTTAAAATCGGACCAAAAACTGTTGATTGCATATTCATTAGTTATGCTAGTAACAGTTGTGCATATCGATTTATAGTTCATAAATAAGATATTTCAGATATACATGCTGATAAAATCATGGAATCAAGGAATGCAACATTCTTTGAGAATGTTTTTCCTCATAAAATGTCTTGTGAAGAAGGTTACAAAAACGTTCGTTTGATGCTATAACAAGCGAATCTCATAATAGATCAAATGTTGAGTTAATGAAGGATGAGGAACTTAGACGAAGTAAAAGGATGAGGATCTCAAAATCATTCGGGCCTGATTTTTTAACTTATTTGTTAGAAAACAAATCTCAAACATTTAAAGAGGCCATGTCCTCTCCCGAAGCTCCATAATGGAAAGAGGCTGTGAATAATGAAATTGAGTCCATTATGCATAACCATACTTGGGAACTAGTTGATCTTCCATTAGGAAGTAAACCACTTGGTTGCAAATGGATTTTCAAACGAAAATTGAAGACCGATGGGTCAATAGATAAATATAAGGCAAAACTTGTCGCTAAAGGTTACAAGCAACAAGGACTTGACTATTTTGATACACACTCACCAGTTACTCGAATTACTTCCATTCGCATGCTCATAACAATATTAGCTTTGCATGGATTTGAGATACATCAAATGGATGTCAAGACAACATTTTTAAACGATGAGTTAGATGAAGAGATCTACATGCAACAACCTGAAGGGTTTGTTTCTTTCGATCAAGAAAAGAAAGTTTGCAAATTAATTAGGTCTGTTTATGGACTAAAACAAGCACCAAAACGATGACATGAAAAATTTGACAATGTGATGATGGCCAATGGGTTTAAAATCAATGAATGTAACAAATGTGTATATGTCAAAAAAGCAATGAGAATGATCATGTCATTGTGTGCTTATATGTTGATGATATGCTAATTATAGGTAGCAATATCAACATTATTAAGAAAACCAAACAAATGTTGGCCAATAAATTTGAGATGAAAGACATGGGTGTCGTAGATGTTATTTTAGGTATCAAAATTTATAGAACCCCACAAGGTTTAGTGCTATCTCAATCACATTATGTTGATAAAATATTGAAGAAATATACAAAACATGGCAATGTGATTGCAAAGACCCCAATTGATGGAAGTCTCCATTTAAGTAAAAATAATGGAAGTAGTATAGCACAATTAGAATATTCTCGCATCATTGGTAGTTTGATGTACATCATGAGTTGTACACGTCCTCATATAGCGTATGTGGTAAGCAAGTTAAGTTGCTATAGAAGTAATCCAGGTCATGATCATTGGAAAGCTATCTTGAGAATTTCGGAATACTTAAAGTATACTAAAAATTATGAATTACACTATACTCGATATCCTGCTGTACTTGAAGGCAATAGTGATGACAATTGGATATCGAGCACTAAAGACTCCAAATCCACCAATGGTTACATTTTTACCCTTGGAGGCGGTGCTGTTTCTTGGAAATCTTTCAAGCAAATATGTATAGTACGATCCACAATGGAATCTGAATTTATAGCTTTAGACAAGGCTGGAGAAGAAGCAGAATGA

mRNA sequence

ATGACTTCAACAAACTTTAATTCTTCTGTAATTGGTGTTGCCCATGGGGAGAAACCTGAAAAATTTAGTGGTGTTGATTTCAAACGTTGGCAACAAAAAATGTTGTTTTATCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGATGCTCCCATTTTACCTAAGGGAGAATCTGACAAAGAAAAGCAACTTGCAAAAAAACATGTCCAAGCTCATATTACAAAAGTTGATGAAGTATCAGATGTTGTTGCAGATATTGATCTTCGTGCAGTCATTTCAGAATGCAACATGGTTAAGGGACAAGACAAAGTGATTCTTAAGATGACCTTTGGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGCTGTGAATAATGAAATTGAGTCCATTATGCATAACCATACTTGGGAACTAGTTGATCTTCCATTAGGAAGTAAACCACTTGGTTGCAAATGGATTTTCAAACGAAAATTGAAGACCGATGGGTCAATAGATAAATATAAGGCAAAACTTGTCGCTAAAGGTTACAAGCAACAAGGACTTGACTATTTTGATACACACTCACCAGTTACTCGAATTACTTCCATTCGCATGCTCATAACAATATTAGCTTTGCATGGATTTGAGATACATCAAATGGATGTCAAGACAACATTTTTAAACGATGAGTTAGATGAAGAGATCTACATGCAACAACCTGAAGGAACCCCACAAGGTTTAGTGCTATCTCAATCACATTATGTTGATAAAATATTGAAGAAATATACAAAACATGGCAATGTGATTGCAAAGACCCCAATTGATGGAAGTCTCCATTTAAGTAAAAATAATGGAAGTAGTATAGCACAATTAGAATATTCTCGCATCATTGGTAGTTTGATGTACATCATGAGTTGTACACGTCCTCATATAGCGTATGTGGTAAGCAAGTTAAGTTGCTATAGAAGTAATCCAGGTCATGATCATTGGAAAGCTATCTTGAGAATTTCGGAATACTTAAAGTATACTAAAAATTATGAATTACACTATACTCGATATCCTGCTGTACTTGAAGGCAATAGTGATGACAATTGGATATCGAGCACTAAAGACTCCAAATCCACCAATGGTTACATTTTTACCCTTGGAGGCGGTGCTGTTTCTTGGAAATCTTTCAAGCAAATATGTATAGTACGATCCACAATGGAATCTGAATTTATAGCTTTAGACAAGGCTGGAGAAGAAGCAGAATGA

Coding sequence (CDS)

ATGACTTCAACAAACTTTAATTCTTCTGTAATTGGTGTTGCCCATGGGGAGAAACCTGAAAAATTTAGTGGTGTTGATTTCAAACGTTGGCAACAAAAAATGTTGTTTTATCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGATGCTCCCATTTTACCTAAGGGAGAATCTGACAAAGAAAAGCAACTTGCAAAAAAACATGTCCAAGCTCATATTACAAAAGTTGATGAAGTATCAGATGTTGTTGCAGATATTGATCTTCGTGCAGTCATTTCAGAATGCAACATGGTTAAGGGACAAGACAAAGTGATTCTTAAGATGACCTTTGGCAAGGAACTCACTCTCAACAATGTGCTTCATGTTCCTGACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAGTAAGAATGGCTTTAAGTTGGCTGTGAATAATGAAATTGAGTCCATTATGCATAACCATACTTGGGAACTAGTTGATCTTCCATTAGGAAGTAAACCACTTGGTTGCAAATGGATTTTCAAACGAAAATTGAAGACCGATGGGTCAATAGATAAATATAAGGCAAAACTTGTCGCTAAAGGTTACAAGCAACAAGGACTTGACTATTTTGATACACACTCACCAGTTACTCGAATTACTTCCATTCGCATGCTCATAACAATATTAGCTTTGCATGGATTTGAGATACATCAAATGGATGTCAAGACAACATTTTTAAACGATGAGTTAGATGAAGAGATCTACATGCAACAACCTGAAGGAACCCCACAAGGTTTAGTGCTATCTCAATCACATTATGTTGATAAAATATTGAAGAAATATACAAAACATGGCAATGTGATTGCAAAGACCCCAATTGATGGAAGTCTCCATTTAAGTAAAAATAATGGAAGTAGTATAGCACAATTAGAATATTCTCGCATCATTGGTAGTTTGATGTACATCATGAGTTGTACACGTCCTCATATAGCGTATGTGGTAAGCAAGTTAAGTTGCTATAGAAGTAATCCAGGTCATGATCATTGGAAAGCTATCTTGAGAATTTCGGAATACTTAAAGTATACTAAAAATTATGAATTACACTATACTCGATATCCTGCTGTACTTGAAGGCAATAGTGATGACAATTGGATATCGAGCACTAAAGACTCCAAATCCACCAATGGTTACATTTTTACCCTTGGAGGCGGTGCTGTTTCTTGGAAATCTTTCAAGCAAATATGTATAGTACGATCCACAATGGAATCTGAATTTATAGCTTTAGACAAGGCTGGAGAAGAAGCAGAATGA

Protein sequence

MTSTNFNSSVIGVAHGEKPEKFSGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPKGESDKEKQLAKKHVQAHITKVDEVSDVVADIDLRAVISECNMVKGQDKVILKMTFGKELTLNNVLHVPDIRKNLVSGSLLSKNGFKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQQGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEGTPQGLVLSQSHYVDKILKKYTKHGNVIAKTPIDGSLHLSKNNGSSIAQLEYSRIIGSLMYIMSCTRPHIAYVVSKLSCYRSNPGHDHWKAILRISEYLKYTKNYELHYTRYPAVLEGNSDDNWISSTKDSKSTNGYIFTLGGGAVSWKSFKQICIVRSTMESEFIALDKAGEEAE*

Homology

[Close]

BLAST of CSPI05G12430 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.7e-50
Identity = 125/411 (30.41%), Postives = 190/411 (46.23%), Query Frame = 0


Query: 138  KNGFKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKG 197
            KN    A+  E+ES+  N T++LV+LP G +PL CKW+FK K   D  + +YKA+LV KG
Sbjct: 823  KNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKG 882

Query: 198  YKQ-QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPE 257
            ++Q +G+D+ +  SPV ++TSIR ++++ A    E+ Q+DVKT FL+ +L+EEIYM+QPE
Sbjct: 883  FEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPE 942

Query: 258  G----------------------------------------------------------- 317
            G                                                           
Sbjct: 943  GFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNF 1002

Query: 318  ---------------------------------------------------TPQGLVLSQ 377
                                                               T + L LSQ
Sbjct: 1003 IILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQ 1062

Query: 378  SHYVDKILKKYTKHGNVIAKTPIDGSLHLSK-------NNGSSIAQLEYSRIIGSLMYIM 431
              Y++++L+++         TP+ G L LSK           ++A++ YS  +GSLMY M
Sbjct: 1063 EKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAM 1122

[Close]

BLAST of CSPI05G12430 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.1e-39
Identity = 118/403 (29.28%), Postives = 175/403 (43.42%), Query Frame = 0


Query: 141  FKLAVNNEIESIMHNHTWELVDLPLGSKPL-GCKWIFKRKLKTDGSIDKYKAKLVAKGYK 200
            ++ A+ +EI + + NHTW+LV  P  S  + GC+WIF +K  +DGS+++YKA+LVAKGY 
Sbjct: 951  WRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYN 1010

Query: 201  QQ-GLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG- 260
            Q+ GLDY +T SPV + TSIR+++ +     + I Q+DV   FL   L +E+YM QP G 
Sbjct: 1011 QRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGF 1070

Query: 261  ------------------------------------------------------------ 320
                                                                        
Sbjct: 1071 VDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYM 1130

Query: 321  ----------------------------------------------TPQGLVLSQSHYVD 380
                                                           PQGL LSQ  Y  
Sbjct: 1131 LVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTL 1190

Query: 381  KILKKYTKHGNVIAKTPIDGSLHLSKNNGSSIAQ-LEYSRIIGSLMYIMSCTRPHIAYVV 433
             +L +          TP+  S  L+ ++G+ +    EY  I+GSL Y ++ TRP ++Y V
Sbjct: 1191 DLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQY-LAFTRPDLSYAV 1250

[Close]

BLAST of CSPI05G12430 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 2.2e-36
Identity = 116/408 (28.43%), Postives = 173/408 (42.40%), Query Frame = 0


Query: 136  LSKNGFKLAVNNEIESIMHNHTWELVDLPLGSKPL-GCKWIFKRKLKTDGSIDKYKAKLV 195
            L    ++ A+ +EI + + NHTW+LV  P     + GC+WIF +K  +DGS+++YKA+LV
Sbjct: 963  LKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLV 1022

Query: 196  AKGYKQQ-GLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQ 255
            AKGY Q+ GLDY +T SPV + TSIR+++ +     + I Q+DV   FL   L +++YM 
Sbjct: 1023 AKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMS 1082

Query: 256  QPEG-------------------------------------------------------- 315
            QP G                                                        
Sbjct: 1083 QPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGK 1142

Query: 316  ---------------------------------------------------TPQGLVLSQ 375
                                                                P GL LSQ
Sbjct: 1143 SIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQ 1202

Query: 376  SHYVDKILKKYTKHGNVIAKTPIDGSLHLSKNNGSSIAQ-LEYSRIIGSLMYIMSCTRPH 433
              Y+  +L +          TP+  S  LS  +G+ +    EY  I+GSL Y ++ TRP 
Sbjct: 1203 RRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQY-LAFTRPD 1262

[Close]

BLAST of CSPI05G12430 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 142.9 bits (359), Expect = 8.5e-33
Identity = 104/406 (25.62%), Postives = 165/406 (40.64%), Query Frame = 0


Query: 138  KNGFKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKG 197
            K+ ++ A+N E+ +   N+TW +   P     +  +W+F  K    G+  +YKA+LVA+G
Sbjct: 903  KSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARG 962

Query: 198  YKQQ-GLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPE 257
            + Q+  +DY +T +PV RI+S R +++++  +  ++HQMDVKT FLN  L EEIYM+ P+
Sbjct: 963  FTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQ 1022

Query: 258  G----------------------------------------------------------- 317
            G                                                           
Sbjct: 1023 GISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI 1082

Query: 318  ------------------------------------------------TPQGLVLSQSHY 377
                                                                + LSQS Y
Sbjct: 1083 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAY 1142

Query: 378  VDKILKKYTKHGNVIAKTPIDGSLHLSKNNGSSIAQLEYSRIIGSLMYIMSCTRPHIAYV 432
            V KIL K+         TP+   ++    N           +IG LMYIM CTRP +   
Sbjct: 1143 VKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTA 1202

[Close]

BLAST of CSPI05G12430 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.5e-21
Identity = 53/125 (42.40%), Postives = 78/125 (62.40%), Query Frame = 0


Query: 308 YSRIIGSLMYIMSCTRPHIAYVVSKLSCYRSNPGHDHWKAILRISEYLKYTKNYELHYTR 367
           Y   +G++MY+M  TRP +A  V  LS + S+P   HW+A+ R+  YL+ T+ Y L +TR
Sbjct: 6   YLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTR 65

Query: 368 Y-PAVLEGNSDDNWISSTKDSKSTNGYIFTLGGGAVSWKSFKQICIVRSTMESEFIALDK 427
              A L G SD +W    +  +ST+GY+F L GG VSW+S KQ  +  S+ E E++AL +
Sbjct: 66  AGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSE 125

Query: 428 AGEEA 432
           A +EA
Sbjct: 126 ATQEA 130

[Close]

BLAST of CSPI05G12430 vs. ExPASy TrEMBL
Match: A0A438JLD2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4174 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 1.7e-116
Identity = 293/790 (37.09%), Postives = 348/790 (44.05%), Query Frame = 0


Query: 11  IGVAHGEKPEKFSGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPK-------------- 70
           I V+ GEKPEKFSG++FKRWQQKMLFYLTTLNLA+FLTEDAP L +              
Sbjct: 33  ISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 71  ------------------------------------------------------------ 130
                                                                       
Sbjct: 93  KHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGTKKFVVGRFLDYKM 152

Query: 131 ----------------------------------------------------GESDKEK- 190
                                                               G+S K K 
Sbjct: 153 VDSKTVNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKK 212

Query: 191 ---------------------------------------QLAKKHVQAHITKVDEVSDVV 250
                                                  +L KK+       +D+++  V
Sbjct: 213 NNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNV 272

Query: 251 ADIDLRAVISECNMV--------------------------------------------- 310
            DIDL AV+S+ N+V                                             
Sbjct: 273 PDIDLTAVVSKVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSE 332

Query: 311 -KGQDKVILKMTFGKELTLNNVLHVPDIRKNLVSGSLLSKNGFKL--------------- 370
            KGQ KVILKMT GKELTL NVL+V +IRKNLVSGSLL+ +GF+L               
Sbjct: 333 IKGQGKVILKMTSGKELTLTNVLYVLEIRKNLVSGSLLNNHGFRLVFESNKFVLSKSGMY 392

Query: 371 ------------------------------------------------------------ 430
                                                                       
Sbjct: 393 VGKCYMSDGMWKLNVMTIIKSNMNKASTSTYMLESSNLWHGEPQTFKEAVNSTEGLMWKE 452

Query: 431 AVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ-QG 433
            + +EI+SI+ NHTWELVDLP G KPL  KWIFKRK+K DGSIDKYKA+LV KGY+Q +G
Sbjct: 453 VIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEG 512

[Close]

BLAST of CSPI05G12430 vs. ExPASy TrEMBL
Match: A0A2N9GPK3 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29231 PE=4 SV=1)

HSP 1 Score: 417.2 bits (1071), Expect = 8.6e-113
Identity = 221/374 (59.09%), Postives = 251/374 (67.11%), Query Frame = 0


Query: 141 FKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ 200
           +K AVN+EIESI+ NHTWELVDLP G KPLG KWIFKRK+K DGSIDKYKA+LV KGYKQ
Sbjct: 359 WKEAVNSEIESILQNHTWELVDLPPGCKPLGYKWIFKRKMKADGSIDKYKARLVVKGYKQ 418

Query: 201 -QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG-- 260
            +G+DYFDT+SPVTRITSIRMLI I AL+  EIHQMDVKT FLN ELDEEIYM+QPEG  
Sbjct: 419 KEGVDYFDTYSPVTRITSIRMLIAIAALYNLEIHQMDVKTAFLNGELDEEIYMEQPEGFI 478

Query: 261 ------------------------------------------------------------ 320
                                                                       
Sbjct: 479 VPGKEKKVCRLVKSLYGLKQAPKQWHEKFDNAMMSNGFRINECDKCVYIKNTTSGYVIVC 538

Query: 321 -------------------TPQGLVLSQSHYVDKILKKYTKHGNVIAKTPIDGSLHLSKN 380
                              T  GLVLSQSHY+ K+L+K+ ++ +   KTPID +LHL+KN
Sbjct: 539 LYVDDMLIMDVILGIKITRTSDGLVLSQSHYIKKVLEKFGRYDDSPVKTPIDVNLHLTKN 598

Query: 381 NGSSIAQLEYSRIIGSLMYIMSCTRPHIAYVVSKLSCYRSNPGHDHWKAILRISEYLKYT 433
            G+ I+QLEYS+IIGSLMYIM+CTRP IAY VSKLS Y SNPG DHWKAI+R+  YLKYT
Sbjct: 599 KGNGISQLEYSQIIGSLMYIMNCTRPDIAYSVSKLSRYTSNPGEDHWKAIVRVLRYLKYT 658

[Close]

BLAST of CSPI05G12430 vs. ExPASy TrEMBL
Match: A0A2N9GPK3 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS29231 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.3e-11
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 94  SECNMVKGQDKVILKMTFGKELTLNNVLHVPDIRKNLVSGSLLSKNGFKLAVNNE 149
           S  + V+G+ KV+LKM+ GKELTLN+VLHVPDIRKNLVSGSLLSKNGF+L   ++
Sbjct: 19  SSTSKVEGKGKVVLKMSSGKELTLNDVLHVPDIRKNLVSGSLLSKNGFQLVFESD 73

HSP 2 Score: 417.2 bits (1071), Expect = 8.6e-113
Identity = 220/374 (58.82%), Postives = 251/374 (67.11%), Query Frame = 0


Query: 141 FKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ 200
           +K AVN+EIESI+ NHTWELVDLP G KPLG KWIFKRK+K DGSIDKYKA+LV KGYKQ
Sbjct: 49  WKEAVNSEIESILQNHTWELVDLPPGCKPLGYKWIFKRKMKADGSIDKYKARLVVKGYKQ 108

Query: 201 -QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG-- 260
            +G+DYFDT+SPVTRITSIRMLI I AL+  EIHQMDVKT FLN ELDEEIYM+QPEG  
Sbjct: 109 KEGVDYFDTYSPVTRITSIRMLIAIAALYNLEIHQMDVKTAFLNGELDEEIYMEQPEGFI 168

Query: 261 ------------------------------------------------------------ 320
                                                                       
Sbjct: 169 VPGKEKKVCRLVKSLYGLKQAPKQWHEKFDNAMMSNGFRINECDNNNDIIKATKRMLNSK 228

Query: 321 -------------------TPQGLVLSQSHYVDKILKKYTKHGNVIAKTPIDGSLHLSKN 380
                              T  GLVLSQ+HY+ K+L+K+ ++ +   KTP+D +LHL+KN
Sbjct: 229 FDMKDLGVADVILGIKITRTSDGLVLSQTHYIKKVLEKFGRYDDSPVKTPVDVNLHLTKN 288

Query: 381 NGSSIAQLEYSRIIGSLMYIMSCTRPHIAYVVSKLSCYRSNPGHDHWKAILRISEYLKYT 433
            G+ I+QLEYS+IIGSLMYIM+CTRP IAY VSKLS Y SNPG DHWKAI+R+  YLKYT
Sbjct: 289 KGNGISQLEYSQIIGSLMYIMNCTRPDIAYSVSKLSRYTSNPGEDHWKAIVRVLRYLKYT 348

[Close]

BLAST of CSPI05G12430 vs. ExPASy TrEMBL
Match: A0A438KMB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3372 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 2.4e-110
Identity = 208/345 (60.29%), Postives = 246/345 (71.30%), Query Frame = 0


Query: 141 FKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ 200
           +K A+ +EI+SI+ NHTWELVDLP G KPL  KWIFKRK+K DGSIDKYKA+LV KGY+Q
Sbjct: 540 WKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQ 599

Query: 201 -QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG-- 260
            +GLDYFDT+SPVTRI SIRM++ I AL   EIHQMDVKT FLN +LDEEIYM+QPEG  
Sbjct: 600 TEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYMEQPEGFS 659

Query: 261 --------------------------------------------------TPQGLVLSQS 320
                                                             T   L+LSQS
Sbjct: 660 APGQEKKVYDMLIVGSDDKMITSTKNMLNSRFDMKDMRLADVILGIKIKRTSDELILSQS 719

Query: 321 HYVDKILKKYTKHGNVIAKTPIDGSLHLSKNNGSSIAQLEYSRIIGSLMYIMSCTRPHIA 380
           HYVDKIL K+ K  + +A+TP+D +LHLSKN G S++Q+EYSR+IGSLMY+MSCTRP IA
Sbjct: 720 HYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRVIGSLMYLMSCTRPDIA 779

Query: 381 YVVSKLSCYRSNPGHDHWKAILRISEYLKYTKNYELHYTRYPAVLEGNSDDNWISSTKDS 433
           Y VSKLS Y SNPG  HW+ I+R+ +YL++T++Y LHYTRYPAVLEG SD NWIS+ KDS
Sbjct: 780 YAVSKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWISNVKDS 839

[Close]

BLAST of CSPI05G12430 vs. ExPASy TrEMBL
Match: A0A438KMB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3372 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-09
Identity = 50/134 (37.31%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 56  KGESDKEKQLAKKHVQAHITKVDEVSDVVADIDLRAVISECNMV---------------- 115
           +G    + +L KK+       +D+++  V+DIDL AV+SE N+V                
Sbjct: 46  QGHKSVDCRLPKKNKLKEANVIDDITKNVSDIDLTAVVSEVNLVGSNLKEWWIDTGATRH 105

Query: 116 ------------------------------KGQDKVILKMTFGKELTLNNVLHVPDIRKN 144
                                         KGQ KVILKMT GKELTL NVL+V +IRKN
Sbjct: 106 VCSDKKMFSTFEPIENGEKVFMGNSATFEIKGQGKVILKMTSGKELTLTNVLYVSEIRKN 165

HSP 2 Score: 408.7 bits (1049), Expect = 3.1e-110
Identity = 222/400 (55.50%), Postives = 251/400 (62.75%), Query Frame = 0


Query: 141 FKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ 200
           +K AVN+EIESI+ NHTWELVDLP G KPLG KWIFKRK+K DGSIDKYKA+LV KGYKQ
Sbjct: 320 WKEAVNSEIESILQNHTWELVDLPPGCKPLGYKWIFKRKMKADGSIDKYKARLVVKGYKQ 379

Query: 201 -QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG-- 260
            +G+DYFDT+SPVTRITSIRMLI I AL+  EIHQMDVKT FLN ELDEEIYM+QPEG  
Sbjct: 380 KEGVDYFDTYSPVTRITSIRMLIAIAALYNLEIHQMDVKTAFLNGELDEEIYMEQPEGFI 439

Query: 261 ------------------------------------------------------------ 320
                                                                       
Sbjct: 440 VPGKEKKVCRLVKSLYGLKQAPKQWHEKFDNAMMSNGFRINECDKCVYVKNTTSGYVIVC 499

Query: 321 ---------------------------------------------TPQGLVLSQSHYVDK 380
                                                        T  GLVLSQSHY+ K
Sbjct: 500 LYVDDMLIMGSNNDIIKATKRMLNSKFDMKDLGVADVILGIKITRTSDGLVLSQSHYIKK 559

Query: 381 ILKKYTKHGNVIAKTPIDGSLHLSKNNGSSIAQLEYSRIIGSLMYIMSCTRPHIAYVVSK 433
           +L+K+ ++ +   KTPID +LHL+KN G+ I+QLEYS+IIGSLMYIM+CTRP IAY VSK
Sbjct: 560 VLEKFGRYDDSPVKTPIDVNLHLTKNKGNGISQLEYSQIIGSLMYIMNCTRPDIAYSVSK 619

[Close]

BLAST of CSPI05G12430 vs. NCBI nr
Match: RVX09747.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 429.5 bits (1103), Expect = 3.5e-116
Identity = 293/790 (37.09%), Postives = 348/790 (44.05%), Query Frame = 0


Query: 11  IGVAHGEKPEKFSGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPK-------------- 70
           I V+ GEKPEKFSG++FKRWQQKMLFYLTTLNLA+FLTEDAP L +              
Sbjct: 33  ISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 71  ------------------------------------------------------------ 130
                                                                       
Sbjct: 93  KHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGTKKFVVGRFLDYKM 152

Query: 131 ----------------------------------------------------GESDKEK- 190
                                                               G+S K K 
Sbjct: 153 VDSKTVNYLKHKRKEMSIEDLIIRLRIEEDNRRSEKKGAHTLNEAKANFVEHGQSSKAKK 212

Query: 191 ---------------------------------------QLAKKHVQAHITKVDEVSDVV 250
                                                  +L KK+       +D+++  V
Sbjct: 213 NNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEANVIDDITKNV 272

Query: 251 ADIDLRAVISECNMV--------------------------------------------- 310
            DIDL AV+S+ N+V                                             
Sbjct: 273 PDIDLTAVVSKVNLVGSNPKEWWIDTGATRHVCSDKKMFSTFEPIENGEKVFMGNSATSE 332

Query: 311 -KGQDKVILKMTFGKELTLNNVLHVPDIRKNLVSGSLLSKNGFKL--------------- 370
            KGQ KVILKMT GKELTL NVL+V +IRKNLVSGSLL+ +GF+L               
Sbjct: 333 IKGQGKVILKMTSGKELTLTNVLYVLEIRKNLVSGSLLNNHGFRLVFESNKFVLSKSGMY 392

Query: 371 ------------------------------------------------------------ 430
                                                                       
Sbjct: 393 VGKCYMSDGMWKLNVMTIIKSNMNKASTSTYMLESSNLWHGEPQTFKEAVNSTEGLMWKE 452

Query: 431 AVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ-QG 433
            + +EI+SI+ NHTWELVDLP G KPL  KWIFKRK+K DGSIDKYKA+LV KGY+Q +G
Sbjct: 453 VIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQTEG 512

[Close]

BLAST of CSPI05G12430 vs. NCBI nr
Match: RVX22336.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 409.1 bits (1050), Expect = 4.9e-110
Identity = 208/345 (60.29%), Postives = 246/345 (71.30%), Query Frame = 0


Query: 141 FKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ 200
           +K A+ +EI+SI+ NHTWELVDLP G KPL  KWIFKRK+K DGSIDKYKA+LV KGY+Q
Sbjct: 540 WKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQ 599

Query: 201 -QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG-- 260
            +GLDYFDT+SPVTRI SIRM++ I AL   EIHQMDVKT FLN +LDEEIYM+QPEG  
Sbjct: 600 TEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYMEQPEGFS 659

Query: 261 --------------------------------------------------TPQGLVLSQS 320
                                                             T   L+LSQS
Sbjct: 660 APGQEKKVYDMLIVGSDDKMITSTKNMLNSRFDMKDMRLADVILGIKIKRTSDELILSQS 719

Query: 321 HYVDKILKKYTKHGNVIAKTPIDGSLHLSKNNGSSIAQLEYSRIIGSLMYIMSCTRPHIA 380
           HYVDKIL K+ K  + +A+TP+D +LHLSKN G S++Q+EYSR+IGSLMY+MSCTRP IA
Sbjct: 720 HYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRVIGSLMYLMSCTRPDIA 779

Query: 381 YVVSKLSCYRSNPGHDHWKAILRISEYLKYTKNYELHYTRYPAVLEGNSDDNWISSTKDS 433
           Y VSKLS Y SNPG  HW+ I+R+ +YL++T++Y LHYTRYPAVLEG SD NWIS+ KDS
Sbjct: 780 YAVSKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWISNVKDS 839

[Close]

BLAST of CSPI05G12430 vs. NCBI nr
Match: RVX22336.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 73.6 bits (179), Expect = 4.8e-09
Identity = 50/134 (37.31%), Postives = 66/134 (49.25%), Query Frame = 0


Query: 56  KGESDKEKQLAKKHVQAHITKVDEVSDVVADIDLRAVISECNMV---------------- 115
           +G    + +L KK+       +D+++  V+DIDL AV+SE N+V                
Sbjct: 46  QGHKSVDCRLPKKNKLKEANVIDDITKNVSDIDLTAVVSEVNLVGSNLKEWWIDTGATRH 105

Query: 116 ------------------------------KGQDKVILKMTFGKELTLNNVLHVPDIRKN 144
                                         KGQ KVILKMT GKELTL NVL+V +IRKN
Sbjct: 106 VCSDKKMFSTFEPIENGEKVFMGNSATFEIKGQGKVILKMTSGKELTLTNVLYVSEIRKN 165

HSP 2 Score: 408.3 bits (1048), Expect = 8.3e-110
Identity = 206/334 (61.68%), Postives = 244/334 (73.05%), Query Frame = 0


Query: 141 FKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ 200
           +K A+ +EI+SI+ NHTWELVDLP G KPL  KWIFKRK+K DGSIDKYKA+LV KGY+Q
Sbjct: 628 WKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQ 687

Query: 201 -QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG-- 260
            +GLDYFDT+SPVTRI SIRM++ I AL   EIHQMDVKT FLN +LDEEIYM+QPE   
Sbjct: 688 IEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYMEQPEDDM 747

Query: 261 ---------------------------------------TPQGLVLSQSHYVDKILKKYT 320
                                                  T   L+LSQSHYVDKIL K+ 
Sbjct: 748 IIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSDELILSQSHYVDKILGKFD 807

Query: 321 KHGNVIAKTPIDGSLHLSKNNGSSIAQLEYSRIIGSLMYIMSCTRPHIAYVVSKLSCYRS 380
           K  + +A+TP+D +LHLSKN G S++Q+EYSR+IGSLMY+MSCTRP IAY VSKLS Y S
Sbjct: 808 KDNSGVARTPVDVTLHLSKNKGESVSQVEYSRVIGSLMYLMSCTRPDIAYAVSKLSRYMS 867

Query: 381 NPGHDHWKAILRISEYLKYTKNYELHYTRYPAVLEGNSDDNWISSTKDSKSTNGYIFTLG 433
           NPG  HW+ I+R+ +YL++T++Y LHYTRYPAVLEG SD NWIS+ KDSKS +GY+FTLG
Sbjct: 868 NPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLG 927

[Close]

BLAST of CSPI05G12430 vs. NCBI nr
Match: RVW65227.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 106.7 bits (265), Expect = 5.2e-19
Identity = 92/294 (31.29%), Postives = 112/294 (38.10%), Query Frame = 0


Query: 11  IGVAHGEKPEKFSGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPKGESD---------- 70
           I V+ GEKPEKFSG++FKRWQQKMLFYLTTLNLA+FLTEDAP L + E D          
Sbjct: 33  ISVSPGEKPEKFSGLNFKRWQQKMLFYLTTLNLARFLTEDAPKLKEDEHDIQVISAIDAW 92

Query: 71  -----------------------KEKQLAK------------------------------ 130
                                   +K+ AK                              
Sbjct: 93  KHSDFLCRNYVMNGLADSLYNVYSDKKTAKELWESLDRKYKTEDAGAKKFVVGRFLDYKM 152

Query: 131 -------------------------------------------KHVQAHITK-------- 144
                                                      K V   + K        
Sbjct: 153 VDSKTVAKTNNNKGKGSKLGPKGGISKKPKFQGKCFNCGKQGHKSVDCRLPKKNKPKEAN 212

HSP 2 Score: 407.5 bits (1046), Expect = 1.4e-109
Identity = 206/334 (61.68%), Postives = 243/334 (72.75%), Query Frame = 0


Query: 141 FKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ 200
           +K A+ +EI+SI+ NHTWELVDLP G KPL  KWIFKRK+K DGSIDKYKA+LV KGY+Q
Sbjct: 55  WKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQ 114

Query: 201 -QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG-- 260
            + LDYFDT+SPVTRI SIRM++ I AL   EIHQMDVKT FLN +LDEEIYM+QPE   
Sbjct: 115 TESLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYMEQPEDDM 174

Query: 261 ---------------------------------------TPQGLVLSQSHYVDKILKKYT 320
                                                  T   L+LSQSHYVDKIL K+ 
Sbjct: 175 LIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSDELILSQSHYVDKILGKFD 234

Query: 321 KHGNVIAKTPIDGSLHLSKNNGSSIAQLEYSRIIGSLMYIMSCTRPHIAYVVSKLSCYRS 380
           K  + +A+TP+D +LHLSKN G S++Q+EYSR+IGSLMY+MSCTRP IAY VSKLS Y S
Sbjct: 235 KDNSGVARTPVDVTLHLSKNKGESVSQVEYSRVIGSLMYLMSCTRPDIAYAVSKLSRYTS 294

Query: 381 NPGHDHWKAILRISEYLKYTKNYELHYTRYPAVLEGNSDDNWISSTKDSKSTNGYIFTLG 433
           NPG  HW+ I+R+ +YL++T++Y LHYTRYPAVLEG SD NWIS+ KDSKS +GY+FTLG
Sbjct: 295 NPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWISNVKDSKSHSGYVFTLG 354

[Close]

BLAST of CSPI05G12430 vs. NCBI nr
Match: RVX00298.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 407.1 bits (1045), Expect = 1.8e-109
Identity = 208/345 (60.29%), Postives = 244/345 (70.72%), Query Frame = 0


Query: 141  FKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQ 200
            +K A+ +EI+SI+ NHTWELVDLP G KPL  KWIFKRK+K DGSIDKYKA+LV KGY+Q
Sbjct: 829  WKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWIFKRKMKVDGSIDKYKARLVIKGYRQ 888

Query: 201  -QGLDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG-- 260
             +GLDYFDT+SPVTRI SIRM++ I AL   EIHQMDVKT FLN +LDEEIYM+QPEG  
Sbjct: 889  TEGLDYFDTYSPVTRINSIRMVLAIAALRNLEIHQMDVKTAFLNGDLDEEIYMEQPEGFS 948

Query: 261  --------------------------------------------------TPQGLVLSQS 320
                                                              T   L+LSQS
Sbjct: 949  APGQEKKVYDMLIVGSDDKMITSTKNMLNSRFDMKDMGLADVILGIKIKRTSNELILSQS 1008

Query: 321  HYVDKILKKYTKHGNVIAKTPIDGSLHLSKNNGSSIAQLEYSRIIGSLMYIMSCTRPHIA 380
            HYVDKIL K+ K  + +A+TP+D +LHLSKN G S++Q+EYSRIIGSLMY+MSCTRP IA
Sbjct: 1009 HYVDKILGKFDKDNSGVARTPVDVTLHLSKNKGESVSQVEYSRIIGSLMYLMSCTRPDIA 1068

Query: 381  YVVSKLSCYRSNPGHDHWKAILRISEYLKYTKNYELHYTRYPAVLEGNSDDNWISSTKDS 433
            Y V KLS Y SNPG  HW+ I+R+ +YL++T++Y LHYTRYPAVLEG SD NWIS+ KDS
Sbjct: 1069 YAVGKLSRYTSNPGAKHWQGIIRVLKYLRFTRDYGLHYTRYPAVLEGYSDANWISNVKDS 1128

[Close]

BLAST of CSPI05G12430 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-42
Identity = 121/401 (30.17%), Postives = 184/401 (45.89%), Query Frame = 0


Query: 144 AVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVAKGYKQQ-G 203
           A+++EI ++   HTWE+  LP   KP+GCKW++K K  +DG+I++YKA+LVAKGY QQ G
Sbjct: 101 AMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEG 160

Query: 204 LDYFDTHSPVTRITSIRMLITILALHGFEIHQMDVKTTFLNDELDEEIYMQQPEG----- 263
           +D+ +T SPV ++TS+++++ I A++ F +HQ+D+   FLN +LDEEIYM+ P G     
Sbjct: 161 IDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQ 220

Query: 264 --------------------------------TPQGLVLSQSH----------------- 323
                                           T  G    QSH                 
Sbjct: 221 GDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCV 280

Query: 324 --YVDKIL-----------------------------------------------KKYTK 383
             YVD I+                                               +KY  
Sbjct: 281 LVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYAL 340

Query: 384 H--------GNVIAKTPIDGSLHLSKNNGSSIAQLE-YSRIIGSLMYIMSCTRPHIAYVV 431
                    G   +  P+D S+  S ++G      + Y R+IG LMY +  TR  I++ V
Sbjct: 341 DLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMY-LQITRLDISFAV 400

[Close]

BLAST of CSPI05G12430 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-16
Identity = 38/90 (42.22%), Postives = 61/90 (67.78%), Query Frame = 0


Query: 136 LSKNGFKLAVNNEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKLKTDGSIDKYKAKLVA 195
           L   G+  A+  E++++  N TW LV  P+    LGCKW+FK KL +DG++D+ KA+LVA
Sbjct: 35  LKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVA 94

Query: 196 KGYKQ-QGLDYFDTHSPVTRITSIRMLITI 225
           KG+ Q +G+ + +T+SPV R  +IR ++ +
Sbjct: 95  KGFHQEEGIYFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:

BLAST of CSPI05G12430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.7e-50	30.41	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	2.1e-39	29.28	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.2e-36	28.43	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	8.5e-33	25.62	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	1.5e-21	42.40	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of CSPI05G12430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438JLD2	1.7e-116	37.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A2N9GPK3	8.6e-113	59.09	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9GPK3	7.3e-11	69.09	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A438KMB2	2.4e-110	60.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A0A438KMB2	2.3e-09	37.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

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BLAST of CSPI05G12430 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX09747.1	3.5e-116	37.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX22336.1	4.9e-110	60.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX22336.1	4.8e-09	37.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW65227.1	5.2e-19	31.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX00298.1	1.8e-109	60.29	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

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BLAST of CSPI05G12430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-42	30.17	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	1.1e-16	42.22	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 155..258 e-value: 1.5E-30 score: 106.6
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 72..150
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 5..64
None	No IPR available	PANTHER	PTHR47592:SF11	SUBFAMILY NOT NAMED	coord: 72..150 coord: 5..64
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 373..431 e-value: 1.75332E-19 score: 82.5161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G12430.1	CSPI05G12430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity