CSPI05G11940 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G11940
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr5: 10612081 .. 10615418 (-)
RNA-Seq Expression	CSPI05G11940
Synteny	CSPI05G11940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTATGGGAGGTTTGAGATACTTCTTGTCTATCATTGACGCCTTTTCAAGGAAGGTATGGATGTATCCATTGAAACAAAAGGATGAAACTTTTGAGAAATTCCTTGAATGGAAGAAGCAAGTTGAAAATCAAACAGGTAGGGAGGTCAAGTATTTGAGGACAAATAATGGTTTAGAATTTGTGAATCAAATTCAACAGCTTTTGCAAATTTGAGGGAACGAGACATTTCATTGTTACGTACACTCCACAACAAAATGGTTTAGCTGAGAGGTTTAACGGAACTATATGGAACGTATTAGGTGTCTCTTGACTAATGCTTCATTACCCTTGAAATTTTGGGAGGAAGTTGCTCAAACAGTATGTTATCTCATTAATAGGAGTCCTTCTACAACTTTAGACTTAAAGACTCCTCAAGAGGTATAGACAGGTAAAGCTCCAAGTTTAGATCATCTCAGAGTGTTTGGATGCTCAACATATGCTCATGTTAAAGATGGAAAGTTGAACAAAAGGGCACTGAAATGCATGTTTATTGGTTATCCTCAGGGTGTCAAAGGTTATAAAATTTGGTGCTTGGAGAAGGGGATAAATAAATGCATTATCAGTAGAGATGTAACTTTTAATGAGATAGAAATGTCGTATTGTGTCAAAGAGCAACAAAAATAGAAGACTATTGATCAGGTTGAGACAGAGGTCAGAGTTGATTTAGAAGTACGACCATCAATTGGCTTAGATGTATCTAGTGATCAGTTACCACTAGTTTCACAGACAGAGGCTACACACCAGTCTGAATTTGATGGTATACAGTCTCAACAGGAGAGGATTTTGATTGATGAGGGACTTCACAGTGAAGAAAGCTCAAGTAATAATGACCTACAAAACTATCAGCTTACTCGGGACAGGGTTCAGAGAGAAAGACAGGCTCCTATAAGGTATGGTTACGCTGACTTAGTTGCTTATGCTCTTACTTGCGCAGCTGATAGTATTGAAGCACAGCCTCTTACTTTTGAAGAGACAATCGTATATGATTCTAAGAAACAATGGAAGGATGCTATGGAGGCAGAGTTGTTCTCTTTACAAAAGAATCAGACATGGTCATTGGTTCCAAAGCCTCATAACCAGAAGCTCATTCAATCAAAGTGGATTTACAAAATCAAGTCAGGTACATGAGGTGATAGTAAGCCTAGATATAAGGCTAGGTTGGTAGCAAAGGGCTACACTCAGAAGGAGGGAGTTGATTTTAATGAGATTTTTTCTCCGGTGGTGAGGCATTCGTCCATTAGATTAATTTTATTTATTGTTGTTCACTTTGATATGTTCATTGAACAAATGGACGTCACCACAACATTTCTTCATGGAGAATTGGAGGAGGTGATTTACATGGCTCAACCTAAGGGCTATGAGGTGAAGGGTAAGGAAGACATGGTTTGTCGTCTTCATAAGTCCATTTATGGACTTAAACAATCTCCAAGACAGTGGTATATCAGGTTTGATACTTTCATTCTAAAGCAGGGATTTTACAGGAACTCATATGATGCTTGTGTTTACTGGAAACTATCTCAGAGAGGTACATTTATCTATCTACTGTTGTATGTAGATGATATGATACTAGTGTCTAAGGATTATGCTGAAATCTGTCAACTCAAGAAACAGTTAAGTAGTGAGTATGAAATGAAAGATTTAGGTAAGCTAAAAAGGATCCTAGGGATGGATGTGAAAAGAGATAGGGAAAAAGGTTTCTTAGCCGTTTCGTAAGAAAGTTATGTGATTAAACGCTTGAAAAGTACAATATGTCTAGTTGCAAGGCCATTTCTACACCCTTAGCATCTCATTTAAAACTTTCTTCGTCTCAATGTCCTGTTACTGAACAAGAAAGGTTAGAGATGTCTAATATTCCATATTGTAATGCTGTTGGAAGTACTATGTACCTGATGATTTGTACTAGGCCTGACTTGGGTTATGCTATGAGTATGATAAGTAGATTTATGTTAAATCCTAGGGGGGGAACATTGGAATGTTGTTAAATGGGTATTTCGATATCTGAAAGGTAGTGCCAGTGTATCATTGTGTTTTATTAAGGATTGTGATAAGTCAACATTGTTGGAAGGCTTCACAAATGCAGACAACAATGTTGCAGATCTTGCTAAAAGAAGGTCACTATCAGGTCACGCTTTTCGCTTGTATGGTAATATTGTCAGTTGGAAAGTTACCCTACAACCAGTTGTTGCTTTGTCGACTACTGAGTCAGAATATATTTCTCTTGGTGAAGCAGCGAAGGAAGCAGTGTGGTTGAAAAGAATTGTTGGTGAGTTGTTATCGCAGGAGTTTATTCCTATCATCCATTGTGATAGCCAGAGTGCTATTCATCTTGCGAAAAATCTATCTCATCATGAACGGTCTAAGCATATCAATGTCAAATTTCATTATATTAGAAATGTTATTGCTTAAAAAGATGTTGAACTGGTAAAAGTTCATACCGTTGAGAATTTGTCAGATATGTTAACCAAAATTCTTCCAGCTCATAGGTTTAAATACCTATTAGATGAGCTGAAGGTTAAATCTGGATGATAGGGTATTGAGAGAATCAATTTGGTGTCTTAAATAGCTTGTCATGAGGGAGATTTGTAGAAAAATGACAAGTATTTAACAGTTAGTAAAATGGGATTTAAGTTAAGGGTAGAGTGGTAATTGCCTTTGTGGCAAATTTGTAATTGTTTACATCTTCTACGGTGTTCGAAGAAGGAAATGTTGGAAATTTTTTGTCCTAAAACTCGTAGTTTGTAATCATATTCTGTTTCAATAAAGTTGTTATTGAGAAATTAAATAATCCTAAATCCAATAAATCAAGTTCCAAGGCTATTTTTGAATAAACTTGAACTTTATGTGTAAACATAAACGTGGATCAAGTTCGAGTATATATAGCCTAAATAGTCTATAGTATATGAATAAAGGTTGGGCGCCTTATTTAGAGAAACTATGGATGCGGCCCACTTTGTAGTACAAACGAGGTGATCCTAATCGTTCATGTAGAGACATCCTATGTAAAATGTTTACATAAGACTGAACCATGAATTAGTCATTTTTACGTTATAACACCGTTTACTGTTTAAAACTGACTATCTCAATTATTGATGACCTAGGTAACTTAGTCTTAATCCTGAGTTAACTATGAACTCCAGTTCACACGAGATTATCCTTAGATCTGCATAGGTGAGGGCAGCTCATCAGCGTTGGCCCAATAAGCCTCCCATTTCAGGGGTAAGATCGGGTGGATAGCTGGGAACATAGGGTACAAGATGGAATTCACTCCTACCCGCTTTAGGGTTAGTAGATAG

mRNA sequence

ATGTCTTCTATGGGAGGTTTGAGATACTTCTTGTCTATCATTGACGCCTTTTCAAGGAAGGTATGGATGTATCCATTGAAACAAAAGGATGAAACTTTTGAGAAATTCCTTGAATGGAAGAAGCAAGTTGAAAATCAAACAGGTAGGGAGGTCAAGAGTCCTTCTACAACTTTAGACTTAAAGACTCCTCAAGAGGGTGTCAAAGGTTATAAAATTTGGTGCTTGGAGAAGGGGATAAATAAATGCATTATCAGTAGAGATGTTGAGACAGAGGTCAGAGTTGATTTAGAAGTACGACCATCAATTGGCTTAGATGTATCTAGTGATCAGTTACCACTAGTTTCACAGACAGAGGCTACACACCAGTCTGAATTTGATGGTATACAGTCTCAACAGGAGAGGATTTTGATTGATGAGGGACTTCACAGTGAAGAAAGCTCAAGTAATAATGACCTACAAAACTATCAGCTTACTCGGGACAGGGTTCAGAGAGAAAGACAGGCTCCTATAAGGTATGGTTACGCTGACTTAGTTGCTTATGCTCTTACTTGCGCAGCTGATAGTATTGAAGCACAGCCTCTTACTTTTGAAGAGACAATCGTATATGATTCTAAGAAACAATGGAAGGATGCTATGGAGGCAGAGTTGTTCTCTTTACAAAAGAATCAGACATGGTCATTGGTTCCAAAGCCTCATAACCAGAAGCTCATTCAATCAAAGTGGATTTACAAAATCAAGTCAGCAAAGGGCTACACTCAGAAGGAGGGAGTTGATTTTAATGAGATTTTTTCTCCGGTGGTGAGGCATTCGTCCATTAGATTAATTTTATTTATTGTTGTTCACTTTGATATGTTCATTGAACAAATGGACGTCACCACAACATTTCTTCATGGAGAATTGGAGGAGGTGATTTACATGGCTCAACCTAAGGGCTATGAGGTGAAGGGTAAGGAAGACATGGTTTGTCGTCTTCATAAGTCCATTTATGGACTTAAACAATCTCCAAGACAGTGGTATATCAGGTTTGATACTTTCATTCTAAAGCAGGGATTTTACAGGAACTCATATGATGCTTGTGTTTACTGGAAACTATCTCAGAGAGGTACATTTATCTATCTACTGTTGTATGTAGATGATATGATACTAGTGTCTAAGGATTATGCTGAAATCTGTCAACTCAAGAAACAGTTAAGTAGTGAGTATGAAATGAAAGATTTAGCATCTCATTTAAAACTTTCTTCGTCTCAATGTCCTGTTACTGAACAAGAAAGGTTAGAGATGTCTAATATTCCATATTGTAATGCTGTTGGAAGTACTATGTACCTGATGATTTGTACTAGGCCTGACTTGGGTTATGCTATGAGTAGTGCCAGTGTATCATTGTGTTTTATTAAGGATTGTGATAAGTCAACATTGTTGGAAGGCTTCACAAATGCAGACAACAATGTTGCAGATCTTGCTAAAAGAAGGTCACTATCAGGTCACGCTTTTCGCTTGTATGGTAATATTGTCAGTTGGAAAGTTACCCTACAACCAGTTGTTGCTTTGTCGACTACTGAGTCAGAATATATTTCTCTTGGTGAAGCAGCGAAGGAAGCAGTGTGGTTGAAAAGAATTGTTGGTGAGTTGTTATCGCAGGAGTTTATTCCTATCATCCATTGTGATAGCCAGAGTGCTATTCATCTTGCGAAAAATCTATCTCATCATGAACGGGGTAAGATCGGGTGGATAGCTGGGAACATAGGGTACAAGATGGAATTCACTCCTACCCGCTTTAGGGTTAGTAGATAG

Coding sequence (CDS)

ATGTCTTCTATGGGAGGTTTGAGATACTTCTTGTCTATCATTGACGCCTTTTCAAGGAAGGTATGGATGTATCCATTGAAACAAAAGGATGAAACTTTTGAGAAATTCCTTGAATGGAAGAAGCAAGTTGAAAATCAAACAGGTAGGGAGGTCAAGAGTCCTTCTACAACTTTAGACTTAAAGACTCCTCAAGAGGGTGTCAAAGGTTATAAAATTTGGTGCTTGGAGAAGGGGATAAATAAATGCATTATCAGTAGAGATGTTGAGACAGAGGTCAGAGTTGATTTAGAAGTACGACCATCAATTGGCTTAGATGTATCTAGTGATCAGTTACCACTAGTTTCACAGACAGAGGCTACACACCAGTCTGAATTTGATGGTATACAGTCTCAACAGGAGAGGATTTTGATTGATGAGGGACTTCACAGTGAAGAAAGCTCAAGTAATAATGACCTACAAAACTATCAGCTTACTCGGGACAGGGTTCAGAGAGAAAGACAGGCTCCTATAAGGTATGGTTACGCTGACTTAGTTGCTTATGCTCTTACTTGCGCAGCTGATAGTATTGAAGCACAGCCTCTTACTTTTGAAGAGACAATCGTATATGATTCTAAGAAACAATGGAAGGATGCTATGGAGGCAGAGTTGTTCTCTTTACAAAAGAATCAGACATGGTCATTGGTTCCAAAGCCTCATAACCAGAAGCTCATTCAATCAAAGTGGATTTACAAAATCAAGTCAGCAAAGGGCTACACTCAGAAGGAGGGAGTTGATTTTAATGAGATTTTTTCTCCGGTGGTGAGGCATTCGTCCATTAGATTAATTTTATTTATTGTTGTTCACTTTGATATGTTCATTGAACAAATGGACGTCACCACAACATTTCTTCATGGAGAATTGGAGGAGGTGATTTACATGGCTCAACCTAAGGGCTATGAGGTGAAGGGTAAGGAAGACATGGTTTGTCGTCTTCATAAGTCCATTTATGGACTTAAACAATCTCCAAGACAGTGGTATATCAGGTTTGATACTTTCATTCTAAAGCAGGGATTTTACAGGAACTCATATGATGCTTGTGTTTACTGGAAACTATCTCAGAGAGGTACATTTATCTATCTACTGTTGTATGTAGATGATATGATACTAGTGTCTAAGGATTATGCTGAAATCTGTCAACTCAAGAAACAGTTAAGTAGTGAGTATGAAATGAAAGATTTAGCATCTCATTTAAAACTTTCTTCGTCTCAATGTCCTGTTACTGAACAAGAAAGGTTAGAGATGTCTAATATTCCATATTGTAATGCTGTTGGAAGTACTATGTACCTGATGATTTGTACTAGGCCTGACTTGGGTTATGCTATGAGTAGTGCCAGTGTATCATTGTGTTTTATTAAGGATTGTGATAAGTCAACATTGTTGGAAGGCTTCACAAATGCAGACAACAATGTTGCAGATCTTGCTAAAAGAAGGTCACTATCAGGTCACGCTTTTCGCTTGTATGGTAATATTGTCAGTTGGAAAGTTACCCTACAACCAGTTGTTGCTTTGTCGACTACTGAGTCAGAATATATTTCTCTTGGTGAAGCAGCGAAGGAAGCAGTGTGGTTGAAAAGAATTGTTGGTGAGTTGTTATCGCAGGAGTTTATTCCTATCATCCATTGTGATAGCCAGAGTGCTATTCATCTTGCGAAAAATCTATCTCATCATGAACGGGGTAAGATCGGGTGGATAGCTGGGAACATAGGGTACAAGATGGAATTCACTCCTACCCGCTTTAGGGTTAGTAGATAG

Protein sequence

MSSMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVKSPSTTLDLKTPQEGVKGYKIWCLEKGINKCIISRDVETEVRVDLEVRPSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTRDRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSLQKNQTWSLVPKPHNQKLIQSKWIYKIKSAKGYTQKEGVDFNEIFSPVVRHSSIRLILFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYGLKQSPRQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEYEMKDLASHLKLSSSQCPVTEQERLEMSNIPYCNAVGSTMYLMICTRPDLGYAMSSASVSLCFIKDCDKSTLLEGFTNADNNVADLAKRRSLSGHAFRLYGNIVSWKVTLQPVVALSTTESEYISLGEAAKEAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNLSHHERGKIGWIAGNIGYKMEFTPTRFRVSR*

Homology

[Close]

BLAST of CSPI05G11940 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.4e-94
Identity = 252/793 (31.78%), Postives = 365/793 (46.03%), Query Frame = 0


Query: 1    MSSMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK-------- 60
            + SMGG +YF++ ID  SRK+W+Y LK KD+ F+ F ++   VE +TGR++K        
Sbjct: 494  IESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGG 553

Query: 61   ------------------------------------------------------------ 120
                                                                        
Sbjct: 554  EYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEA 613

Query: 121  ----------SPSTTLDLKTPQE---------------GVK------------------- 180
                      SPS  L  + P+                G +                   
Sbjct: 614  VQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIP 673

Query: 181  -----------GYKIWCLEKGINKCIISRDV---ETEVR--VDLEVRPSIGLDVSSDQLP 240
                       GY++W   K   K I SRDV   E+EVR   D+  +   G+  +   +P
Sbjct: 674  CIFIGYGDEEFGYRLWDPVK--KKVIRSRDVVFRESEVRTAADMSEKVKNGIIPNFVTIP 733

Query: 241  LVSQTEATHQSEFDGIQSQQER--------ILIDEGLHSEESSSNNDLQNYQLTRDRVQR 300
              S    + +S  D +  Q E+          +DEG+   E  +  + Q+  L R   +R
Sbjct: 734  STSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQPLRRS--ER 793

Query: 301  ERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSLQKNQT 360
             R    RY   + V         S + +P + +E + +  K Q   AM+ E+ SLQKN T
Sbjct: 794  PRVESRRYPSTEYVLI-------SDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGT 853

Query: 361  WSLVPKPHNQKLIQSKWIYKIKS--------------AKGYTQKEGVDFNEIFSPVVRHS 420
            + LV  P  ++ ++ KW++K+K                KG+ QK+G+DF+EIFSPVV+ +
Sbjct: 854  YKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMT 913

Query: 421  SIRLILFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYG 480
            SIR IL +    D+ +EQ+DV T FLHG+LEE IYM QP+G+EV GK+ MVC+L+KS+YG
Sbjct: 914  SIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYG 973

Query: 481  LKQSPRQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEI 540
            LKQ+PRQWY++FD+F+  Q + +   D CVY+K      FI LLLYVDDM++V KD   I
Sbjct: 974  LKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLI 1033

Query: 541  CQLKKQLSSEYEMKD--------------------------------------------- 574
             +LK  LS  ++MKD                                             
Sbjct: 1034 AKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVS 1093

[Close]

BLAST of CSPI05G11940 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-53
Identity = 155/540 (28.70%), Postives = 264/540 (48.89%), Query Frame = 0


Query: 121  HQSEFDGIQSQQERILIDEGLHSEESSSNNDLQN--YQLTRDRVQRERQAP-IRYGYADL 180
            H +E  G  +  E    +   H +E   +N  +N   ++   R +R +  P I Y   D 
Sbjct: 815  HLNESKGSGNPNESRESETAEHLKEIGIDNPTKNDGIEIINRRSERLKTKPQISYNEEDN 874

Query: 181  VAYALTCAADSI-EAQPLTFEETIVYDSKKQWKDAMEAELFSLQKNQTWSLVPKPHNQKL 240
                +   A +I    P +F+E    D K  W++A+  EL + + N TW++  +P N+ +
Sbjct: 875  SLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAHKINNTWTITKRPENKNI 934

Query: 241  IQSKWIYKIK--------------SAKGYTQKEGVDFNEIFSPVVRHSSIRLILFIVVHF 300
            + S+W++ +K               A+G+TQK  +D+ E F+PV R SS R IL +V+ +
Sbjct: 935  VDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQY 994

Query: 301  DMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYGLKQSPRQWYIRF 360
            ++ + QMDV T FL+G L+E IYM  P+G  +    D VC+L+K+IYGLKQ+ R W+  F
Sbjct: 995  NLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAARCWFEVF 1054

Query: 361  DTFILKQGFYRNSYDACVYWKLSQRGTF---IYLLLYVDDMILVSKDYAEICQLKKQLSS 420
            +  + +  F  +S D C+Y  +  +G     IY+LLYVDD+++ + D   +   K+ L  
Sbjct: 1055 EQALKECEFVNSSVDRCIY--ILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLME 1114

Query: 421  EYEMKDL-------ASHLKLSSSQCPVTE----QERLEMSNIPYCNAV------------ 480
            ++ M DL          +++   +  +++    ++ L   N+  CNAV            
Sbjct: 1115 KFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYEL 1174

Query: 481  ---------------GSTMYLMICTRPD--------------------------LGYAMS 540
                           G  MY+M+CTRPD                          L Y   
Sbjct: 1175 LNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKG 1234

Query: 541  SASVSLCFIKDCDKSTLLEGFTNADNNVADLAKRRSLSGHAFRLYG-NIVSWKVTLQPVV 574
            +  + L F K+      + G+ ++D   +++  R+S +G+ F+++  N++ W    Q  V
Sbjct: 1235 TIDMKLIFKKNLAFENKIIGYVDSDWAGSEI-DRKSTTGYLFKMFDFNLICWNTKRQNSV 1294

[Close]

BLAST of CSPI05G11940 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.9e-43
Identity = 141/474 (29.75%), Postives = 222/474 (46.84%), Query Frame = 0


Query: 179  AYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSLQKNQTWSLV-PKPHNQKLI 238
            +YA + AA+S   +P T  + +  D   +W+ AM +E+ +   N TW LV P P +  ++
Sbjct: 928  SYATSLAANS---EPRTAIQAMKDD---RWRQAMGSEINAQIGNHTWDLVPPPPPSVTIV 987

Query: 239  QSKWIYKIK--------------SAKGYTQKEGVDFNEIFSPVVRHSSIRLILFIVVHFD 298
              +WI+  K               AKGY Q+ G+D+ E FSPV++ +SIR++L + V   
Sbjct: 988  GCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRS 1047

Query: 299  MFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYGLKQSPRQWYIRFD 358
              I Q+DV   FL G L + +YM+QP G+  K + D VCRL K+IYGLKQ+PR WY+   
Sbjct: 1048 WPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELR 1107

Query: 359  TFILKQGFYRNSYDACVYWKLSQRG-TFIYLLLYVDDMILVSKDYAEICQLKKQLSSEYE 418
            T++L  GF  +  D  ++  + QRG + IY+L+YVDD+++   D   +      LS  + 
Sbjct: 1108 TYLLTVGFVNSISDTSLF--VLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFS 1167

Query: 419  MK-----------------------------DLASHLKLSSSQ---CPVTEQERLEM--- 478
            +K                             DL +   + +++    P+    +L +   
Sbjct: 1168 VKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSG 1227

Query: 479  SNIP----YCNAVGSTMYLMICTRPDLGYAMSSASVSLCFIKDCDKSTL---LEGFTNAD 538
            + +P    Y   VGS  YL   TRPDL YA++  S  +    D   + L   L       
Sbjct: 1228 TKLPDPTEYRGIVGSLQYLAF-TRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTP 1287

Query: 539  NNVADLAKRRSLSGHAFR--------------------LYGNIVSWKVTLQPVVALSTTE 574
            ++   L K  +LS HA+                     L  + +SW    Q  V  S+TE
Sbjct: 1288 DHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTE 1347

HSP 2 Score: 43.1 bits (100), Expect = 1.3e-02
Identity = 18/44 (40.91%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 3   SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQ 47
           S+   RY++  +D F+R  W+YPLKQK +  + F+ +K  VEN+
Sbjct: 517 SIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENR 560

[Close]

BLAST of CSPI05G11940 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.2e-40
Identity = 131/463 (28.29%), Postives = 213/463 (46.00%), Query Frame = 0


Query: 190  EAQPLTFEETIVYDSKKQWKDAMEAELFSLQKNQTWSLVPKPHNQ-KLIQSKWIYKIK-- 249
            E++P T  + +     ++W++AM +E+ +   N TW LVP P +   ++  +WI+  K  
Sbjct: 953  ESEPRTAIQAL---KDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 250  ------------SAKGYTQKEGVDFNEIFSPVVRHSSIRLILFIVVHFDMFIEQMDVTTT 309
                         AKGY Q+ G+D+ E FSPV++ +SIR++L + V     I Q+DV   
Sbjct: 1013 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1072

Query: 310  FLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYGLKQSPRQWYIRFDTFILKQGFYRN 369
            FL G L + +YM+QP G+  K + + VC+L K++YGLKQ+PR WY+    ++L  GF  +
Sbjct: 1073 FLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNS 1132

Query: 370  SYDACVYWKLSQRG-TFIYLLLYVDDMILVSKDYAEICQLKKQLSSEYEMKD-------- 429
              D  ++  + QRG + +Y+L+YVDD+++   D   +      LS  + +KD        
Sbjct: 1133 VSDTSLF--VLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFL 1192

Query: 430  ------LASHLKLSSSQ------------------CPVTEQERLEMSN-------IPYCN 489
                  + + L LS  +                   P+    +L + +         Y  
Sbjct: 1193 GIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRG 1252

Query: 490  AVGSTMYLMICTRPDLGYAMSSASVSLCFIKDCDKSTL---LEGFTNADNNVADLAKRRS 549
             VGS  YL   TRPD+ YA++  S  +    +     L   L       N+   L K  +
Sbjct: 1253 IVGSLQYLAF-TRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNT 1312

Query: 550  LSGHAFR--------------------LYGNIVSWKVTLQPVVALSTTESEYISLGEAAK 574
            LS HA+                     L  + +SW    Q  V  S+TE+EY S+   + 
Sbjct: 1313 LSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSS 1372

HSP 2 Score: 42.7 bits (99), Expect = 1.7e-02
Identity = 17/39 (43.59%), Postives = 27/39 (69.23%), Query Frame = 0


Query: 8   RYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQ 47
           RY++  +D F+R  W+YPLKQK +  E F+ +K  +EN+
Sbjct: 543 RYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENR 581

[Close]

BLAST of CSPI05G11940 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.0e-15
Identity = 53/136 (38.97%), Postives = 72/136 (52.94%), Query Frame = 0


Query: 427 MSNIPYCNAVGSTMYLMICTRPDLG--------------------------YAMSSASVS 486
           M N+PY +AVG+ MYLM+ TRPDL                           Y  S+ +  
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 487 LCFIKDCDKSTLLEGFTNADNNVADLAKRRSLSGHAFRLYGNIVSWKVTLQPVVALSTTE 537
           L F +    +  L G+++AD    D+  RRS SG+ F+L G  VSW+   Q  VALS+TE
Sbjct: 61  LEFTR--AGTAKLVGYSDAD-WAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTE 120

[Close]

BLAST of CSPI05G11940 vs. ExPASy TrEMBL
Match: A0A5D3CTV2 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00910 PE=4 SV=1)

HSP 1 Score: 885.9 bits (2288), Expect = 9.0e-254
Identity = 503/802 (62.72%), Postives = 529/802 (65.96%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMGG RYF+SIID FSRKVW+YPLKQKDE F KFLEWKKQVENQTGR+VK          
Sbjct: 323  SMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEF 382

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 383  VNNKFNQFCKSEGITRHFTVTYTPQQNGLAERFNRTIMERTRCLLTNASLPLKFWGEAAQ 442

Query: 123  --------SPSTTLDLKTPQE--------------------------------------- 182
                    SPST L+LKTPQE                                       
Sbjct: 443  TACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIG 502

Query: 183  ---GVKGYKIWCLEKGINKCIISRDVE-----------------------TEVRVDLEVR 242
               GVKGYK+WC+EKG+NKCIISRDV                        TEVR+  EVR
Sbjct: 503  YPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVR 562

Query: 243  PSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTR 302
            PSI LD   +Q PLVS+ E T QSEFDGIQSQQERILIDEG   EESSSNNDLQNYQLTR
Sbjct: 563  PSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERILIDEGAFIEESSSNNDLQNYQLTR 622

Query: 303  DRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSL 362
            DRVQRER APIRYGYADLVAYALTCAADSIEA+PLTFEE IV DSKKQWKDAME ELFSL
Sbjct: 623  DRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSL 682

Query: 363  QKNQTWSLVPKPHNQKLIQSKWIYKIKS---------------AKGYTQKEGVDFNEIFS 422
             KNQTWSLVPKP NQKLIQSKWIYKIK                AKGYTQKEGVDF+EIFS
Sbjct: 683  HKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFS 742

Query: 423  PVVRHSSIRLILFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 482
            PVVRHSSIRLIL I VHFDMFIEQMDVTT FLHGELEEVIYMAQPKGYEVKGKEDMVCRL
Sbjct: 743  PVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 802

Query: 483  HKSIYGLKQSPRQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVS 542
            HKS+YGLKQSPRQWYIRFDTFILKQGF+RNSYDACVYWK SQ+GT+IYLLLYVDDMILVS
Sbjct: 803  HKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVS 862

Query: 543  KDYAEICQLKKQLSSEYEMKD--------------------------------------- 574
            KDYAEIC+LKKQLS+E+EMKD                                       
Sbjct: 863  KDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLEKYNMS 922

[Close]

BLAST of CSPI05G11940 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 885.9 bits (2288), Expect = 9.0e-254
Identity = 503/802 (62.72%), Postives = 529/802 (65.96%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMGG RYF+SIID FSRKVW+YPLKQKDE F KFLEWKKQVENQTGR+VK          
Sbjct: 493  SMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEF 552

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 553  VNNKFNQFCKSEGITRHFTVTYTPQQNGLAERFNRTIMERTRCLLTNASLPLKFWGEAAQ 612

Query: 123  --------SPSTTLDLKTPQE--------------------------------------- 182
                    SPST L+LKTPQE                                       
Sbjct: 613  TACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIG 672

Query: 183  ---GVKGYKIWCLEKGINKCIISRDVE-----------------------TEVRVDLEVR 242
               GVKGYK+WC+EKG+NKCIISRDV                        TEVR+  EVR
Sbjct: 673  YPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVR 732

Query: 243  PSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTR 302
            PSI LD   +Q PLVS+ E T QSEFDGIQSQQERILIDEG   EESSSNNDLQNYQLTR
Sbjct: 733  PSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERILIDEGAFIEESSSNNDLQNYQLTR 792

Query: 303  DRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSL 362
            DRVQRER APIRYGYADLVAYALTCAADSIEA+PLTFEE IV DSKKQWKDAME ELFSL
Sbjct: 793  DRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSL 852

Query: 363  QKNQTWSLVPKPHNQKLIQSKWIYKIKS---------------AKGYTQKEGVDFNEIFS 422
             KNQTWSLVPKP NQKLIQSKWIYKIK                AKGYTQKEGVDF+EIFS
Sbjct: 853  HKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFS 912

Query: 423  PVVRHSSIRLILFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 482
            PVVRHSSIRLIL I VHFDMFIEQMDVTT FLHGELEEVIYMAQPKGYEVKGKEDMVCRL
Sbjct: 913  PVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 972

Query: 483  HKSIYGLKQSPRQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVS 542
            HKS+YGLKQSPRQWYIRFDTFILKQGF+RNSYDACVYWK SQ+GT+IYLLLYVDDMILVS
Sbjct: 973  HKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVS 1032

Query: 543  KDYAEICQLKKQLSSEYEMKD--------------------------------------- 574
            KDYAEIC+LKKQLS+E+EMKD                                       
Sbjct: 1033 KDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLEKYNMS 1092

[Close]

BLAST of CSPI05G11940 vs. ExPASy TrEMBL
Match: A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)

HSP 1 Score: 833.2 bits (2151), Expect = 7.0e-238
Identity = 479/787 (60.86%), Postives = 504/787 (64.04%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMGG RYF+SIID FSRKVW+YPLKQKDE F KFLEWKKQVENQTGR+VK          
Sbjct: 493  SMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEF 552

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 553  VNNKFNQFCKSEGITRHFTVTYTPQQNGLAERFNRTIMERTRCLLTNASLPLKFWGEAAQ 612

Query: 123  --------SPSTTLDLKTPQE--------------------------------------- 182
                    SPST L+LKTPQE                                       
Sbjct: 613  TACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIG 672

Query: 183  ---GVKGYKIWCLEKGINKCIISRDVE-----------------------TEVRVDLEVR 242
               GVKGYK+WC+EKG+NKCIISRDV                        TEVR+  EVR
Sbjct: 673  YPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVR 732

Query: 243  PSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTR 302
            PSI LD   +Q PLVS+ E T QSEFDGIQSQQERILIDE    EESSSNNDLQNYQLTR
Sbjct: 733  PSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERILIDERAFIEESSSNNDLQNYQLTR 792

Query: 303  DRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSL 362
            DRVQRER APIRYGYADLVAYALTCAADSIEA+PLTFEE IV DSKKQWKDAME ELFSL
Sbjct: 793  DRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSL 852

Query: 363  QKNQTWSLVPKPHNQKLIQSKWIYKIKSAKGYTQKEGVDFNEIFSPVVRHSSIRLILFIV 422
             KNQTWSLVPKP NQKLIQSKWIYKIK   G   K                  RLIL I 
Sbjct: 853  HKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKP-------------RYKARLILSIA 912

Query: 423  VHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYGLKQSPRQWY 482
            VHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKS+YGLKQSPRQWY
Sbjct: 913  VHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWY 972

Query: 483  IRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSS 542
            I FDTFILKQGF+RNSYDACVYWK SQ+GT+IYLLLYVDDMILVSKDYA IC+LKKQLS+
Sbjct: 973  ISFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAGICELKKQLSN 1032

Query: 543  EYEMKD-----------------------------------------------LASHLKL 574
            E+EMKD                                               LASH +L
Sbjct: 1033 EFEMKDLGELKRILGMDVKRDREKGLLTISQESYVIKLLEKYNMSSSKAVSTPLASHFRL 1092

[Close]

BLAST of CSPI05G11940 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 830.9 bits (2145), Expect = 3.5e-237
Identity = 476/776 (61.34%), Postives = 502/776 (64.69%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMGG RYF+SIID FSRKVW+YPLKQKDE F KFLEWKKQVENQTGR+VK          
Sbjct: 493  SMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEF 552

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 553  VNNKFNQFCKSEGITRHFTVTYTPQQNGLAERFNRTIMERTRCLLTNASLPLKFWGEAAQ 612

Query: 123  --------SPSTTLDLKTPQE--------------------------------------- 182
                    SPST L+LKTPQE                                       
Sbjct: 613  TACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIG 672

Query: 183  ---GVKGYKIWCLEKGINKCIISRDVE-----------------------TEVRVDLEVR 242
               GVKGYK+WC+EKG+NKCIISRDV                        TEVR+  EVR
Sbjct: 673  YPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVR 732

Query: 243  PSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTR 302
            PSI LD   +Q PLVS+ E T QSEFDGIQSQQERILIDEG   EESSSNNDLQNYQLTR
Sbjct: 733  PSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERILIDEGAFIEESSSNNDLQNYQLTR 792

Query: 303  DRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSL 362
            DRVQRER APIRYGYADLVAYALTCAADSIEA+PLTFEE IV DSKKQWKDAME ELFSL
Sbjct: 793  DRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSL 852

Query: 363  QKNQTWSLVPKPHNQKLIQSKWIYKIKS---------------AKGYTQKEGVDFNEIFS 422
             KNQTWSLVPKP NQKLIQSKWIYKIK                AKGYTQKEGVDF+EIFS
Sbjct: 853  HKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFS 912

Query: 423  PVVRHSSIRLILFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 482
            PVVRHSSIRLIL I VHFDMFIEQMDVTT FLHGELEEVIYMAQPKGYEVKGKEDMVCRL
Sbjct: 913  PVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 972

Query: 483  HKSIYGLKQSPRQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVS 542
            HKS+YGLKQSPRQWYIRFDTFILKQGF+RNSYDACVYWK SQ+GT+IYLLLYVDDMILVS
Sbjct: 973  HKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVS 1032

Query: 543  KDYAEICQLKKQLSSEYEMKD--------------------------------------- 574
            KDYAEIC+LKKQLS+E+EMKD                                       
Sbjct: 1033 KDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLEKYNMS 1092

[Close]

BLAST of CSPI05G11940 vs. ExPASy TrEMBL
Match: A0A5A7VGM4 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00240 PE=4 SV=1)

HSP 1 Score: 713.0 bits (1839), Expect = 1.0e-201
Identity = 422/679 (62.15%), Postives = 461/679 (67.89%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMG  RYF+SIID FSRKVW+YPLKQKDE F KFLEW+KQVENQTGR+VK          
Sbjct: 411  SMGSSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWQKQVENQTGRKVKYLMTDNGLEF 470

Query: 63   ------------------------------------------SPSTTLDLKTPQE----- 122
                                                      SPS+ L+LKTPQ+     
Sbjct: 471  VNNKSNHFCKSEGITRHFTVTYTPQQNGLDERFNRTIMERTRSPSSALNLKTPQKVWIGK 530

Query: 123  ----------GVKGY---KIWCLEKGINKCIISRDVE--TEVRVDLEVRPSIGLDVSSDQ 182
                      G   Y   K   L K   KC+     +   EVR+ LEVRP + LD   DQ
Sbjct: 531  APSLEHLRVFGCIAYAHVKDGKLNKRALKCMFIGYPQGVKEVRIALEVRPLVDLD---DQ 590

Query: 183  LPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTRDRVQRERQAPI 242
             PLVS+ E T QSEFD +QSQQERILIDEG   EE+ SNNDLQNYQLTRDRVQRER    
Sbjct: 591  PPLVSEIEDTQQSEFDCVQSQQERILIDEGAFVEENLSNNDLQNYQLTRDRVQRER---- 650

Query: 243  RYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSLQKNQTWSLVPK 302
               +ADLVAYALTCAA+SIEA+ LTFEE IV +SKKQWKDAMEAELFSL KNQTWSLVPK
Sbjct: 651  ---HADLVAYALTCAANSIEAESLTFEEAIVSNSKKQWKDAMEAELFSLHKNQTWSLVPK 710

Query: 303  PHNQKLIQSKWIYKIKS---------------AKGYTQKEGVDFNEIFSPVVRHSSIRLI 362
            P NQKLIQSKWIYKIK                AKGYTQKEGVDF+EIFSPVVRHSSIRLI
Sbjct: 711  PPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLI 770

Query: 363  LFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYGLKQSP 422
            L IVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMV RLHKS+YGLKQSP
Sbjct: 771  LSIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVFRLHKSLYGLKQSP 830

Query: 423  RQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKK 482
            RQWYIRFDTFILKQGF+RNSYDACVYWKLSQ+GT+IYLLLYVDDMILVSKDY EIC+LKK
Sbjct: 831  RQWYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVSKDYVEICELKK 890

Query: 483  QLSSEYEMKD----------------LASHLKLSSSQCPVTEQERLE----MSNIP-YCN 542
            QLS+E+EMKD                LASH +LSSSQCPVT+QER +    MS I  + +
Sbjct: 891  QLSNEFEMKDLGELKRILGMDAISTPLASHFRLSSSQCPVTKQERPDLGYAMSMISRFMS 950

Query: 543  AVGSTMYLMICTRPDLGYAMSSASVSLCFIKDCDKSTLLEGFTNADNNVADLAKRRSLSG 574
              G   +  +  +  L Y   SASVSLC+ +DCDKSTLLEGFT+A N VADL KRRSLSG
Sbjct: 951  NPGKEHWKAV--KWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDA-NYVADLDKRRSLSG 1010

[Close]

BLAST of CSPI05G11940 vs. NCBI nr
Match: TYK13826.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 885.9 bits (2288), Expect = 1.9e-253
Identity = 503/802 (62.72%), Postives = 529/802 (65.96%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMGG RYF+SIID FSRKVW+YPLKQKDE F KFLEWKKQVENQTGR+VK          
Sbjct: 323  SMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEF 382

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 383  VNNKFNQFCKSEGITRHFTVTYTPQQNGLAERFNRTIMERTRCLLTNASLPLKFWGEAAQ 442

Query: 123  --------SPSTTLDLKTPQE--------------------------------------- 182
                    SPST L+LKTPQE                                       
Sbjct: 443  TACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIG 502

Query: 183  ---GVKGYKIWCLEKGINKCIISRDVE-----------------------TEVRVDLEVR 242
               GVKGYK+WC+EKG+NKCIISRDV                        TEVR+  EVR
Sbjct: 503  YPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVR 562

Query: 243  PSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTR 302
            PSI LD   +Q PLVS+ E T QSEFDGIQSQQERILIDEG   EESSSNNDLQNYQLTR
Sbjct: 563  PSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERILIDEGAFIEESSSNNDLQNYQLTR 622

Query: 303  DRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSL 362
            DRVQRER APIRYGYADLVAYALTCAADSIEA+PLTFEE IV DSKKQWKDAME ELFSL
Sbjct: 623  DRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSL 682

Query: 363  QKNQTWSLVPKPHNQKLIQSKWIYKIKS---------------AKGYTQKEGVDFNEIFS 422
             KNQTWSLVPKP NQKLIQSKWIYKIK                AKGYTQKEGVDF+EIFS
Sbjct: 683  HKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFS 742

Query: 423  PVVRHSSIRLILFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 482
            PVVRHSSIRLIL I VHFDMFIEQMDVTT FLHGELEEVIYMAQPKGYEVKGKEDMVCRL
Sbjct: 743  PVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 802

Query: 483  HKSIYGLKQSPRQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVS 542
            HKS+YGLKQSPRQWYIRFDTFILKQGF+RNSYDACVYWK SQ+GT+IYLLLYVDDMILVS
Sbjct: 803  HKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVS 862

Query: 543  KDYAEICQLKKQLSSEYEMKD--------------------------------------- 574
            KDYAEIC+LKKQLS+E+EMKD                                       
Sbjct: 863  KDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLEKYNMS 922

[Close]

BLAST of CSPI05G11940 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 885.9 bits (2288), Expect = 1.9e-253
Identity = 503/802 (62.72%), Postives = 529/802 (65.96%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMGG RYF+SIID FSRKVW+YPLKQKDE F KFLEWKKQVENQTGR+VK          
Sbjct: 493  SMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEF 552

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 553  VNNKFNQFCKSEGITRHFTVTYTPQQNGLAERFNRTIMERTRCLLTNASLPLKFWGEAAQ 612

Query: 123  --------SPSTTLDLKTPQE--------------------------------------- 182
                    SPST L+LKTPQE                                       
Sbjct: 613  TACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIG 672

Query: 183  ---GVKGYKIWCLEKGINKCIISRDVE-----------------------TEVRVDLEVR 242
               GVKGYK+WC+EKG+NKCIISRDV                        TEVR+  EVR
Sbjct: 673  YPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVR 732

Query: 243  PSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTR 302
            PSI LD   +Q PLVS+ E T QSEFDGIQSQQERILIDEG   EESSSNNDLQNYQLTR
Sbjct: 733  PSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERILIDEGAFIEESSSNNDLQNYQLTR 792

Query: 303  DRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSL 362
            DRVQRER APIRYGYADLVAYALTCAADSIEA+PLTFEE IV DSKKQWKDAME ELFSL
Sbjct: 793  DRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSL 852

Query: 363  QKNQTWSLVPKPHNQKLIQSKWIYKIKS---------------AKGYTQKEGVDFNEIFS 422
             KNQTWSLVPKP NQKLIQSKWIYKIK                AKGYTQKEGVDF+EIFS
Sbjct: 853  HKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFS 912

Query: 423  PVVRHSSIRLILFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 482
            PVVRHSSIRLIL I VHFDMFIEQMDVTT FLHGELEEVIYMAQPKGYEVKGKEDMVCRL
Sbjct: 913  PVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 972

Query: 483  HKSIYGLKQSPRQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVS 542
            HKS+YGLKQSPRQWYIRFDTFILKQGF+RNSYDACVYWK SQ+GT+IYLLLYVDDMILVS
Sbjct: 973  HKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVS 1032

Query: 543  KDYAEICQLKKQLSSEYEMKD--------------------------------------- 574
            KDYAEIC+LKKQLS+E+EMKD                                       
Sbjct: 1033 KDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLEKYNMS 1092

[Close]

BLAST of CSPI05G11940 vs. NCBI nr
Match: KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 833.2 bits (2151), Expect = 1.4e-237
Identity = 479/787 (60.86%), Postives = 504/787 (64.04%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMGG RYF+SIID FSRKVW+YPLKQKDE F KFLEWKKQVENQTGR+VK          
Sbjct: 493  SMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEF 552

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 553  VNNKFNQFCKSEGITRHFTVTYTPQQNGLAERFNRTIMERTRCLLTNASLPLKFWGEAAQ 612

Query: 123  --------SPSTTLDLKTPQE--------------------------------------- 182
                    SPST L+LKTPQE                                       
Sbjct: 613  TACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIG 672

Query: 183  ---GVKGYKIWCLEKGINKCIISRDVE-----------------------TEVRVDLEVR 242
               GVKGYK+WC+EKG+NKCIISRDV                        TEVR+  EVR
Sbjct: 673  YPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVR 732

Query: 243  PSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTR 302
            PSI LD   +Q PLVS+ E T QSEFDGIQSQQERILIDE    EESSSNNDLQNYQLTR
Sbjct: 733  PSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERILIDERAFIEESSSNNDLQNYQLTR 792

Query: 303  DRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSL 362
            DRVQRER APIRYGYADLVAYALTCAADSIEA+PLTFEE IV DSKKQWKDAME ELFSL
Sbjct: 793  DRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSL 852

Query: 363  QKNQTWSLVPKPHNQKLIQSKWIYKIKSAKGYTQKEGVDFNEIFSPVVRHSSIRLILFIV 422
             KNQTWSLVPKP NQKLIQSKWIYKIK   G   K                  RLIL I 
Sbjct: 853  HKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKP-------------RYKARLILSIA 912

Query: 423  VHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYGLKQSPRQWY 482
            VHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKS+YGLKQSPRQWY
Sbjct: 913  VHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSLYGLKQSPRQWY 972

Query: 483  IRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSS 542
            I FDTFILKQGF+RNSYDACVYWK SQ+GT+IYLLLYVDDMILVSKDYA IC+LKKQLS+
Sbjct: 973  ISFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVSKDYAGICELKKQLSN 1032

Query: 543  EYEMKD-----------------------------------------------LASHLKL 574
            E+EMKD                                               LASH +L
Sbjct: 1033 EFEMKDLGELKRILGMDVKRDREKGLLTISQESYVIKLLEKYNMSSSKAVSTPLASHFRL 1092

[Close]

BLAST of CSPI05G11940 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 830.9 bits (2145), Expect = 7.1e-237
Identity = 476/776 (61.34%), Postives = 502/776 (64.69%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMGG RYF+SIID FSRKVW+YPLKQKDE F KFLEWKKQVENQTGR+VK          
Sbjct: 493  SMGGSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWKKQVENQTGRKVKYLRTDNGLEF 552

Query: 63   ------------------------------------------------------------ 122
                                                                        
Sbjct: 553  VNNKFNQFCKSEGITRHFTVTYTPQQNGLAERFNRTIMERTRCLLTNASLPLKFWGEAAQ 612

Query: 123  --------SPSTTLDLKTPQE--------------------------------------- 182
                    SPST L+LKTPQE                                       
Sbjct: 613  TACYLINRSPSTALNLKTPQEVWTGKAPSLEHLRVFGCTAYAHVKDGKLNKRALKCMFIG 672

Query: 183  ---GVKGYKIWCLEKGINKCIISRDVE-----------------------TEVRVDLEVR 242
               GVKGYK+WC+EKG+NKCIISRDV                        TEVR+  EVR
Sbjct: 673  YPQGVKGYKLWCIEKGMNKCIISRDVTFNETEMPYCVKEQQKQQTGDHVVTEVRIASEVR 732

Query: 243  PSIGLDVSSDQLPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTR 302
            PSI LD   +Q PLVS+ E T QSEFDGIQSQQERILIDEG   EESSSNNDLQNYQLTR
Sbjct: 733  PSIDLD---NQPPLVSEIEDTQQSEFDGIQSQQERILIDEGAFIEESSSNNDLQNYQLTR 792

Query: 303  DRVQRERQAPIRYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSL 362
            DRVQRER APIRYGYADLVAYALTCAADSIEA+PLTFEE IV DSKKQWKDAME ELFSL
Sbjct: 793  DRVQRERHAPIRYGYADLVAYALTCAADSIEAEPLTFEEAIVSDSKKQWKDAMEEELFSL 852

Query: 363  QKNQTWSLVPKPHNQKLIQSKWIYKIKS---------------AKGYTQKEGVDFNEIFS 422
             KNQTWSLVPKP NQKLIQSKWIYKIK                AKGYTQKEGVDF+EIFS
Sbjct: 853  HKNQTWSLVPKPPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFS 912

Query: 423  PVVRHSSIRLILFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 482
            PVVRHSSIRLIL I VHFDMFIEQMDVTT FLHGELEEVIYMAQPKGYEVKGKEDMVCRL
Sbjct: 913  PVVRHSSIRLILSIAVHFDMFIEQMDVTTAFLHGELEEVIYMAQPKGYEVKGKEDMVCRL 972

Query: 483  HKSIYGLKQSPRQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVS 542
            HKS+YGLKQSPRQWYIRFDTFILKQGF+RNSYDACVYWK SQ+GT+IYLLLYVDDMILVS
Sbjct: 973  HKSLYGLKQSPRQWYIRFDTFILKQGFHRNSYDACVYWKQSQKGTYIYLLLYVDDMILVS 1032

Query: 543  KDYAEICQLKKQLSSEYEMKD--------------------------------------- 574
            KDYAEIC+LKKQLS+E+EMKD                                       
Sbjct: 1033 KDYAEICELKKQLSNEFEMKDLGELKRILGMDVKRDKEKGLLTISQESYVIKLLEKYNMS 1092

[Close]

BLAST of CSPI05G11940 vs. NCBI nr
Match: KAA0067243.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] >TYK10853.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 713.0 bits (1839), Expect = 2.2e-201
Identity = 422/679 (62.15%), Postives = 461/679 (67.89%), Query Frame = 0


Query: 3    SMGGLRYFLSIIDAFSRKVWMYPLKQKDETFEKFLEWKKQVENQTGREVK---------- 62
            SMG  RYF+SIID FSRKVW+YPLKQKDE F KFLEW+KQVENQTGR+VK          
Sbjct: 411  SMGSSRYFISIIDDFSRKVWIYPLKQKDEAFGKFLEWQKQVENQTGRKVKYLMTDNGLEF 470

Query: 63   ------------------------------------------SPSTTLDLKTPQE----- 122
                                                      SPS+ L+LKTPQ+     
Sbjct: 471  VNNKSNHFCKSEGITRHFTVTYTPQQNGLDERFNRTIMERTRSPSSALNLKTPQKVWIGK 530

Query: 123  ----------GVKGY---KIWCLEKGINKCIISRDVE--TEVRVDLEVRPSIGLDVSSDQ 182
                      G   Y   K   L K   KC+     +   EVR+ LEVRP + LD   DQ
Sbjct: 531  APSLEHLRVFGCIAYAHVKDGKLNKRALKCMFIGYPQGVKEVRIALEVRPLVDLD---DQ 590

Query: 183  LPLVSQTEATHQSEFDGIQSQQERILIDEGLHSEESSSNNDLQNYQLTRDRVQRERQAPI 242
             PLVS+ E T QSEFD +QSQQERILIDEG   EE+ SNNDLQNYQLTRDRVQRER    
Sbjct: 591  PPLVSEIEDTQQSEFDCVQSQQERILIDEGAFVEENLSNNDLQNYQLTRDRVQRER---- 650

Query: 243  RYGYADLVAYALTCAADSIEAQPLTFEETIVYDSKKQWKDAMEAELFSLQKNQTWSLVPK 302
               +ADLVAYALTCAA+SIEA+ LTFEE IV +SKKQWKDAMEAELFSL KNQTWSLVPK
Sbjct: 651  ---HADLVAYALTCAANSIEAESLTFEEAIVSNSKKQWKDAMEAELFSLHKNQTWSLVPK 710

Query: 303  PHNQKLIQSKWIYKIKS---------------AKGYTQKEGVDFNEIFSPVVRHSSIRLI 362
            P NQKLIQSKWIYKIK                AKGYTQKEGVDF+EIFSPVVRHSSIRLI
Sbjct: 711  PPNQKLIQSKWIYKIKPGTGGNSKPRYKARLVAKGYTQKEGVDFHEIFSPVVRHSSIRLI 770

Query: 363  LFIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVCRLHKSIYGLKQSP 422
            L IVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMV RLHKS+YGLKQSP
Sbjct: 771  LSIVVHFDMFIEQMDVTTTFLHGELEEVIYMAQPKGYEVKGKEDMVFRLHKSLYGLKQSP 830

Query: 423  RQWYIRFDTFILKQGFYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKK 482
            RQWYIRFDTFILKQGF+RNSYDACVYWKLSQ+GT+IYLLLYVDDMILVSKDY EIC+LKK
Sbjct: 831  RQWYIRFDTFILKQGFHRNSYDACVYWKLSQKGTYIYLLLYVDDMILVSKDYVEICELKK 890

Query: 483  QLSSEYEMKD----------------LASHLKLSSSQCPVTEQERLE----MSNIP-YCN 542
            QLS+E+EMKD                LASH +LSSSQCPVT+QER +    MS I  + +
Sbjct: 891  QLSNEFEMKDLGELKRILGMDAISTPLASHFRLSSSQCPVTKQERPDLGYAMSMISRFMS 950

Query: 543  AVGSTMYLMICTRPDLGYAMSSASVSLCFIKDCDKSTLLEGFTNADNNVADLAKRRSLSG 574
              G   +  +  +  L Y   SASVSLC+ +DCDKSTLLEGFT+A N VADL KRRSLSG
Sbjct: 951  NPGKEHWKAV--KWVLRYLKGSASVSLCYSRDCDKSTLLEGFTDA-NYVADLDKRRSLSG 1010

[Close]

BLAST of CSPI05G11940 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 193.0 bits (489), Expect = 7.0e-49
Identity = 154/526 (29.28%), Postives = 254/526 (48.29%), Query Frame = 0


Query: 129 QSQQERILIDEGLHSEESSSNNDLQNYQLTRDRVQRERQAPIRYGYADLVAYALTCAADS 188
           ++++   L D   HS  S + +D+  +      +  E+ +P+ + +       L C A +
Sbjct: 37  RTRKPAYLQDYYCHSVASLTIHDISQF------LSYEKVSPLYHSF-------LVCIAKA 96

Query: 189 IEAQPLTFEETIVYDSKKQWKDAMEAELFSLQKNQTWSLVPKPHNQKLIQSKWIYKIK-- 248
            E  P T+ E   +     W  AM+ E+ +++   TW +   P N+K I  KW+YKIK  
Sbjct: 97  KE--PSTYNEAKEF---LVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYN 156

Query: 249 ------------SAKGYTQKEGVDFNEIFSPVVRHSSIRLILFIVVHFDMFIEQMDVTTT 308
                        AKGYTQ+EG+DF E FSPV + +S++LIL I   ++  + Q+D++  
Sbjct: 157 SDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNA 216

Query: 309 FLHGELEEVIYMAQPKGYEVKGKEDM----VCRLHKSIYGLKQSPRQWYIRFDTFILKQG 368
           FL+G+L+E IYM  P GY  +  + +    VC L KSIYGLKQ+ RQW+++F   ++  G
Sbjct: 217 FLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFG 276

Query: 369 FYRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEYEMKDLAS-- 428
           F ++  D   + K++    F+ +L+YVDD+I+ S + A + +LK QL S ++++DL    
Sbjct: 277 FVQSHSDHTYFLKITAT-LFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLK 336

Query: 429 ---HLKLSSSQCPVTEQER--------------LEMSNIP-------------------- 488
               L+++ S   +   +R               + S++P                    
Sbjct: 337 YFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKA 396

Query: 489 YCNAVGSTMYLMICTRPDLGYAMSSAS-----------VSLCFIKDCDKSTLLEGFTNAD 548
           Y   +G  MYL I TR D+ +A++  S            ++  I    K T+ +G   + 
Sbjct: 397 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 456

Query: 549 NNVADLA------------KRRSLSGHAFRLYGNIVSWKVTLQPVVALSTTESEYISLGE 574
                L              RRS +G+   L  +++SWK   Q VV+ S+ E+EY +L  
Sbjct: 457 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 516

[Close]

BLAST of CSPI05G11940 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 67.8 bits (164), Expect = 3.4e-11
Identity = 42/120 (35.00%), Postives = 68/120 (56.67%), Query Frame = 0


Query: 180 YALTCAADSIEAQPLTFEETIVYDSKKQ-WKDAMEAELFSLQKNQTWSLVPKPHNQKLIQ 239
           Y+LT    +I+ +P    +++++  K   W  AM+ EL +L +N+TW LVP P NQ ++ 
Sbjct: 16  YSLTITT-TIKKEP----KSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILG 75

Query: 240 SKWIYKIK--------------SAKGYTQKEGVDFNEIFSPVVRHSSIRLILFIVVHFDM 285
            KW++K K               AKG+ Q+EG+ F E +SPVVR ++IR IL +    ++
Sbjct: 76  CKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQLEV 130

[Close]

BLAST of CSPI05G11940 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.5 bits (132), Expect = 1.8e-07
Identity = 64/226 (28.32%), Postives = 91/226 (40.27%), Query Frame = 0


Query: 371 IYLLLYVDDMILVSKDYAEICQLKKQLSSEYEMKDLA--------------SHLKLS--- 430
           +YLLLYVDD++L       +  L  QLSS + MKDL               S L LS   
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 431 -----------------SSQCPVTEQERLEMSNIP----YCNAVGSTMYLMICTRPDLGY 490
                            S+  P+     +  +  P    + + VG+  YL + TRPD+ Y
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTL-TRPDISY 120

Query: 491 AMSSASVSL--CFIKDCD---------KSTLLEGF---TNADNNVADL---------AKR 536
           A++     +    + D D         K T+  G     N+  NV            + R
Sbjct: 121 AVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTR 180

The following BLAST results are available for this feature:

BLAST of CSPI05G11940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.4e-94	31.78	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.5e-53	28.70	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.9e-43	29.75	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.2e-40	28.29	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	5.0e-15	38.97	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of CSPI05G11940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CTV2	9.0e-254	62.72	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488...	[more]
A0A5A7UB25	9.0e-254	62.72	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U2U7	7.0e-238	60.86	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]
A0A5D3DNU1	3.5e-237	61.34	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7VGM4	1.0e-201	62.15	Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku...	[more]

BLAST of CSPI05G11940 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK13826.1	1.9e-253	62.72	putative polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	1.9e-253	62.72	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0047995.1	1.4e-237	60.86	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]
TYK25306.1	7.1e-237	61.34	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0067243.1	2.2e-201	62.15	retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa...	[more]

BLAST of CSPI05G11940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	7.0e-49	29.28	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.4e-11	35.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	1.8e-07	28.32	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 222..408 e-value: 3.8E-51 score: 174.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 178..408
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 474..573 e-value: 5.01019E-37 score: 132.592
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 3..49
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 249..397

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G11940.1	CSPI05G11940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:0005488	binding