CSPI05G11860 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G11860
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Reverse transcriptase
Location	Chr5: 10519228 .. 10519497 (-)
RNA-Seq Expression	CSPI05G11860
Synteny	CSPI05G11860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTCGCAGACTTTATGGATTCAAGAAATATGCTTCCAACACGAGAATTAAAAGTTTTAGGAGCTAAGGTGTTTAGAGGATCAACTGTTTCAAATGAAGCAAATGAATGGGTCGGTGGATTGATGGAATGCTTCACGATTATTAAGTGCCCTGCCGATCAACAGATGGAACTAGCAGAAACTTTGTTAGAAGGAGAAGCAAAGGAATGGTGGAAAACAATTAAGAAAAGATTGTCTAATGAAGAGAGACAAGACTTGGATCTGTTT

mRNA sequence

ATGTCACTCGCAGACTTTATGGATTCAAGAAATATGCTTCCAACACGAGAATTAAAAGTTTTAGGAGCTAAGGTGTTTAGAGGATCAACTGTTTCAAATGAAGCAAATGAATGGGTCGGTGGATTGATGGAATGCTTCACGATTATTAAGTGCCCTGCCGATCAACAGATGGAACTAGCAGAAACTTTGTTAGAAGGAGAAGCAAAGGAATGGTGGAAAACAATTAAGAAAAGATTGTCTAATGAAGAGAGACAAGACTTGGATCTGTTT

Coding sequence (CDS)

ATGTCACTCGCAGACTTTATGGATTCAAGAAATATGCTTCCAACACGAGAATTAAAAGTTTTAGGAGCTAAGGTGTTTAGAGGATCAACTGTTTCAAATGAAGCAAATGAATGGGTCGGTGGATTGATGGAATGCTTCACGATTATTAAGTGCCCTGCCGATCAACAGATGGAACTAGCAGAAACTTTGTTAGAAGGAGAAGCAAAGGAATGGTGGAAAACAATTAAGAAAAGATTGTCTAATGAAGAGAGACAAGACTTGGATCTGTTT

Protein sequence

MSLADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIKKRLSNEERQDLDLF

Homology

[Close]

BLAST of CSPI05G11860 vs. ExPASy TrEMBL
Match: A0A5A7V8M7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00210 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.6e-08
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 4   ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETL 63
           A+  D         LK LGA VF GST S +A  W+  L +CF ++ CP ++++ LA  L
Sbjct: 55  AEPRDPEKAYRIERLKKLGATVFEGSTDSADAENWLNMLEKCFDVMNCPKERKVRLATFL 114

Query: 64  LEGEAKEWWKTIKKRLSNEERQDLDLF 91
           L+ EA+ WWK+I  R S+    D   F
Sbjct: 115 LQKEAEGWWKSILARRSDARALDWQTF 141

[Close]

BLAST of CSPI05G11860 vs. ExPASy TrEMBL
Match: A0A5A7T4N0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3085G00130 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 17  ELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIK 76
           +LK LGA VF GST   +A  W+  L +CF +I CP ++++ LA  LL+ EA+ WWK+I 
Sbjct: 53  QLKKLGATVFEGSTDPADAENWLNMLEKCFDVINCPGERKVRLATFLLQKEAEGWWKSIL 112

Query: 77  KRLSNEERQDLDLF 91
            R S+    D   F
Sbjct: 113 ARRSDARALDWQTF 126

[Close]

BLAST of CSPI05G11860 vs. ExPASy TrEMBL
Match: A0A5D3D3U4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003480 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 4   ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETL 63
           A+  D        +LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  L
Sbjct: 464 AEPSDPEKAYGIEQLKKLGATVFEGSTDPADAENWLNMLEKCFDVVNCPEERKVRLATFL 523

Query: 64  LEGEAKEWWKTIKKRLSNEERQDLDLF 91
           L+ EA+ WWK+I  R S+    D   F
Sbjct: 524 LQKEAEGWWKSILARRSDARALDWQTF 550

[Close]

BLAST of CSPI05G11860 vs. ExPASy TrEMBL
Match: A0A5A7TJC9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G005550 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.0e-08
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 4   ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETL 63
           A+  D        +LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  L
Sbjct: 464 AEPSDPEKAYGIEQLKKLGATVFEGSTDPADAENWLNMLEKCFDVVNCPEERKVRLATFL 523

Query: 64  LEGEAKEWWKTIKKRLSNEERQDLDLF 91
           L+ EA+ WWK+I  R S+    D   F
Sbjct: 524 LQKEAEGWWKSILARRSDARALDWQTF 550

[Close]

BLAST of CSPI05G11860 vs. ExPASy TrEMBL
Match: A0A5D3CVV8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold12915G00010 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.7e-08
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 4   ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETL 63
           A+  D         LK LGA VF GST   +A  W+  L +CF +I CP ++++ LA  L
Sbjct: 40  AEPSDPEKAYGIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVINCPEERKVRLATFL 99

Query: 64  LEGEAKEWWKTIKKRLSNEERQDLDLF 91
           L+ EA+ WWK+I  R S+    D   F
Sbjct: 100 LQKEAEGWWKSILARRSDARALDWQTF 126

[Close]

BLAST of CSPI05G11860 vs. NCBI nr
Match: KAA0062255.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.2e-08
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 4   ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETL 63
           A+  D         LK LGA VF GST S +A  W+  L +CF ++ CP ++++ LA  L
Sbjct: 55  AEPRDPEKAYRIERLKKLGATVFEGSTDSADAENWLNMLEKCFDVMNCPKERKVRLATFL 114

Query: 64  LEGEAKEWWKTIKKRLSNEERQDLDLF 91
           L+ EA+ WWK+I  R S+    D   F
Sbjct: 115 LQKEAEGWWKSILARRSDARALDWQTF 141

[Close]

BLAST of CSPI05G11860 vs. NCBI nr
Match: KAA0042086.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-08
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 4   ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETL 63
           A+  D        +LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  L
Sbjct: 464 AEPSDPEKAYGIEQLKKLGATVFEGSTDPADAENWLNMLEKCFDVVNCPEERKVRLATFL 523

Query: 64  LEGEAKEWWKTIKKRLSNEERQDLDLF 91
           L+ EA+ WWK+I  R S+    D   F
Sbjct: 524 LQKEAEGWWKSILARRSDARALDWQTF 550

[Close]

BLAST of CSPI05G11860 vs. NCBI nr
Match: KAA0037768.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-08
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 17  ELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETLLEGEAKEWWKTIK 76
           +LK LGA VF GST   +A  W+  L +CF +I CP ++++ LA  LL+ EA+ WWK+I 
Sbjct: 53  QLKKLGATVFEGSTDPADAENWLNMLEKCFDVINCPGERKVRLATFLLQKEAEGWWKSIL 112

Query: 77  KRLSNEERQDLDLF 91
            R S+    D   F
Sbjct: 113 ARRSDARALDWQTF 126

[Close]

BLAST of CSPI05G11860 vs. NCBI nr
Match: TYK18029.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 4.2e-08
Identity = 33/87 (37.93%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 4   ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETL 63
           A+  D        +LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  L
Sbjct: 464 AEPSDPEKAYGIEQLKKLGATVFEGSTDPADAENWLNMLEKCFDVVNCPEERKVRLATFL 523

Query: 64  LEGEAKEWWKTIKKRLSNEERQDLDLF 91
           L+ EA+ WWK+I  R S+    D   F
Sbjct: 524 LQKEAEGWWKSILARRSDARALDWQTF 550

[Close]

BLAST of CSPI05G11860 vs. NCBI nr
Match: KAA0035073.1 (uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 5.5e-08
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 4   ADFMDSRNMLPTRELKVLGAKVFRGSTVSNEANEWVGGLMECFTIIKCPADQQMELAETL 63
           A+  D         LK LGA VF GST   +A  W+  L +CF ++ CP ++++ LA  L
Sbjct: 257 AEPSDPEKAYGIERLKKLGATVFEGSTDLADAENWLNMLEKCFDVMNCPEERKVRLATFL 316

Query: 64  LEGEAKEWWKTIKKRLSNEERQDLDLF 91
           L+ EAK WWK+I  R S+    D   F
Sbjct: 317 LQKEAKGWWKSILARRSDARALDWQTF 343

The following BLAST results are available for this feature:

BLAST of CSPI05G11860 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G11860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8M7	1.6e-08	39.08	Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5A7T4N0	2.0e-08	43.24	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold30...	[more]
A0A5D3D3U4	2.0e-08	37.93	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]
A0A5A7TJC9	2.0e-08	37.93	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3CVV8	2.7e-08	39.08	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of CSPI05G11860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062255.1	3.2e-08	39.08	putative Retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042086.1	4.2e-08	37.93	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037768.1	4.2e-08	43.24	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK18029.1	4.2e-08	37.93	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0035073.1	5.5e-08	39.08	uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI05G11860 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G11860.1	CSPI05G11860.1	mRNA