CSPI05G10730 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G10730
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	TMV resistance protein N-like isoform X2
Location	Chr5: 9270296 .. 9270726 (-)
RNA-Seq Expression	CSPI05G10730
Synteny	CSPI05G10730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAATTACGTCAAAACTCGTGAATCTATCACTTCATACTATTAAAGAAAAATCGAATAAGGTTGAAATGCATGACTTAATACAACAAATGGATCTGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGTAACAACTATCTGCACACAAACTTTGAATATGTATATTAATTATAAGAACAACTTTATTATTTTTGAATGACTTGAAATGTTTGTCTGTTTTTTTTTTATATATATAATTTGTAGGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCAATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA

mRNA sequence

GGAATTACGTCAAAACTCGTGAATCTATCACTTCATACTATTAAAGAAAAATCGAATAAGGTTGAAATGCATGACTTAATACAACAAATGGATCTGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCAATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA

Coding sequence (CDS)

GGAATTACGTCAAAACTCGTGAATCTATCACTTCATACTATTAAAGAAAAATCGAATAAGGTTGAAATGCATGACTTAATACAACAAATGGATCTGACAATTGCTCTTTCAAACACTTTCAAATCTGATGAAGAAAAAAGATTGTTGGTTGAAGAGGATGGTATGGATGTCCTAAATGGCAACAACGAAGCAAGAGTAGTTAAAGCCACAAAACTAAATTTTCCTCAACCAATGGAGCTGGAAATTGATTCAAAAGCTATTGAAAGAGTGAAGAACCTGGTAGTGCTCAAAGTTCGGAATGGCCACTTCTTCTAA

Protein sequence

GITSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRNGHFF*

Homology

[Close]

BLAST of CSPI05G10730 vs. ExPASy TrEMBL
Match: A0A0A0KP48 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G207930 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.8e-32
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 30  MDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 89
           MD+TIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER
Sbjct: 1   MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 60

Query: 90  VKNLVVLKVRNGHFF 105
           VKNLVVLKVRNGHFF
Sbjct: 61  VKNLVVLKVRNGHFF 75

[Close]

BLAST of CSPI05G10730 vs. ExPASy TrEMBL
Match: A0A5D3D484 (TMV resistance protein N-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00700 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.0e-27
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 3    TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
            T+KL+NLSL TI E+SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 1563 TTKLMNLSLLTIDERSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 1622

Query: 63   EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
            EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 1623 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 1660

[Close]

BLAST of CSPI05G10730 vs. ExPASy TrEMBL
Match: A0A5A7V6E5 (TMV resistance protein N-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001900 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-27
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 440 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 499

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 500 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 537

[Close]

BLAST of CSPI05G10730 vs. ExPASy TrEMBL
Match: A0A1S3C005 (TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495440 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-27
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 486 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 545

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 546 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 583

[Close]

BLAST of CSPI05G10730 vs. ExPASy TrEMBL
Match: A0A1S3C0G1 (TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495440 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-27
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 476 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 535

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 536 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 573

[Close]

BLAST of CSPI05G10730 vs. NCBI nr
Match: KGN50664.1 (hypothetical protein Csa_005801 [Cucumis sativus])

HSP 1 Score: 148.3 bits (373), Expect = 3.7e-32
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 30  MDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 89
           MD+TIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER
Sbjct: 1   MDMTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEARVVKATKLNFPQPMELEIDSKAIER 60

Query: 90  VKNLVVLKVRNGHFF 105
           VKNLVVLKVRNGHFF
Sbjct: 61  VKNLVVLKVRNGHFF 75

[Close]

BLAST of CSPI05G10730 vs. NCBI nr
Match: TYK18353.1 (TMV resistance protein N-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 6.2e-27
Identity = 67/98 (68.37%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 3    TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
            T+KL+NLSL TI E+SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 1563 TTKLMNLSLLTIDERSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 1622

Query: 63   EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
            EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 1623 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 1660

[Close]

BLAST of CSPI05G10730 vs. NCBI nr
Match: XP_008455236.2 (PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 476 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 535

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 536 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 573

[Close]

BLAST of CSPI05G10730 vs. NCBI nr
Match: XP_008455228.2 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 486 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 545

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 546 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 583

[Close]

BLAST of CSPI05G10730 vs. NCBI nr
Match: KAA0063673.1 (TMV resistance protein N-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 0


Query: 3   TSKLVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNN 62
           T+KL+NLSL TI E SN++EMHDLIQQM  TI LS T KS + KRLL+++D MDVLNGN 
Sbjct: 440 TTKLMNLSLLTIDEHSNRIEMHDLIQQMGRTIHLSETSKSHKRKRLLIKDDVMDVLNGNK 499

Query: 63  EARVVKATKLNFPQPMELEIDSKAIERVKNLVVLKVRN 101
           EAR VK  KLNFP+P ELEIDS+A E+VK LVVL +RN
Sbjct: 500 EARAVKVIKLNFPKPTELEIDSRAFEKVKKLVVLDIRN 537

[Close]

BLAST of CSPI05G10730 vs. TAIR 10
Match: AT5G22690.1 (Disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 43.1 bits (100), Expect = 1.6e-04
Identity = 31/99 (31.31%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 1   GITSKLVNL-SLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEE-DGMDVL 60
           G+T  L NL     I+   + VEMH ++Q+M   I    +     E+  LV+  D +DVL
Sbjct: 465 GVTIGLKNLVDKSLIRIGCDTVEMHSMLQEMGREIVREQSIYEPGEREFLVDSTDILDVL 524

Query: 61  NGNNEARVVKATKLNFPQPMELEIDSKAIERVKNLVVLK 98
           N N   + V     +  +  EL I  +A +R+ NL  L+
Sbjct: 525 NDNTGTKKVLGISFDMSEIEELHIHKRAFKRMPNLRFLR 563

[Close]

BLAST of CSPI05G10730 vs. TAIR 10
Match: AT5G46470.1 (disease resistance protein (TIR-NBS-LRR class) family )

HSP 1 Score: 41.2 bits (95), Expect = 6.0e-04
Identity = 29/93 (31.18%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 6   LVNLSLHTIKEKSNKVEMHDLIQQMDLTIALSNTFKSDEEKRLLVEEDGMDVLNGNNEAR 65
           LV+ SL  I E+ N +EMH L+Q++   I  + + +  E + L+  +D  DVL  N   +
Sbjct: 474 LVDRSL--ICERFNTLEMHSLLQELGKEIVRTQSNQPGEREFLVDLKDICDVLEHNTGTK 533

Query: 66  VVKATKLNFPQPMELEIDSKAIERVKNLVVLKV 99
            V    L+  +  EL I   + + + NL+ LK+
Sbjct: 534 KVLGITLDIDETDELHIHESSFKGMHNLLFLKI 564

The following BLAST results are available for this feature:

BLAST of CSPI05G10730 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G10730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP48	1.8e-32	98.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G207930 PE=4 SV=1	[more]
A0A5D3D484	3.0e-27	68.37	TMV resistance protein N-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7V6E5	6.7e-27	68.37	TMV resistance protein N-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3C005	6.7e-27	68.37	TMV resistance protein N-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495440...	[more]
A0A1S3C0G1	6.7e-27	68.37	TMV resistance protein N-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495440...	[more]

BLAST of CSPI05G10730 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50664.1	3.7e-32	98.67	hypothetical protein Csa_005801 [Cucumis sativus]	[more]
TYK18353.1	6.2e-27	68.37	TMV resistance protein N-like isoform X2 [Cucumis melo var. makuwa]	[more]
XP_008455236.2	1.4e-26	68.37	PREDICTED: TMV resistance protein N-like isoform X2 [Cucumis melo]	[more]
XP_008455228.2	1.4e-26	68.37	PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis melo]	[more]
KAA0063673.1	1.4e-26	68.37	TMV resistance protein N-like isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI05G10730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22690.1	1.6e-04	31.31	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT5G46470.1	6.0e-04	31.18	disease resistance protein (TIR-NBS-LRR class) family	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G10730.1	CSPI05G10730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity