CSPI05G09760 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G09760
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR4
Location	Chr5: 8243412 .. 8243708 (+)
RNA-Seq Expression	CSPI05G09760
Synteny	CSPI05G09760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGGAGACGGTGGAACTTTGCAGGACCCCACGACGGAGGAGCTGCAGGATCCCGGTGGCAATGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTTTTGTTACTCCAAGAGAAGAGGCTTGTACTTAAGTTCTTTTTCTCCTTTCTTTTGCATTGTATATAAAATAGAGATTTAATTTTCTGTTGTGTGTGTTTTCTTTAAAATGCATTTTAGAGGTTAGT

mRNA sequence

ATGGCGGAGGAGACGGTGGAACTTTGCAGGACCCCACGACGGAGGAGCTGCAGGATCCCGGTGGCAATGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTTTTGTTACTCCAAGAGAAGAGGCTTGTACTTAAGTTCTTTTTCTCCTTTCTTTTGCATTGTATATAAAATAGAGATTTAATTTTCTGTTGTGTGTGTTTTCTTTAAAATGCATTTTAGAGGTTAGT

Coding sequence (CDS)

ATGGCGGAGGAGACGGTGGAACTTTGCAGGACCCCACGACGGAGGAGCTGCAGGATCCCGGTGGCAATGGCGTGTCCGTCGGCGCCGAGGAAGAAGCCGGTTTGCTTGAAGCGGAAGGCTCCGCCGAAGGAGGGGTATTTTCGACCGCCGGATTTGGAGGTTTTGTTTGGTTTTGTTACTCCAAGAGAAGAGGCTTGTACTTAA

Protein sequence

MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVTPREEACT*

Homology

[Close]

BLAST of CSPI05G09760 vs. ExPASy Swiss-Prot
Match: Q1JPP8 (Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 GN=SMR4 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 4.9e-12
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVT 60
          MAEE    C TPR    RIPVA  CP  PRKK + ++++ PP+ GYF+PPDLE LF +  
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 PREEAC 67
          PR EAC
Sbjct: 70 PRREAC 71

[Close]

BLAST of CSPI05G09760 vs. ExPASy Swiss-Prot
Match: Q9LNX4 (Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 GN=SMR5 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.7e-07
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 0


Query: 9  CRTPRRRSCRIPVAMACPSAPRKKPVCL---KRKAPPKEGYFRPPDLEVLFGFVTPREEA 66
          C TP R  CRIP    CP   R+K   L   K++ PPK+GYF+PPDL++ F  V   + A
Sbjct: 22 CTTPTRDDCRIPAYPPCPPPVRRKRSLLGFGKKREPPKKGYFQPPDLDLFFSVVAASQAA 81

[Close]

BLAST of CSPI05G09760 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.2e-04
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 4   ETVELC-RTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVT 61
           E  +LC  TP   S RIP  + CP AP+K+ + LK    P+E +F PPDLE +F + T
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVFIYRT 105

[Close]

BLAST of CSPI05G09760 vs. ExPASy TrEMBL
Match: A0A0A0KS84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-30
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVT 60
          MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFR PDLEVLFGFVT
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 PREEACT 68
          PREEACT
Sbjct: 61 PREEACT 67

[Close]

BLAST of CSPI05G09760 vs. ExPASy TrEMBL
Match: B9T003 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVA-MACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVTPREEA 66
          E CRTP RR CRIP A +ACP APRKKPV +K++ PPK+GYF+PPDLE  F  +TPR EA
Sbjct: 6  EGCRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFF-LITPRREA 64

[Close]

BLAST of CSPI05G09760 vs. ExPASy TrEMBL
Match: A0A5N6QF01 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVTPREEAC 66
          E C TPR   CR+P A ACP AP+KKPV  K++APPK GYF+PPDLE LF  V+     C
Sbjct: 12 ESCGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVSDEGSLC 71

[Close]

BLAST of CSPI05G09760 vs. ExPASy TrEMBL
Match: A0A1U8A7K0 (cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LOC104601057 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.7e-12
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVT 60
          + E   E C TP+ R CRIP+A  CP  PRKKP+  K++ PP  GYF+PPDLE+LF  + 
Sbjct: 31 LEEMIEEGCETPKHRDCRIPMASVCPPPPRKKPIYGKKRDPPTNGYFQPPDLELLFA-IA 90

Query: 61 PREEAC 67
          PR EAC
Sbjct: 91 PRREAC 95

[Close]

BLAST of CSPI05G09760 vs. ExPASy TrEMBL
Match: V4LK16 (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015202mg PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.0e-11
Identity = 37/69 (53.62%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 1  MAEETVEL---CRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFG 60
          + E T E+   C TPR R CRIPV   CP  PRKK + ++R+ PP  GYF+PPDLE LF 
Sbjct: 3  VVERTTEMEEGCTTPRSRKCRIPVTSVCPPPPRKKSMVVRRRDPPMNGYFQPPDLETLF- 62

Query: 61 FVTPREEAC 67
          +  PR EAC
Sbjct: 63 YAQPRREAC 70

[Close]

BLAST of CSPI05G09760 vs. NCBI nr
Match: KAE8647993.1 (hypothetical protein Csa_021483 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 65/66 (98.48%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVT 60
          MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFR PDLEVLFGFVT
Sbjct: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRSPDLEVLFGFVT 60

Query: 61 PREEAC 67
          PREEAC
Sbjct: 61 PREEAC 66

[Close]

BLAST of CSPI05G09760 vs. NCBI nr
Match: KAG6600042.1 (Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030712.1 Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVT 60
          MAEE  ++CRTPRR+SCRIPVA+ CP+APRKK V LKRKAPPK+GYFRPPDLEVLFGFV 
Sbjct: 1  MAEEKKDICRTPRRKSCRIPVAVLCPAAPRKKAVSLKRKAPPKDGYFRPPDLEVLFGFVA 60

Query: 61 PR 63
          PR
Sbjct: 61 PR 62

[Close]

BLAST of CSPI05G09760 vs. NCBI nr
Match: XP_021655298.1 (cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis])

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-14
Identity = 40/60 (66.67%), Postives = 48/60 (80.00%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVTPREEAC 66
          E+C TPRRR  RIP A+ACP APRKKPV  K+++PPK+GYF+PPDLE LF  + PR EAC
Sbjct: 6  EVCNTPRRRESRIPAALACPPAPRKKPVFSKKRSPPKDGYFQPPDLEALF-MIAPRREAC 64

[Close]

BLAST of CSPI05G09760 vs. NCBI nr
Match: EEF30808.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVA-MACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVTPREEA 66
          E CRTP RR CRIP A +ACP APRKKPV +K++ PPK+GYF+PPDLE  F  +TPR EA
Sbjct: 6  EGCRTPIRRECRIPAAPVACPPAPRKKPVHIKQRDPPKDGYFQPPDLEAFF-LITPRREA 64

[Close]

BLAST of CSPI05G09760 vs. NCBI nr
Match: KAE7996760.1 (hypothetical protein FH972_001453 [Carpinus fangiana])

HSP 1 Score: 80.5 bits (197), Expect = 6.2e-12
Identity = 35/60 (58.33%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 7  ELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVTPREEAC 66
          E C TPR   CR+P A ACP AP+KKPV  K++APPK GYF+PPDLE LF  V+     C
Sbjct: 12 ESCGTPRHSGCRLPAAFACPPAPKKKPVYFKQQAPPKNGYFQPPDLEALFAMVSDEGSLC 71

[Close]

BLAST of CSPI05G09760 vs. TAIR 10
Match: AT5G02220.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 71.2 bits (173), Expect = 3.5e-13
Identity = 36/66 (54.55%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 1  MAEETVELCRTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVT 60
          MAEE    C TPR    RIPVA  CP  PRKK + ++++ PP+ GYF+PPDLE LF +  
Sbjct: 10 MAEEG---CTTPRSTMYRIPVASVCPPPPRKKLMVVRKRDPPRNGYFQPPDLETLF-YAQ 69

Query: 61 PREEAC 67
          PR EAC
Sbjct: 70 PRREAC 71

[Close]

BLAST of CSPI05G09760 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 1.6e-05
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 0


Query: 4   ETVELC-RTPRRRSCRIPVAMACPSAPRKKPVCLKRKAPPKEGYFRPPDLEVLFGFVT 61
           E  +LC  TP   S RIP  + CP AP+K+ + LK    P+E +F PPDLE +F + T
Sbjct: 49  EDEDLCPTTPTADSVRIPTVIPCPPAPKKRKLTLKVSYGPRE-FFSPPDLETVFIYRT 105

The following BLAST results are available for this feature:

BLAST of CSPI05G09760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1JPP8	4.9e-12	54.55	Cyclin-dependent protein kinase inhibitor SMR4 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LNX4	3.7e-07	45.00	Cyclin-dependent protein kinase inhibitor SMR5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	2.2e-04	44.83	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of CSPI05G09760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS84	3.2e-30	98.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G182660 PE=4 SV=1	[more]
B9T003	1.8e-12	66.67	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0040060 PE=4 SV=1	[more]
A0A5N6QF01	3.0e-12	58.33	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_001453 PE=4 SV=1	[more]
A0A1U8A7K0	6.7e-12	54.55	cyclin-dependent protein kinase inhibitor SMR2 OS=Nelumbo nucifera OX=4432 GN=LO...	[more]
V4LK16	2.0e-11	53.62	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015202mg PE=...	[more]

BLAST of CSPI05G09760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647993.1	2.5e-29	98.48	hypothetical protein Csa_021483 [Cucumis sativus]	[more]
KAG6600042.1	1.2e-20	80.65	Cyclin-dependent protein kinase inhibitor SMR4, partial [Cucurbita argyrosperma ...	[more]
XP_021655298.1	1.3e-14	66.67	cyclin-dependent protein kinase inhibitor SMR4-like [Hevea brasiliensis]	[more]
EEF30808.1	3.6e-12	66.67	conserved hypothetical protein [Ricinus communis]	[more]
KAE7996760.1	6.2e-12	58.33	hypothetical protein FH972_001453 [Carpinus fangiana]	[more]

BLAST of CSPI05G09760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02220.1	3.5e-13	54.55	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]
AT1G60783.1	1.6e-05	44.83	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 5..64
None	No IPR available	PANTHER	PTHR33142:SF56	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR5	coord: 5..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G09760.1	CSPI05G09760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus