CSPI05G09170 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G09170
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 7755384 .. 7755711 (+)
RNA-Seq ExpressionCSPI05G09170
SyntenyCSPI05G09170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGATACTTTGTCCCCGATCGACAGAAAGTAAAATTGATGTCCAAAATTCAAAGAGTCGGCGATATCACCATGACATGATTTGTAAACAAAATGTATCGATAATCAATAAAAGTGCAATTCTGTACAATCATAGAAAAAGGAAACAATCGGGATTCCGAACACCTAGTTTAATGCGTCCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAGGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA

mRNA sequence

ATGCTCGATACTTTGTCCCCGATCGACAGAAAAAAAAGGAAACAATCGGGATTCCGAACACCTAGTTTAATGCGTCCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAGGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA

Coding sequence (CDS)

ATGCTCGATACTTTGTCCCCGATCGACAGAAAAAAAAGGAAACAATCGGGATTCCGAACACCTAGTTTAATGCGTCCCCAAATTAGCGCAACCACAATACGCATTGAGAAATTGAACACGGAGAAGTGGAAAAGAAAGGATTCACCTGAAACAAGCGCCGTGTTCAAAGCCATGAAAATGCTTCAGGCACTCGCTTGTGTATCGCAATGCTTAACTAATTAA

Protein sequence

MLDTLSPIDRKKRKQSGFRTPSLMRPQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKMLQALACVSQCLTN*
Homology
[Close]
BLAST of CSPI05G09170 vs. ExPASy TrEMBL
Match: A0A0A0KLK2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177680 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 1  MLDTLSPIDRKKRKQSGFRTPSLMRPQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60
          MLDTLSPIDRKKRKQSGFRTP LMR QISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM
Sbjct: 1  MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60

Query: 61 LQALACVSQCLTN 74
          LQALACVSQCLTN
Sbjct: 61 LQALACVSQCLTN 73

[Close]
BLAST of CSPI05G09170 vs. NCBI nr
Match: KGN50500.1 (hypothetical protein Csa_000652 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 4.2e-30
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0 

Query: 1  MLDTLSPIDRKKRKQSGFRTPSLMRPQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60
          MLDTLSPIDRKKRKQSGFRTP LMR QISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM
Sbjct: 1  MLDTLSPIDRKKRKQSGFRTPGLMRSQISATTIRIEKLNTEKWKRKDSPETSAVFKAMKM 60

Query: 61 LQALACVSQCLTN 74
          LQALACVSQCLTN
Sbjct: 61 LQALACVSQCLTN 73

The following BLAST results are available for this feature:
BLAST of CSPI05G09170 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G09170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLK22.0e-3097.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G177680 PE=4 SV=1[more]
BLAST of CSPI05G09170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN50500.14.2e-3097.26hypothetical protein Csa_000652 [Cucumis sativus][more]
BLAST of CSPI05G09170 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 71..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G09170.1CSPI05G09170.1mRNA