CSPI05G08950 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G08950
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L10
Location	Chr5: 7598182 .. 7599442 (+)
RNA-Seq Expression	CSPI05G08950
Synteny	CSPI05G08950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAATTGTGGAGTAAAGAAATGAGAGTAGAAGGAGATTTAAGAAAATTGGATCAATTTTATTGAATTCTCATTTCTATCCTTCCCGGCCATCGTCTTCACTCTTCAAACCCAAAGCAGTGATAAGATAAGCCCCAGACTGACCTCTGTCCTCTCTTCTTCTTCTTCTTCTTCCTCAAACCTCTCTGAATTTCCGCCATGGAAGCTTCTCTTATAACCTTTACATCCTTCACACCTCCTTCTTCCTCTTCTACTCAAATTCTAACCCTAAACCGACCCACAAACCCATTGTCCTTCTCTCTTCCCCGCCATTCCACCAATCAAACCCGCCATTATCGTGGTCTCAAGGTTGCCGCCGCCATTTCCCGCACTAAGAAAGAAGAAACCGTCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCTGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTACGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCTAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACATCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGTTATTTGTTCATTCTGAGGAAATTCCGGCCGCGATTAAGCCTTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACTGGAGCGGTTTTCGAAGGGAAATATTATGGACCGGATGAATTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCTAAAATGTTGGGTCTGTTGCAGGCTCCTGCATCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAAGCATACGTGCAGAAATTGGAGGAGCAAGGCGGAGGCGGCGGGCAGTAATGTACATAGAAGAAGAGCTTCCATTGTTACTTGTAAGTTAATATGAAAACCCCCTTCTGAATTAGCTGCCCACAGCAAGTTGTATGATTGATTTATCTTTTTTTTTTTTTTTGGCCTCTTTGTGTTATCAATATAAAGTTGTTATGAGGAGAAATAGAAACTCTATAAGGAATGAGCATTGTAGAATCGGTGTAAAGTTGAAATTCATTGTAAGCTTTTGATTTTTCACAAGCCTAATGATTAATTTATAAGCTTTTTACTTGTGTCTGCTATAGGTTTTGAACATAGGGAAAAGATTGATGTTGGGGTACCGTTGGATAACTGTTTGGTTTTTGAAAGTTGTGTTTGTTTTGTT

mRNA sequence

TTTAAATTGTGGAGTAAAGAAATGAGAGTAGAAGGAGATTTAAGAAAATTGGATCAATTTTATTGAATTCTCATTTCTATCCTTCCCGGCCATCGTCTTCACTCTTCAAACCCAAAGCAGTGATAAGATAAGCCCCAGACTGACCTCTGTCCTCTCTTCTTCTTCTTCTTCTTCCTCAAACCTCTCTGAATTTCCGCCATGGAAGCTTCTCTTATAACCTTTACATCCTTCACACCTCCTTCTTCCTCTTCTACTCAAATTCTAACCCTAAACCGACCCACAAACCCATTGTCCTTCTCTCTTCCCCGCCATTCCACCAATCAAACCCGCCATTATCGTGGTCTCAAGGTTGCCGCCGCCATTTCCCGCACTAAGAAAGAAGAAACCGTCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCTGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTACGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCTAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACATCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGTTATTTGTTCATTCTGAGGAAATTCCGGCCGCGATTAAGCCTTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACTGGAGCGGTTTTCGAAGGGAAATATTATGGACCGGATGAATTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCTAAAATGTTGGGTCTGTTGCAGGCTCCTGCATCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAAGCATACGTGCAGAAATTGGAGGAGCAAGGCGGAGGCGGCGGGCAGTAATGTACATAGAAGAAGAGCTTCCATTGTTACTTGTAAGTTAATATGAAAACCCCCTTCTGAATTAGCTGCCCACAGCAAGTTGTATGATTGATTTATCTTTTTTTTTTTTTTTGGCCTCTTTGTGTTATCAATATAAAGTTGTTATGAGGAGAAATAGAAACTCTATAAGGAATGAGCATTGTAGAATCGGTGTAAAGTTGAAATTCATTGTAAGCTTTTGATTTTTCACAAGCCTAATGATTAATTTATAAGCTTTTTACTTGTGTCTGCTATAGGTTTTGAACATAGGGAAAAGATTGATGTTGGGGTACCGTTGGATAACTGTTTGGTTTTTGAAAGTTGTGTTTGTTTTGTT

Coding sequence (CDS)

ATGGAAGCTTCTCTTATAACCTTTACATCCTTCACACCTCCTTCTTCCTCTTCTACTCAAATTCTAACCCTAAACCGACCCACAAACCCATTGTCCTTCTCTCTTCCCCGCCATTCCACCAATCAAACCCGCCATTATCGTGGTCTCAAGGTTGCCGCCGCCATTTCCCGCACTAAGAAAGAAGAAACCGTCGAAACAGTCAAACAACAGCTCGAAGACTGCTATCTATTGGCTGGAATCAAGTACAAAGGGTTCACCGTCAAGCAATTTCAAGAACTACGTCGATCTCTTCCCGAAACCTCAAAACTCATTGTCGCTAAAAACACGCTCGTTCTTAAAGCGATTGAAGGGACATCTTGGGAAGCTCTAAAGCCCTGTATGAAGGGCATGAATGTTTGGTTATTTGTTCATTCTGAGGAAATTCCGGCCGCGATTAAGCCTTACAGGGATTTCCAGAAGGAGAAGAAGCTCGAGGATAATGATTTCACTGGAGCGGTTTTCGAAGGGAAATATTATGGACCGGATGAATTCAAGGCGTTAGAGACAATGCCGTCGAGAGCGGAGGTTTATGCTAAAATGTTGGGTCTGTTGCAGGCTCCTGCATCAAGCTTGGTCGGAACGATACAGGCTCCGGCGAGGGAATTGTTGATGGTTTTGAAAGCATACGTGCAGAAATTGGAGGAGCAAGGCGGAGGCGGCGGGCAGTAA

Protein sequence

MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKALETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ*

Homology

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BLAST of CSPI05G08950 vs. ExPASy Swiss-Prot
Match: O80362 (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.3e-85
Identity = 162/223 (72.65%), Postives = 188/223 (84.30%), Query Frame = 0


Query: 9   TSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKKEETVETVK 68
           T FT PSS+S       +     S +LP H   + +  + L + +AISRTKKEETVETVK
Sbjct: 4   TFFTLPSSTSHSYPFSLKSHFNNSLTLPTHPHFKPKS-KNLTIRSAISRTKKEETVETVK 63

Query: 69  QQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSWEALKPCMK 128
           QQLEDCYLLAGI YKG TVKQFQELR  LP+T+KL+VAKNTLVLKAIEGT WEALKPCMK
Sbjct: 64  QQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTKWEALKPCMK 123

Query: 129 GMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKALETMPSRAE 188
           GMN WLFVHSEEIPAA+KPYR FQKEKKLE+NDFTGAVFEGK+YGP+EFKALET+P+RAE
Sbjct: 124 GMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKALETLPTRAE 183

Query: 189 VYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGG 232
           +YA++LG L+ PAS++VGTIQAPAR L+MVLKAYV+KLEE+GG
Sbjct: 184 IYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEEGG 225

[Close]

BLAST of CSPI05G08950 vs. ExPASy Swiss-Prot
Match: Q9FY50 (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 8.4e-75
Identity = 145/229 (63.32%), Postives = 177/229 (77.29%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           ME +L++F+S   P     +I TL   T           +N   + R   + +A+SR KK
Sbjct: 1   MEVALLSFSSSLSPLCHQ-RISTLTPKT-----------SNSPNYPRLPVIRSAVSRNKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT W
Sbjct: 61  EETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD FK L
Sbjct: 121 EALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQ 230
           ETMP+RAEVYAKMLG LQ+PA +LV T+QAPARE++MVL AY++KLE++
Sbjct: 181 ETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CSPI05G08950 vs. ExPASy Swiss-Prot
Match: P82139 (50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 PE=1 SV=2)

HSP 1 Score: 280.4 bits (716), Expect = 1.9e-74
Identity = 144/233 (61.80%), Postives = 181/233 (77.68%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLN----RPTNPLSFSLPRHSTNQTRHYRGLKVAAAIS 60
           ME++L  F S   P++  T   +L+     P  P + + PR      +H     + AAIS
Sbjct: 1   MESTL--FLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPR---TTHKHPTTTTITAAIS 60

Query: 61  RTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIE 120
           RTKKEETVETV++ LE+CYLLA I YKGFTVKQFQ+LR++LPE + LIVAKNTLV KA++
Sbjct: 61  RTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQ 120

Query: 121 GTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDE 180
            T W A+KPCMKGMN WLFVHSEEIP AIKPYR FQKE+KLEDNDFTGA FEGK+YGP E
Sbjct: 121 DTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGE 180

Query: 181 FKALETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQ 230
            K LETMPS+AE++AK+LG L++P S+LVGT+QAPAR+L+ +LKAY++KLE++
Sbjct: 181 VKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDE 228

[Close]

BLAST of CSPI05G08950 vs. ExPASy Swiss-Prot
Match: B0UHX8 (50S ribosomal protein L10 OS=Methylobacterium sp. (strain 4-46) OX=426117 GN=rplJ PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 8.0e-17
Identity = 60/172 (34.88%), Postives = 87/172 (50.58%), Query Frame = 0


Query: 55  ISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLK 114
           + R  K + V ++ +      L+    YKG TV   Q+LRR + +    + VAKN L   
Sbjct: 1   MDRAAKADLVASLNEVFSTTSLVVVAHYKGLTVADMQKLRRQMKQAGATVKVAKNRLANI 60

Query: 115 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDND---FTGAVFEGK 174
           A++GT+  ++KP +KG    L  +S +  AA K   DF K      ND     G      
Sbjct: 61  ALDGTNVASIKPLLKGPT--LLAYSSDPVAAAKVAVDFAK-----GNDKLVILGGAMGAT 120

Query: 175 YYGPDEFKALETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAY 223
              PD  KAL T+PS  E+ AK++GL+QAPA+ +   + APA +L  V  AY
Sbjct: 121 ALNPDGVKALATLPSLDELRAKIVGLVQAPATKIAQVVNAPAAKLARVFGAY 165

[Close]

BLAST of CSPI05G08950 vs. ExPASy Swiss-Prot
Match: B1ZGR8 (50S ribosomal protein L10 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplJ PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.0e-16
Identity = 60/174 (34.48%), Postives = 87/174 (50.00%), Query Frame = 0


Query: 55  ISRTKKEETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLI-VAKNTLVLK 114
           + RT K + V T+        ++    YKG TV   Q+LR  + +    + VAKN L   
Sbjct: 1   MDRTAKADLVSTLNGVFTTNAVVVVAHYKGLTVADMQKLRSQMKQAGATVKVAKNRLASI 60

Query: 115 AIEGTSWEALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYG 174
           A++GT   ++KP +KG    L  +S +  AA K   DF K    +     G         
Sbjct: 61  ALDGTDVASIKPLLKGPT--LLAYSSDPVAAAKVAVDFAKTN--DKLVILGGAMGTTALN 120

Query: 175 PDEFKALETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLE 228
           PD  KAL T+PS  E+ AK++GL+QAPA+ +   + APA +L  V  AY +K E
Sbjct: 121 PDGVKALATLPSLDELRAKLVGLIQAPATKVAQVVNAPAAKLARVFGAYAKKDE 170

[Close]

BLAST of CSPI05G08950 vs. ExPASy TrEMBL
Match: A0A0A0KLL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 6.3e-126
Identity = 234/235 (99.57%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKV+AAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

[Close]

BLAST of CSPI05G08950 vs. ExPASy TrEMBL
Match: A0A5A7SUB8 (50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00270 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.5e-122
Identity = 229/235 (97.45%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASLI+FTSFTPP SS  QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK
Sbjct: 1   MEASLISFTSFTPPPSS--QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CSPI05G08950 vs. ExPASy TrEMBL
Match: A0A1S3BDM0 (50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.5e-122
Identity = 229/235 (97.45%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASLI+FTSFTPP SS  QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK
Sbjct: 1   MEASLISFTSFTPPPSS--QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CSPI05G08950 vs. ExPASy TrEMBL
Match: A0A6J1JII9 (50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487249 PE=3 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.8e-113
Identity = 215/235 (91.49%), Postives = 224/235 (95.32%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKVAAAISRTKK
Sbjct: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CSPI05G08950 vs. ExPASy TrEMBL
Match: A0A6J1FTN1 (50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448014 PE=3 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 2.0e-111
Identity = 211/234 (90.17%), Postives = 221/234 (94.44%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKVA AISRTKK
Sbjct: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGT+W
Sbjct: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTTW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 235
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 232

[Close]

BLAST of CSPI05G08950 vs. NCBI nr
Match: XP_004143603.1 (50S ribosomal protein L10, chloroplastic [Cucumis sativus] >KGN50478.1 hypothetical protein Csa_000689 [Cucumis sativus])

HSP 1 Score: 459.9 bits (1182), Expect = 1.3e-125
Identity = 234/235 (99.57%), Postives = 235/235 (100.00%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKV+AAISRTKK
Sbjct: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVSAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 235

[Close]

BLAST of CSPI05G08950 vs. NCBI nr
Match: XP_008445837.1 (PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo] >KAA0034043.1 50S ribosomal protein L10 [Cucumis melo var. makuwa])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 229/235 (97.45%), Postives = 232/235 (98.72%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASLI+FTSFTPP SS  QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK
Sbjct: 1   MEASLISFTSFTPPPSS--QILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVK+FQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKEFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGK+YGPDEFKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKFYGPDEFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CSPI05G08950 vs. NCBI nr
Match: XP_038893368.1 (50S ribosomal protein L10, chloroplastic [Benincasa hispida])

HSP 1 Score: 446.4 bits (1147), Expect = 1.5e-121
Identity = 227/234 (97.01%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASL++FTSFTPPSSSS+QILTLNRPTNP SFS PRHSTNQTRHYRGL VAAAISRTKK
Sbjct: 39  MEASLLSFTSFTPPSSSSSQILTLNRPTNPFSFSPPRHSTNQTRHYRGLMVAAAISRTKK 98

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 99  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 158

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL
Sbjct: 159 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 218

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 235
           ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGG G
Sbjct: 219 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGSG 272

[Close]

BLAST of CSPI05G08950 vs. NCBI nr
Match: XP_022990377.1 (50S ribosomal protein L10, chloroplastic [Cucurbita maxima])

HSP 1 Score: 417.9 bits (1073), Expect = 5.7e-113
Identity = 215/235 (91.49%), Postives = 224/235 (95.32%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASL++F SF  PSSS  QILTLNRPTNPLSFS  RHSTNQ RHYR LKVAAAISRTKK
Sbjct: 1   MEASLLSFPSFKTPSSS--QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAAAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FKAL
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKAL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGGQ 236
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGGQ
Sbjct: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGGQ 233

[Close]

BLAST of CSPI05G08950 vs. NCBI nr
Match: KAG6600094.1 (50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 414.8 bits (1065), Expect = 4.8e-112
Identity = 213/234 (91.03%), Postives = 222/234 (94.87%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           MEASL++F SF  PSSSS QILTLNRPTNPLSFS  RHSTNQ RHYR LKVA AISRTKK
Sbjct: 1   MEASLLSFPSFKTPSSSS-QILTLNRPTNPLSFSPLRHSTNQGRHYRCLKVAGAISRTKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVETVK+QL+ CYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW
Sbjct: 61  EETVETVKEQLDKCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPD+FK L
Sbjct: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDDFKTL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQGGGGG 235
           ETMPSRAEVYAKMLGLL+ PASSLVGT+QAPAR++LMVLKAYVQKLEEQGGGGG
Sbjct: 181 ETMPSRAEVYAKMLGLLKGPASSLVGTLQAPARDVLMVLKAYVQKLEEQGGGGG 233

[Close]

BLAST of CSPI05G08950 vs. TAIR 10
Match: AT5G13510.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 281.6 bits (719), Expect = 5.9e-76
Identity = 145/229 (63.32%), Postives = 177/229 (77.29%), Query Frame = 0


Query: 1   MEASLITFTSFTPPSSSSTQILTLNRPTNPLSFSLPRHSTNQTRHYRGLKVAAAISRTKK 60
           ME +L++F+S   P     +I TL   T           +N   + R   + +A+SR KK
Sbjct: 1   MEVALLSFSSSLSPLCHQ-RISTLTPKT-----------SNSPNYPRLPVIRSAVSRNKK 60

Query: 61  EETVETVKQQLEDCYLLAGIKYKGFTVKQFQELRRSLPETSKLIVAKNTLVLKAIEGTSW 120
           EETVE VK  LE+C+LLA I YKG TVKQFQ+LRR+LP+T+KLIVAKNTLV KAIEGT W
Sbjct: 61  EETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRTLPDTTKLIVAKNTLVFKAIEGTKW 120

Query: 121 EALKPCMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKAL 180
           EALKPCMKGMN WLFV ++EIP+AIKPYR FQKE+KLE+NDF GAVFEGK+Y PD FK L
Sbjct: 121 EALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERKLENNDFAGAVFEGKFYAPDNFKVL 180

Query: 181 ETMPSRAEVYAKMLGLLQAPASSLVGTIQAPARELLMVLKAYVQKLEEQ 230
           ETMP+RAEVYAKMLG LQ+PA +LV T+QAPARE++MVL AY++KLE++
Sbjct: 181 ETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVIMVLMAYIKKLEDE 217

[Close]

BLAST of CSPI05G08950 vs. TAIR 10
Match: AT3G12370.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 184.9 bits (468), Expect = 7.6e-47
Identity = 91/146 (62.33%), Postives = 109/146 (74.66%), Query Frame = 0


Query: 68  KQQLEDCYLLAGIKYKGFTVKQFQELRRSLPE--TSKLIVAKNTLVLKAIEGTSWEALKP 127
           K  LE+C+ + GI Y G +VKQ QELR  L E   +KL+VAKNTLV KA+EGT WE+LKP
Sbjct: 15  KINLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKP 74

Query: 128 CMKGMNVWLFVHSEEIPAAIKPYRDFQKEKKLEDNDFTGAVFEGKYYGPDEFKALETMPS 187
           CMKGMN WLFV SE+IPAA+K + +FQKEKKL DN+  GAVFE K Y P ++K +ETMPS
Sbjct: 75  CMKGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPS 134

Query: 188 RAEVYAKMLGLLQAPASSLVGTIQAP 212
           RA+VY  MLG L  PA  LV  +QAP
Sbjct: 135 RADVYGMMLGSLHWPALDLVNALQAP 160

The following BLAST results are available for this feature:

BLAST of CSPI05G08950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80362	2.3e-85	72.65	50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL10 P...	[more]
Q9FY50	8.4e-75	63.32	50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P82139	1.9e-74	61.80	50S ribosomal protein L10, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL10 P...	[more]
B0UHX8	8.0e-17	34.88	50S ribosomal protein L10 OS=Methylobacterium sp. (strain 4-46) OX=426117 GN=rpl...	[more]
B1ZGR8	1.0e-16	34.48	50S ribosomal protein L10 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]

BLAST of CSPI05G08950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLL5	6.3e-126	99.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G176000 PE=3 SV=1	[more]
A0A5A7SUB8	5.5e-122	97.45	50S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A1S3BDM0	5.5e-122	97.45	50S ribosomal protein L10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488738...	[more]
A0A6J1JII9	2.8e-113	91.49	50S ribosomal protein L10, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FTN1	2.0e-111	90.17	50S ribosomal protein L10, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CSPI05G08950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143603.1	1.3e-125	99.57	50S ribosomal protein L10, chloroplastic [Cucumis sativus] >KGN50478.1 hypotheti...	[more]
XP_008445837.1	1.1e-121	97.45	PREDICTED: 50S ribosomal protein L10, chloroplastic [Cucumis melo] >KAA0034043.1...	[more]
XP_038893368.1	1.5e-121	97.01	50S ribosomal protein L10, chloroplastic [Benincasa hispida]	[more]
XP_022990377.1	5.7e-113	91.49	50S ribosomal protein L10, chloroplastic [Cucurbita maxima]	[more]
KAG6600094.1	4.8e-112	91.03	50S ribosomal protein L10, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of CSPI05G08950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13510.1	5.9e-76	63.32	Ribosomal protein L10 family protein	[more]
AT3G12370.1	7.6e-47	62.33	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.250.290		coord: 184..227 e-value: 9.7E-13 score: 49.7
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 57..152 e-value: 1.3E-20 score: 73.4
IPR001790	Ribosomal protein L10P	PANTHER	PTHR11560	39S RIBOSOMAL PROTEIN L10, MITOCHONDRIAL	coord: 28..231
IPR001790	Ribosomal protein L10P	CDD	cd05797	Ribosomal_L10	coord: 56..213 e-value: 8.75721E-49 score: 155.74
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 54..183 e-value: 2.0E-30 score: 107.6
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 57..225
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 55..215 score: 18.913208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G08950.1	CSPI05G08950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome