CSPI05G08860 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G08860
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 7529415 .. 7529627 (-)
RNA-Seq Expression	CSPI05G08860
Synteny	CSPI05G08860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGGCAAACGTTCACCAAATGTACATCCTACATGTCGGAATGATTGTCGGGAGAACCGTGCCAGAATACCCATTCCAGTCGAAGGAAAATCACAGCGTCGCAAATTTCAACCCCTCAACGCCTAATTTGTCAACGACAGAACCACGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATG

mRNA sequence

ATGGCGTCGGCAAACGTTCACCAAATGTACATCCTACATGTCGGAATGATTGTCGGGAGAACCGTGCCAGAATACCCATTCCAGTCGAAGGAAAATCACAGCGTCGCAAATTTCAACCCCTCAACGCCTAATTTGTCAACGACAGAACCACGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATG

Coding sequence (CDS)

ATGGCGTCGGCAAACGTTCACCAAATGTACATCCTACATGTCGGAATGATTGTCGGGAGAACCGTGCCAGAATACCCATTCCAGTCGAAGGAAAATCACAGCGTCGCAAATTTCAACCCCTCAACGCCTAATTTGTCAACGACAGAACCACGTTGGCGGAAACATCACTTCCAACGTCATCATGTGACGTCGGGAGTATTGTTTCCCTCGATG

Protein sequence

MASANVHQMYILHVGMIVGRTVPEYPFQSKENHSVANFNPSTPNLSTTEPRWRKHHFQRHHVTSGVLFPSM

Homology

[Close]

BLAST of CSPI05G08860 vs. ExPASy TrEMBL
Match: A0A0A0KLD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175920 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.2e-31
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MASANVHQMYILHVGMIVGRTVPEYPFQSKENHSVANFNPSTPNLSTTEPRWRKHHFQRH 60
          MAS NVHQMYILH GMIVGRT+ EYPFQSKENHSVANF+PSTP+LSTTEPRWRKHHFQRH
Sbjct: 1  MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60

Query: 61 HVTSGVLFPSM 72
          HVTSGVLFPSM
Sbjct: 61 HVTSGVLFPSM 71

[Close]

BLAST of CSPI05G08860 vs. NCBI nr
Match: KGN50470.1 (hypothetical protein Csa_000445 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 1.1e-30
Identity = 65/71 (91.55%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MASANVHQMYILHVGMIVGRTVPEYPFQSKENHSVANFNPSTPNLSTTEPRWRKHHFQRH 60
          MAS NVHQMYILH GMIVGRT+ EYPFQSKENHSVANF+PSTP+LSTTEPRWRKHHFQRH
Sbjct: 1  MASTNVHQMYILHAGMIVGRTMSEYPFQSKENHSVANFHPSTPSLSTTEPRWRKHHFQRH 60

Query: 61 HVTSGVLFPSM 72
          HVTSGVLFPSM
Sbjct: 61 HVTSGVLFPSM 71

The following BLAST results are available for this feature:

BLAST of CSPI05G08860 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G08860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLD6	5.2e-31	91.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175920 PE=4 SV=1	[more]

BLAST of CSPI05G08860 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50470.1	1.1e-30	91.55	hypothetical protein Csa_000445 [Cucumis sativus]	[more]

BLAST of CSPI05G08860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G08860.1	CSPI05G08860.1	mRNA