CSPI05G05220 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G05220
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DNA helicase
Location	Chr5: 4880773 .. 4888885 (-)
RNA-Seq Expression	CSPI05G05220
Synteny	CSPI05G05220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACTTTCTCCCGTTATTTCCTTCAACTATTCTATTTTACTTTGCAGTTTGTTTAATCGGCGAACAGCCGGAGCGCGAAAGCCGATTCACTATTTAAAAGCCGAGGCGGTTCTTCATTCCACAGTCGGCAGTGTCCTCCGTCTATGGATTCTCCTTTTCCATCACTCTCGTTCGTAAAACCCAATCGCATTTGAATCACACAACAGCCTTTGCATCTCATTTTCAAGCTATGGGACACGGTAAGACTCTGGTGGATTACAACCTTTGTGTTTTTGTTCTTAATCTTTTTGTTGGATTGTTTATATACGTCCACGATAAGATTAGTTTTCATGTAGAACATTCAATGTTCCAGGTGACAAAGGAAGACCCAACAAAAAACCTAAATTCGGCAAGGTATTGTTTGGTTTTGAACTCCATTTTATTTGATAGGTTTGGTGTTTTCTGTATTATTTAATAAATGTTGATCAATCGAACACAATTTCAGGAGGATTACAAGAAAGCTAATTTTGAAGATGATGATGTCTACCATCTTGATGATCCCGACGACGACGATCGCTATGGTGAATCTTCGTATATATGTTTCTATTTTCGTGGGATTTGAGGATGTTTGGTTTGATTAATGAATTGCTTTGCCATTTGACTCTATGGAATTTTAGGTGATAAAGAAGGAGGCAAGAGAGACTTTAGCAAATTGGAGTTAAAACCTGACCATGCTAACCGGCCTTTATGGGCTTGTGCTGATGGTCGTATATTCCTTGAAACTTTTTCGCCCTTGTACAAACAGGCGTATGATTTCCTTATTGCCATTGCGGAACCAGTTTGCAGGTAACTTAATTCTGTTGAAGCAGAAACTAATGGTGGATTCACGTGAAGATTAGTTATTCTTCATGTCAATATGTTAATGTGAATGATATTCAGGCCAGAATCAATGCACGAGTATAACCTCACTCCACATTCTTTGTATGCTGCGGTTTCTGTTGGTCTGGAGACGGAAACAATTATAGCGGTTCTGAGTAAGTTGTCGAAGGCCAAACTCCCTAAGGAGATGATTGATTTCATTTATGCTTCTACTACCAACTATGGCAAGGTGAAGCTTGTCCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGCAAGTGCTTGCTTAACTTTGGTTCCTCGTTTAGATTGAAATACATGGCCTAGTCATTATTGGAAATCTAAATGGTCACTTAATTACTGCAGGTGTTGCAGAAATTGCTCAAGGATGAGGTTATAGGCAGAGCCAGAGTCGTTCATGAGGTATGGTCCAACACAATTATTATGGATTCTTTGGGCGGTACCTACACCATGTTTTTTTTTTAATTGATATTGGAAACTATCAGGATTCTGGAAATGGTGAGTTTACAGTTAGCAAAACAGCGGGTGAACTTGGGAGTCGCCACGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCCGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCGTCACAAGTAATATTGCTTTCAAAAATCTAATACTGAATGATAACAAATGTTTGTCGTTATATTTTGGAACTCGATCAAATGTCAGGTTGAAAATGTTAAACAACGCTGCCTGCCCAATGCCTTAAATTATCCTATGCTGGAAGAGTATGACTTCAGAAATGATACTGTGAGTCTTTTTGTAGCTATATCCTTGATTCCTTGTTTTTCTTCATCGAATTGTGATCTTGGAAAGAGAATGGTTTCAAATTTTAATTATTTTCATATTTTCTGTATGATCGGATCTCTTATTCTAATTTTTACTCCTGAATTTTTTTAGATCAATCCAGACTTGGATATGGAACTGAAACCACAGGCTCAACCTAGGCCGTATCAGGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGGTATATTTGTTGCATGGTGTCTGTATTTGTTTGAACTGCCTGTGATCAAGTTTTTATAAGTAATCTAAGTTCCCTATTTATTCTGATTGTTCTTTGGTTTCAATGTGTGTTGAAAGCTTGAAAGTTGTGATTTTAGCTCAAATTTATGGGGATCACTAAACTCTCTTTTTTGTTTACTTTCTTATCAATAGTTTTTTCTTAACAAAACTTATTATCTTCCCATCATTTGTCCTGTAAATTTTTGGGCCTCAGATTCAGTTTAGGTAGCTTGGGCTTTTTTCTCCCTCTTTTGAGTTTTTCAAATGCCTTAACTAAGAATATCGGTCATTTAGTTTCAAGGTCTGATTATGAATACATGTTTGCAGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCTGGGAAGTCTCTGGTTGGAGTTTCTGCAGCCAGTCGTATCCGAAAAAGTTGTTTATGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCTACCATTCGAGATGATCAAATTTGTCGGTTCACATCAGATAGTAAAGAAAGATTCCGAGGAAATGCCGGGGTGGTTGTTACAACTTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAAATCAGAAACAGAGAATGGGGACTACTTCTCATGGACGAGGTAAGTTGACCATTTCGTGTTTACCTATTGTTTTTTTAATTAAACATTTTTAGTGTAAGTTTTCATCTATTCTGTTTATAGGTGCACGTGGTTCCTGCTCACATGTTTCGTAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGGTACTTGACATAATGGTCTTGTAACCCTCTTGGTGTGTCGTTTCTGTTGATACTGAAAATAAACTTTGATTAATTTATTGCAGCCACACTTGTGAGAGAAGACGAAAGAATTACAGATTTAAACTTTCTTATTGGTCCCAAGTTGTATGAAGCAAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAACAGGTTTTTTAATTTCGATGTAATCTATTATTTCTTGTATTTATGTGCATCATGCCTGCCCTATATTAATTATAACCATGATGAGAAGTGAGAACGTTGTCATAGTTGACAAGATAATATGGATACAACCATTATGGCATGTTCTGATTTAAGAATCTTTTTAACAAGGTATTTTGGAATTAATATGTTTGTGTACCATCAATAGATTTGTGTGCTCTTGTGGTTGTTTCCTTCTCTAAATTTCTGGCTTCCACATTTCAGGCTCTTTATGTAATGAATCCCAATAAGTTCAGGGCGTGTGAGTTCCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTTTTTGCTGACAATCTTTTTGCACTTACGGAATATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGGTTAGACAAAATTATTTTGTGTTCAAACAAACTCAACCTTACGTATGTTTGACATTCATAGAATGGATTTTCCTTTTATTTTCCGAACTTGTAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACCGTTTTTCTTTCAAAGGTACTTTTCTTCTCTCATCCTTCCCTTTTTCCTTCTCCACTCTCAAATCTCAATATATGACAATAGAAGTAGTAGTAGTAGCAATAACAAGAACAAAAAGAATGAGATATATTTGGTTTTAGATTAGGGCGATGGATGTGTTTTGTTATATTTTCTTCATTATCAACCTGATGAAGAAGTAAATATTGGTAAACAATTTATTAAAATTCATAACAGCCAGCCAGTTTTTGTTTTCAAGTAGTTGGCCAGTAATCTGCCTTTTGTGAATTTTATTGTTACTTTTTATTTACTGGATTCAGTTTAGTCCTTGGAGGTAACTGGGTTTTTGAATTGTTCCCTGATTACTAACCATATGAGTGTTTTTCCTCTTCCTTTCAAAAAATAAAGAAGGTGCACTGAAAAGTCATGGAAACACAGCCTAGACAGGGGTGAGCTATGTCTCCCAAAAGAAACTAGTGAAGGACCAACCGTCCCCAAATCAGGAGGGTTTGAGCTGGGCTATAATTACAAGAGAAAGGGTATTGTGTCTTAGACACCCAAAAGAAGAGTTAGATTCCCTCGGATTTCTTTCCTTCCAAAGTTCCCAAAAGAAATCCGGATGGTAATTCTACTCAAAACCTTAGCCTTTTCTCTCAGTTTCCACCCTTTTGCAACTGCAAGAAGCCACTCAATTACAGTATTTGGCAAAACACATAGGGAGATGAAAAGTCTTTAATAAAATACACCATTCTCTCCAGGAAGGATACCAGAAAAATAAAGGGTAATTGTAATTGATAGTTGGCATCGACGGATTGAACTGGTACATCCATCTGGGGGTTTTTCAGGACAAAATCTGGCTTTCATCAAGCAAACTTCACAAAAGCTTAAAAGTATTATCTTGATATCATACGGAGGTTTAATGAACCTAAGAAGTAAGAAAATTAAAACCTTTCTTTGGAGTCTGGTTATAAAAGTTTAACAACACAACAAAATATTCATCATTTAGTTTTGGGATAGTTGCAAATTTAGCAATTAGATTCAAAATAATTAAGTATATAGCAACATTTAAAAGAAATTGCAAATATAGCAAAATCTATCGTTGATAGAGTCGCATGGTCTATCAGTGATAGACCCAATATTTGCAACATGATCTATTAGTGATAGACTTCTATCATTGATAGAATTTGACAAATTTTGCTATATTTGCAAATTTTTTAAAATGTTGCTATATACTTAATTATTTTGAATCTAATTGCTAAATTTGCAACTATCCCAAAACTAAATGATGAATATTTTGTTGTGTTGTTAAACTTTTATAACCAGACTCCAAAGAAAGGTTTTAATTTTCTTACTTCTTAGGTTCATTAAACCTCCGTATGATATCAAGATAATACTTTTAAGCTTTTGTGAAGTTTGCTTGATGAAAGCCAGATTTTGTCCTGAAAAACCCCCAGATGGATGTACCAGTTCAATCCGTCGATGCCATCATCCTATGTCACAGTATTGATCAGCCTGACCAAACCAATTCAACTATCAAATTCTCTATCCACAAGGCCTCCTCTGAAAACAAGGTCACAATTATTAGTCTTTGGATTCTAGCTCTCTGTAACCATGGCTTCTTTCTTCAGCGAGTTAAGGTAAATGTTCGAGAAAGTTGACTAAAGAAAGGGGCCCAACCACTTGTCATTCCAGAACTGATTCTGCCACCATTTTTAGCCTTGAACTTTATGAAATGGAGGAAGAAATCACTGTTTCTTGAGATCTCGAACCATGGCCTTGCTTTTGAAATGCCCTTAGGTGGGGAGGCCTGGCACCCATAAATGCATTCTTCCTTTGTTTCAGAGAACCAATTCCCCAGCCACTATATTGAAGAGGGCAGAGCCATCCATACTGAATGAAAATTTTCGATCAATTACTTTAAAGTTACTTTTTGGCAAATTATCTCTCACGTTGTTCATAGAGTTTTTCAATCAACACGACTTTTGAAAGTTTACTCTTATCTATTAAGACTTTTAATGAATCGTTTTGGTTAGGAGATTTTTTTTTCCAGGTTGTTAATAGTTTGAGGTTGAGATCATGGTCTCAAGAGTTGAATTGCTTGCTTTTGTTTTATTACAGGTGGGTGATAACTCTATCGATATTCCCGAGGCAAATGTGATCATTCAGATTTCATCACATGCAGGTTCAAGGCGTCAAGAAGCCCAACGTCTGGGGCGTATTCTCAGGGCCAAGGTTAGAACTACATCTACAGTTCATATTTGTGCAGTTTCTCATGTTTCTGTTGAGCAGTTTGTGGGAATTAACTTGCATTTTCAATTGTTATCTTCCACAACAAGAAATTTGTGCTCTATGACGCTTGGAAGTCGTAATGGATTTATATTTCATTTTCACCTAATGTACCTTGCGAGGAATCATGCATAATTTTCACCTGAGATTGGTGAATAATTTATTGCAGATTGTTCTGTGCAAGAATACTTCTTGTATCATGCTTGGTAGTCAAGGTGGATAATTAGCATGAGGTTCTATTGTAGGTTGAATATATTCTTCTATTTATCGTTGATATAGTTTTTACTGGTCAACAGGGTAAACATCAGGACAGGATGGCTGGGGGTAAAGAGGAGTATAATGCCTTCTTCTATTCTCTTGTTTCTACGGATACACAGGTTGACCGACATCTATTCATTGTTTATCTAAATGGTGTATACGTAGTTGTTTTTCTCTTGGTCTGATGGGATACATTGCATGTTGAATTTTAATGCAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTAGTATTTTGTCTCAAGATGCGCTGCATGCTTGTTAATTTAGATTTACATGTTACAAAAGGTTCTTATCCAAATTCTCATTTGATTATAATTATTACTACTGTTATTTAAATTATAGGCTTTTGTTTGGAATTTGTGAGAAATGGAAAACAAAGTTAAATATTTTAGGACTTTTGGCATTTCCGGCAGATGCATGGGGAAAATTCTCTAACTATGGTAGTCTAGAAGTTTTTCCATACTATTTTCTTTTATTATTTGCTATAATATTAGCATTTTAGGAGAACAGTCCATGAAATTAATTAATATACCATTTAGTGGTATGCTTAAAATATGAATGGAACGTGTACATATCAGGGTGGTAGCTCTGGAATTTTCTTGTATGCGACATTCTTATAAAAGTGGAATTGTGGCAGGTAATTACAAGCTTGCCACCCGCTGATGCAGGAGCTGAGTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTTGGGAAGGTTACTATTGTCAAATATCGTTTATCTTTACTCTCTGAAAGAAAGATACTCTGACATGCTTTTTATGTCAGGTACTGAATGCAGGCGACGATATGGTAGGATTGGAGCAGTTGGAAGATGATGCAGACCAAATTGCCCTCGATGCAGCTCGCCGTTCAAAGGGATCCATGAGTGCAATGTCAGGAGCAAATGGCATGGTCTACATGGAGTACAGGTATCTTATAACATATCTCCCCCAAAAATTATGACATAAACTAAAGATAGAAATGAATTTAGCTGTAGGTATTTTTGATACATTGGCTAACCAATTGTGTGTGTTTCCTTTTCTCAGCACTGGACGGAAGCTCGCTGGTCAAGGGCAGCTTAAGAGCAAGCCCAAAGACCCAGCAAAGAGACATCATCTGTTCAAAAAGCGATTTGCGTGAAAGATCGTCATGGCCTAAAGAAATTTCGGCTAACGGCGTTTGGATTTGATCAAATTTTCAAGATGTTAATTATGAGTATAGATAGAAAAGGAAACAGACGAAAAAGCACAAGGTTCTGTCTATTGCTTCATCTCCATGGCTTGGGGGGGAAGAATGGAGGAACTGTATTACCAAAAACCTACACAAATTAGTACTAATGTAAGTATAAGTTTGCTTAATTCCCCTCCATCTGTGTTATCTGTGTTGTGTACAAAGGAGTCAAAAAGAGGTAAAAAGAAAAGACCCTTTGACATAATTTCAAACTAAACGGCAAACACAGTCCCTTTCAATCTTCTTGATTTCTCTGAGGATGTGAGAAAGGCAAAATATTCCTTGTTATCACAAGAGGTCAATTTGAAAAGAAAGAAAGCAAAAGGGAAAGAACAGAACACTATTCTTTTGCACAAGGTATAGTCTTTTTATTTATTTATTTATATTATCATCATCAATTTACCTATGTTAGAAATTTTACTAAATCTTAATAATATCTTATTTATCATAGGGTCCAAACGGTTATAAATTGTAAAGCTCAAGGAACGAGATTGTCACCTGCTTCATAAAGGGACTAAATTGATGTAAATTTGAAGGTTTATGAACTAAATTGTAATAAATTGCATGTTGAAGATTAGGGACAATTGTTGTATCAGAAGTTTTAATCACCATCATATAGCAAGTATTCTAACTCTTTGGAATTAAATATTTATGTGAGC

mRNA sequence

TAACTTTCTCCCGTTATTTCCTTCAACTATTCTATTTTACTTTGCAGTTTGTTTAATCGGCGAACAGCCGGAGCGCGAAAGCCGATTCACTATTTAAAAGCCGAGGCGGTTCTTCATTCCACAGTCGGCAGTGTCCTCCGTCTATGGATTCTCCTTTTCCATCACTCTCGTTCGTAAAACCCAATCGCATTTGAATCACACAACAGCCTTTGCATCTCATTTTCAAGCTATGGGACACGGTGACAAAGGAAGACCCAACAAAAAACCTAAATTCGGCAAGGAGGATTACAAGAAAGCTAATTTTGAAGATGATGATGTCTACCATCTTGATGATCCCGACGACGACGATCGCTATGGTGATAAAGAAGGAGGCAAGAGAGACTTTAGCAAATTGGAGTTAAAACCTGACCATGCTAACCGGCCTTTATGGGCTTGTGCTGATGGTCGTATATTCCTTGAAACTTTTTCGCCCTTGTACAAACAGGCGTATGATTTCCTTATTGCCATTGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTATAACCTCACTCCACATTCTTTGTATGCTGCGGTTTCTGTTGGTCTGGAGACGGAAACAATTATAGCGGTTCTGAGTAAGTTGTCGAAGGCCAAACTCCCTAAGGAGATGATTGATTTCATTTATGCTTCTACTACCAACTATGGCAAGGTGAAGCTTGTCCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGTGTTGCAGAAATTGCTCAAGGATGAGGTTATAGGCAGAGCCAGAGTCGTTCATGAGGATTCTGGAAATGGTGAGTTTACAGTTAGCAAAACAGCGGGTGAACTTGGGAGTCGCCACGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCCGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCGTCACAAGTTGAAAATGTTAAACAACGCTGCCTGCCCAATGCCTTAAATTATCCTATGCTGGAAGAGTATGACTTCAGAAATGATACTATCAATCCAGACTTGGATATGGAACTGAAACCACAGGCTCAACCTAGGCCGTATCAGGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCTGGGAAGTCTCTGGTTGGAGTTTCTGCAGCCAGTCGTATCCGAAAAAGTTGTTTATGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCTACCATTCGAGATGATCAAATTTGTCGGTTCACATCAGATAGTAAAGAAAGATTCCGAGGAAATGCCGGGGTGGTTGTTACAACTTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAAATCAGAAACAGAGAATGGGGACTACTTCTCATGGACGAGGTGCACGTGGTTCCTGCTCACATGTTTCGTAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAAGACGAAAGAATTACAGATTTAAACTTTCTTATTGGTCCCAAGTTGTATGAAGCAAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAACAGGCTCTTTATGTAATGAATCCCAATAAGTTCAGGGCGTGTGAGTTCCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTTTTTGCTGACAATCTTTTTGCACTTACGGAATATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACCGTTTTTCTTTCAAAGGTGGGTGATAACTCTATCGATATTCCCGAGGCAAATGTGATCATTCAGATTTCATCACATGCAGGTTCAAGGCGTCAAGAAGCCCAACGTCTGGGGCGTATTCTCAGGGCCAAGGGTAAACATCAGGACAGGATGGCTGGGGGTAAAGAGGAGTATAATGCCTTCTTCTATTCTCTTGTTTCTACGGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCCGCTGATGCAGGAGCTGAGTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTTGGGAAGGTACTGAATGCAGGCGACGATATGGTAGGATTGGAGCAGTTGGAAGATGATGCAGACCAAATTGCCCTCGATGCAGCTCGCCGTTCAAAGGGATCCATGAGTGCAATGTCAGGAGCAAATGGCATGGTCTACATGGAGTACAGCACTGGACGGAAGCTCGCTGGTCAAGGGCAGCTTAAGAGCAAGCCCAAAGACCCAGCAAAGAGACATCATCTGTTCAAAAAGCGATTTGCGTGAAAGATCGTCATGGCCTAAAGAAATTTCGGCTAACGGCGTTTGGATTTGATCAAATTTTCAAGATGTTAATTATGAGTATAGATAGAAAAGGAAACAGACGAAAAAGCACAAGGTTCTGTCTATTGCTTCATCTCCATGGCTTGGGGGGGAAGAATGGAGGAACTGTATTACCAAAAACCTACACAAATTAGTACTAATGTAAGTATAAGTTTGCTTAATTCCCCTCCATCTGTGTTATCTGTGTTGTGTACAAAGGAGTCAAAAAGAGGTAAAAAGAAAAGACCCTTTGACATAATTTCAAACTAAACGGCAAACACAGTCCCTTTCAATCTTCTTGATTTCTCTGAGGATGTGAGAAAGGCAAAATATTCCTTGTTATCACAAGAGGTCAATTTGAAAAGAAAGAAAGCAAAAGGGAAAGAACAGAACACTATTCTTTTGCACAAGGGTCCAAACGGTTATAAATTGTAAAGCTCAAGGAACGAGATTGTCACCTGCTTCATAAAGGGACTAAATTGATGTAAATTTGAAGGTTTATGAACTAAATTGTAATAAATTGCATGTTGAAGATTAGGGACAATTGTTGTATCAGAAGTTTTAATCACCATCATATAGCAAGTATTCTAACTCTTTGGAATTAAATATTTATGTGAGC

Coding sequence (CDS)

ATGGGACACGGTGACAAAGGAAGACCCAACAAAAAACCTAAATTCGGCAAGGAGGATTACAAGAAAGCTAATTTTGAAGATGATGATGTCTACCATCTTGATGATCCCGACGACGACGATCGCTATGGTGATAAAGAAGGAGGCAAGAGAGACTTTAGCAAATTGGAGTTAAAACCTGACCATGCTAACCGGCCTTTATGGGCTTGTGCTGATGGTCGTATATTCCTTGAAACTTTTTCGCCCTTGTACAAACAGGCGTATGATTTCCTTATTGCCATTGCGGAACCAGTTTGCAGGCCAGAATCAATGCACGAGTATAACCTCACTCCACATTCTTTGTATGCTGCGGTTTCTGTTGGTCTGGAGACGGAAACAATTATAGCGGTTCTGAGTAAGTTGTCGAAGGCCAAACTCCCTAAGGAGATGATTGATTTCATTTATGCTTCTACTACCAACTATGGCAAGGTGAAGCTTGTCCTTAAAAAGAACCGATATCTTGTGGAATCCCCATTTCCAGAGGTGTTGCAGAAATTGCTCAAGGATGAGGTTATAGGCAGAGCCAGAGTCGTTCATGAGGATTCTGGAAATGGTGAGTTTACAGTTAGCAAAACAGCGGGTGAACTTGGGAGTCGCCACGAAGGATTGCTTAATGAAGCAGAAGCTGCAGCTGCAGCCGAGGAAAGAGAAACTCATTCATTTGAAATTGACCCGTCACAAGTTGAAAATGTTAAACAACGCTGCCTGCCCAATGCCTTAAATTATCCTATGCTGGAAGAGTATGACTTCAGAAATGATACTATCAATCCAGACTTGGATATGGAACTGAAACCACAGGCTCAACCTAGGCCGTATCAGGAAAAGAGTCTTAGTAAAATGTTTGGAAATGGTAGAGCAAGATCTGGCATTATTGTACTTCCTTGTGGAGCTGGGAAGTCTCTGGTTGGAGTTTCTGCAGCCAGTCGTATCCGAAAAAGTTGTTTATGTTTAGCTACAAATGCTGTATCAGTGGATCAGTGGGCTTTTCAGTTTAAGTTGTGGTCTACCATTCGAGATGATCAAATTTGTCGGTTCACATCAGATAGTAAAGAAAGATTCCGAGGAAATGCCGGGGTGGTTGTTACAACTTATAACATGGTTGCTTTTGGTGGTAAAAGATCTGAAGAATCTGAAAAGATTATTGAAGAAATCAGAAACAGAGAATGGGGACTACTTCTCATGGACGAGGTGCACGTGGTTCCTGCTCACATGTTTCGTAAGGTTATCAGCCTGACTAAGTCTCACTGCAAGCTTGGGCTCACTGCCACACTTGTGAGAGAAGACGAAAGAATTACAGATTTAAACTTTCTTATTGGTCCCAAGTTGTATGAAGCAAACTGGTTGGATCTTGTGAAAGGAGGATTTATTGCAAATGTGCAGTGTGCTGAAGTTTGGTGTCCTATGACAAAGGAGTTTTTTGCTGAATATCTGAAGAAAGAAAACTCAAAGAAAAAACAGGCTCTTTATGTAATGAATCCCAATAAGTTCAGGGCGTGTGAGTTCCTCATACGGTTTCATGAACAGCAGCGTGGTGATAAGATAATTGTTTTTGCTGACAATCTTTTTGCACTTACGGAATATGCAATGAAGCTTCGTAAACCTATGATCTATGGTGCAACAAGTCATATTGAGAGGACAAAAATTCTTGAAGCATTCAAAACTAGTCGTGATGTGAATACCGTTTTTCTTTCAAAGGTGGGTGATAACTCTATCGATATTCCCGAGGCAAATGTGATCATTCAGATTTCATCACATGCAGGTTCAAGGCGTCAAGAAGCCCAACGTCTGGGGCGTATTCTCAGGGCCAAGGGTAAACATCAGGACAGGATGGCTGGGGGTAAAGAGGAGTATAATGCCTTCTTCTATTCTCTTGTTTCTACGGATACACAGGAAATGTACTATTCAACTAAACGACAACAGTTTTTGATCGATCAAGGTTATAGCTTTAAGGTAATTACAAGCTTGCCACCCGCTGATGCAGGAGCTGAGTTGAGCTATCATCGTCTTGATGATCAGTTGGCACTTCTTGGGAAGGTACTGAATGCAGGCGACGATATGGTAGGATTGGAGCAGTTGGAAGATGATGCAGACCAAATTGCCCTCGATGCAGCTCGCCGTTCAAAGGGATCCATGAGTGCAATGTCAGGAGCAAATGGCATGGTCTACATGGAGTACAGCACTGGACGGAAGCTCGCTGGTCAAGGGCAGCTTAAGAGCAAGCCCAAAGACCCAGCAAAGAGACATCATCTGTTCAAAAAGCGATTTGCGTGA

Protein sequence

MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLKDEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSKGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA*

Homology

[Close]

BLAST of CSPI05G05220 vs. ExPASy Swiss-Prot
Match: Q38861 (General transcription and DNA repair factor IIH helicase subunit XPB1 OS=Arabidopsis thaliana OX=3702 GN=XPB1 PE=2 SV=3)

HSP 1 Score: 1305.4 bits (3377), Expect = 0.0e+00
Identity = 665/769 (86.48%), Postives = 712/769 (92.59%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKF-GKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKP 60
           MG+G++GRPNKK K+ GK+D K  N ++ + Y+ DD D+D R G+ E  KRDF+KLELKP
Sbjct: 1   MGNGERGRPNKKMKYGGKDDQKMKNIQNAEDYY-DDADEDSRDGEGEEKKRDFTKLELKP 60

Query: 61  DHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 120
           DH NRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
Sbjct: 61  DHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 120

Query: 121 GLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLL 180
           GLETETII+VL+KLSK KLPKEMI+FI+AST NYGKVKLVLKKNRY +ESPFPEVL++LL
Sbjct: 121 GLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYFIESPFPEVLKRLL 180

Query: 181 KDEVIGRARVVHEDSGNGE-FTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPS 240
            D+VI RAR   E    G+ F+V +T GEL +    LLNEAE AAAAEE+ETHSFEIDP+
Sbjct: 181 SDDVINRARFSSEPYYGGDGFSVGRTCGELEAGPGELLNEAEFAAAAEEKETHSFEIDPA 240

Query: 241 QVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRA 300
           QVENVKQRCLPNALNYPMLEEYDFRND +NPDLDMELKP AQPRPYQEKSLSKMFGNGRA
Sbjct: 241 QVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRA 300

Query: 301 RSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT 360
           RSGIIVLPCGAGKSLVGVSAA+RI+KSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT
Sbjct: 301 RSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT 360

Query: 361 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 420
           SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE+RNREWGLLLMDEVHVVPAHMFR
Sbjct: 361 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFR 420

Query: 421 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 480
           KVIS+TKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC
Sbjct: 421 KVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 480

Query: 481 PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 540
           PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE
Sbjct: 481 PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 540

Query: 541 YAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHA 600
           YAMKLRKPMIYGATSHIERTKILEAFKTS+DVNTVFLSKVGDNSIDIPEANVIIQISSHA
Sbjct: 541 YAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHA 600

Query: 601 GSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG 660
           GSRRQEAQRLGRILRAKGK +DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG
Sbjct: 601 GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG 660

Query: 661 YSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARR 720
           YSFKVITSLPP DAG+ LSYH  ++QL+LLGKV+NAGDD+VGLEQLE+D D +AL  ARR
Sbjct: 661 YSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARR 720

Query: 721 SKGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768
           S GSMS MSG+ GMVYMEY++GR  +GQ Q K KPKDP KRH+LFKKR+
Sbjct: 721 SMGSMSVMSGSKGMVYMEYNSGRHKSGQ-QFK-KPKDPTKRHNLFKKRY 766

[Close]

BLAST of CSPI05G05220 vs. ExPASy Swiss-Prot
Match: Q9FUG4 (General transcription and DNA repair factor IIH helicase subunit XPB2 OS=Arabidopsis thaliana OX=3702 GN=XPB2 PE=2 SV=1)

HSP 1 Score: 1276.5 bits (3302), Expect = 0.0e+00
Identity = 650/769 (84.53%), Postives = 702/769 (91.29%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKF-GKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKP 60
           MG+ ++ RP KK K+ GK+D K  N ++ + Y+ DD D+D R G+ E  +RDF+ LELKP
Sbjct: 1   MGNDERKRPTKKMKYGGKDDQKMKNIQNVEDYY-DDADEDSRDGEGEEKRRDFTDLELKP 60

Query: 61  DHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 120
           DH NRPLWACADG+IFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
Sbjct: 61  DHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 120

Query: 121 GLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLL 180
           GLETETII+VL+KLSK KLP E+IDFI+AST NYGKVKLVLKKNRY +ESPFPEVL++LL
Sbjct: 121 GLETETIISVLNKLSKTKLPGEIIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKRLL 180

Query: 181 KDEVIGRARVVHEDSGNGE-FTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPS 240
            D+VI RAR   E    G+ FT+ KT+GEL +    LLNEAE AAAAEE+ETHSFEIDP+
Sbjct: 181 SDDVINRARFTSEPYYGGDGFTIGKTSGELEAGPGELLNEAELAAAAEEKETHSFEIDPA 240

Query: 241 QVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRA 300
            VENVKQRCLPNALNYPMLEEYDFRND +NPDLDMELKP AQPRPYQEKSLSKMFGNGRA
Sbjct: 241 LVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRA 300

Query: 301 RSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT 360
           RSGIIVLPCGAGKSLVGVSAA+RI+KSCLCLATNAVSVDQWA+QFKLWSTI+DDQICRFT
Sbjct: 301 RSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFT 360

Query: 361 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 420
           SDSKERFRGNAGVVVTTYNM+AFGGKRSEE+EKIIEE+RNREWGLLLMDEVHVVPAHMFR
Sbjct: 361 SDSKERFRGNAGVVVTTYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFR 420

Query: 421 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 480
           KVIS+TKSHCKLGLTATLVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC
Sbjct: 421 KVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 480

Query: 481 PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 540
           PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE
Sbjct: 481 PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 540

Query: 541 YAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHA 600
           YAMKLRKPMIYGATSHIERTKILEAFKTS+ VNTVFLSKVGDNSIDIPEANVIIQISSHA
Sbjct: 541 YAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHA 600

Query: 601 GSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG 660
           GSRRQEAQRLGRILRAKGK +DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG
Sbjct: 601 GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG 660

Query: 661 YSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARR 720
           YSFKVITSLPP DAG+ L YH  ++QL+LLGKVLNAGDDMVGLEQLE+D D  AL   RR
Sbjct: 661 YSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVGLEQLEEDTDGKAL-KTRR 720

Query: 721 SKGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768
           S GSMSAMSGANG VYMEY++GR+ +  G    KPKDP KRH++FKKR+
Sbjct: 721 SMGSMSAMSGANGRVYMEYNSGRQKS--GNQSKKPKDPTKRHNIFKKRY 765

[Close]

BLAST of CSPI05G05220 vs. ExPASy Swiss-Prot
Match: O00835 (General transcription and DNA repair factor IIH helicase subunit XPB OS=Dictyostelium discoideum OX=44689 GN=repB PE=2 SV=1)

HSP 1 Score: 822.4 bits (2123), Expect = 4.3e-237
Identity = 454/758 (59.89%), Postives = 539/758 (71.11%), Query Frame = 0


Query: 44  DKEGGKRDFSK-LELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPES 103
           +++G   D+SK   LK D+ +RP+W C DG IFLETFS +YKQA DFL+AIAEPVCRP++
Sbjct: 58  EEKGSLLDYSKRCILKQDNKSRPIWVCPDGHIFLETFSAIYKQASDFLVAIAEPVCRPQN 117

Query: 104 MHEYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKK 163
           +HEY LTP+SLYAAVSVGLET  II VL +LSK  LPKE+  F+   T +YGKVKLVL+K
Sbjct: 118 IHEYQLTPYSLYAAVSVGLETNDIITVLGRLSKLALPKEVEQFVRQCTQSYGKVKLVLQK 177

Query: 164 NRYLVESPFPEVLQKLLKDEVIGRAR--------VVHEDSG---NGE-FTVSKTAGELGS 223
           N+Y VES +PEVL+ LLKD  I  AR        VV   +G   N E  T ++ +G L +
Sbjct: 178 NKYFVESAYPEVLEFLLKDSSIATARIKPTLEESVVDPKTGFIINKEVVTGAQISGGLQA 237

Query: 224 RHE---GLLNEAEAAAAAEERET---------HSFEIDPSQVENVKQRCLPNALNYPMLE 283
                  L N+A +    EE E          HSFEIDP QVE VK+RC+   L+YP+LE
Sbjct: 238 NQSLDPVLKNDALSNLLEEEEEDTVNNSDQHFHSFEIDPQQVEEVKKRCI--QLDYPVLE 297

Query: 284 EYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 343
           EYDFRNDT+NP+L+++LKP    RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G++A
Sbjct: 298 EYDFRNDTVNPNLNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSGITA 357

Query: 344 ASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNM 403
           A  ++KS L L T+AVSV+QW +QFKLWS I + QI +FTSD+KE+    AGV +TTY M
Sbjct: 358 ACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNVAGVTITTYTM 417

Query: 404 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 463
           VAFGG+RS ES KI+ EI NREWGL+L+DEVHVVPA MFRKV+++TK+HCKLGLTATL+R
Sbjct: 418 VAFGGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTATLLR 477

Query: 464 EDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQ 523
           EDE+I DLNFLIGPKLYEANWLDL K GF+ANV C+EVWCPMT EF+ EYL  ++  KK+
Sbjct: 478 EDEKIQDLNFLIGPKLYEANWLDLQKAGFLANVSCSEVWCPMTAEFYKEYLINDSQGKKK 537

Query: 524 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERT 583
            LY MNPNKFRACE+LIRFHE QRGDKIIVF+DN++AL +YA  L +  IYG TS  ER 
Sbjct: 538 LLYTMNPNKFRACEYLIRFHE-QRGDKIIVFSDNVYALQKYAKGLGRYFIYGPTSGHERM 597

Query: 584 KILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKH 643
            IL  F+    V T+F+SKVGD SIDIPEA VIIQ+SSH GSRRQEAQRLGRILR K K 
Sbjct: 598 SILSKFQHDPTVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPKPKS 657

Query: 644 QDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGAELSY 703
                     YNAFFYSLVS DTQEMYYSTKRQQFLIDQGYSFKVI+ LP  D    L Y
Sbjct: 658 DGL-------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGIDQEVNLKY 717

Query: 704 HRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDA----------ARRSKGSMSAMSG 763
               DQL LL +VL  G+D    E LE+D D I   A          +R + GS  A+SG
Sbjct: 718 SSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDITRGAKKSKSSAPTVSRTTGGSTRALSG 777

Query: 764 ANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKR 767
            N M YMEY          Q  +  K    +H LFK+R
Sbjct: 778 GNDMNYMEY----------QAPAIYKSIPTQHALFKQR 795

[Close]

BLAST of CSPI05G05220 vs. ExPASy Swiss-Prot
Match: P49135 (General transcription and DNA repair factor IIH helicase subunit XPB OS=Mus musculus OX=10090 GN=Ercc3 PE=2 SV=1)

HSP 1 Score: 755.0 bits (1948), Expect = 8.4e-217
Identity = 425/805 (52.80%), Postives = 545/805 (67.70%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDP-----------DDDDRYGDKEGGK 60
           MG  D+   +KK K  K  Y++   ++DD+   +             D+     D+ G K
Sbjct: 1   MGKRDRVDRDKK-KSKKRQYEEEEEDEDDIPGNESQEAVPSAAGKQVDESSTKVDEYGAK 60

Query: 61  RDFSKLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLT 120
               ++ LK DH +RPLW   DG IFLE FSP+YK A DFL+AIAEPVCRP  +HEY LT
Sbjct: 61  DYRQQMPLKGDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVHEYKLT 120

Query: 121 PHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVES 180
            +SLYAAVSVGL+T  I   L KLSK  +P  +I FI   T +YGKVKLVLK NRY VES
Sbjct: 121 AYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVES 180

Query: 181 PFPEVLQKLLKDEVI---------GRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAE 240
             P+V+Q LL+D VI         G A  +  ++   +  +SKTA E GS         +
Sbjct: 181 SHPDVIQHLLQDPVIRECRLRNAEGEATELITETFTSKSAISKTAAE-GSGGPSTSQGVD 240

Query: 241 AAAAA--------------------EERETHSFEIDPSQVENVKQRCLPNALNYPMLEEY 300
           A A +                    EE +T SFE+    +E +++RC+   L YP+L EY
Sbjct: 241 AQATSDIPKDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCI--CLEYPLLAEY 300

Query: 301 DFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAS 360
           DFRNDT+NPD++++LKP A  RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVGV+AA 
Sbjct: 301 DFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAAC 360

Query: 361 RIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYNMVA 420
            +RK CL L  +AVSV+QW  QFK+WSTI D QICRFTSD+K++  G   V ++TY+M+ 
Sbjct: 361 TVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAISTYSMLG 420

Query: 421 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 480
              KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTATLVRED
Sbjct: 421 HTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTATLVRED 480

Query: 481 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKKQAL 540
           ++I DLNFLIGPKLYEANW++L   G+IA VQCAEVWCPM+ EF+ EY+  + +KK+  L
Sbjct: 481 DKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TKKRILL 540

Query: 541 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIERTKI 600
           Y MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS  ER +I
Sbjct: 541 YTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQI 600

Query: 601 LEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKHQD 660
           L+ FK +  +NT+F+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK   + 
Sbjct: 601 LQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK---KG 660

Query: 661 RMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGAELSYHR 720
            +A   EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +   EL++  
Sbjct: 661 MVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EELAFST 720

Query: 721 LDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSKGSMSAMSGANGMVYMEYSTG 766
            ++Q  LL KVL A D     E +  +    +  A+RR  G+MS++SGA+  VYMEY + 
Sbjct: 721 KEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSGQASRRC-GTMSSLSGADDTVYMEYHSS 780

[Close]

BLAST of CSPI05G05220 vs. ExPASy Swiss-Prot
Match: P19447 (General transcription and DNA repair factor IIH helicase subunit XPB OS=Homo sapiens OX=9606 GN=ERCC3 PE=1 SV=1)

HSP 1 Score: 754.2 bits (1946), Expect = 1.4e-216
Identity = 424/810 (52.35%), Postives = 548/810 (67.65%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDD-------------DRYGDK-- 60
           MG  D+   +KK        +K ++ED++    D P +D             D  G K  
Sbjct: 1   MGKRDRADRDKKKS------RKRHYEDEEDDEEDAPGNDPQEAVPSAAGKQVDESGTKVD 60

Query: 61  EGGKRDFS-KLELKPDHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMH 120
           E G +D+  ++ LK DH +RPLW   DG IFLE FSP+YK A DFL+AIAEPVCRP  +H
Sbjct: 61  EYGAKDYRLQMPLKDDHTSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPTHVH 120

Query: 121 EYNLTPHSLYAAVSVGLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNR 180
           EY LT +SLYAAVSVGL+T  I   L KLSK  +P  ++ FI   T +YGKVKLVLK NR
Sbjct: 121 EYKLTAYSLYAAVSVGLQTSDITEYLRKLSKTGVPDGIMQFIKLCTVSYGKVKLVLKHNR 180

Query: 181 YLVESPFPEVLQKLLKDEVI---------GRARVVHEDSGNGEFTVSKTAGELGSRHEGL 240
           Y VES  P+V+Q LL+D VI         G A  +  ++   +  +SKTA   G      
Sbjct: 181 YFVESCHPDVIQHLLQDPVIRECRLRNSEGEATELITETFTSKSAISKTAESSGGPSTSR 240

Query: 241 LNEAEAAA------------------AAEERETHSFEIDPSQVENVKQRCLPNALNYPML 300
           + + +  +                    EE +T SFE+    +E +++RC+   L YP+L
Sbjct: 241 VTDPQGKSDIPMDLFDFYEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCI--HLEYPLL 300

Query: 301 EEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 360
            EYDFRND++NPD++++LKP A  RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVGV+
Sbjct: 301 AEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVT 360

Query: 361 AASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTTYN 420
           AA  +RK CL L  +AVSV+QW  QFK+WSTI D QICRFTSD+K++  G   V ++TY+
Sbjct: 361 AACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAISTYS 420

Query: 421 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 480
           M+    KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTATLV
Sbjct: 421 MLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLV 480

Query: 481 REDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKK 540
           RED++I DLNFLIGPKLYEANW++L   G+IA VQCAEVWCPM+ EF+ EY+  + +KK+
Sbjct: 481 REDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TKKR 540

Query: 541 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHIER 600
             LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS  ER
Sbjct: 541 ILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGER 600

Query: 601 TKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK 660
            +IL+ FK +  +NT+F+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK  
Sbjct: 601 MQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK-- 660

Query: 661 HQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGAELS 720
            +  +A   EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L   +   +L+
Sbjct: 661 -KGMVA---EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLA 720

Query: 721 YHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSKGSMSAMSGANGMVYMEY 768
           +   ++Q  LL KVL A D     E +  +    +  A+RR  G+MS+MSGA+  VYMEY
Sbjct: 721 FSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQASRRF-GTMSSMSGADDTVYMEY 780

[Close]

BLAST of CSPI05G05220 vs. ExPASy TrEMBL
Match: A0A0A0KKI0 (DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_5G152930 PE=3 SV=1)

HSP 1 Score: 1524.2 bits (3945), Expect = 0.0e+00
Identity = 768/768 (100.00%), Postives = 768/768 (100.00%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD
Sbjct: 54  MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 113

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 114 HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 173

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
Sbjct: 174 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 233

Query: 181 DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240
           DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
Sbjct: 234 DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 293

Query: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300
           ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
Sbjct: 294 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 353

Query: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360
           GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
Sbjct: 354 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 413

Query: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420
           SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
Sbjct: 414 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 473

Query: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480
           ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
Sbjct: 474 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 533

Query: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540
           TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
Sbjct: 534 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 593

Query: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600
           MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
Sbjct: 594 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 653

Query: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660
           RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
Sbjct: 654 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 713

Query: 661 FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK 720
           FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK
Sbjct: 714 FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK 773

Query: 721 GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 769
           GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA
Sbjct: 774 GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 821

[Close]

BLAST of CSPI05G05220 vs. ExPASy TrEMBL
Match: A0A1S3ATU9 (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103482768 PE=3 SV=1)

HSP 1 Score: 1500.3 bits (3883), Expect = 0.0e+00
Identity = 756/767 (98.57%), Postives = 761/767 (99.22%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGD+GRP+KKPKFGKEDYKKANFEDDDVYHLDDPDDDDR GDKE GKRDFSKLELKPD
Sbjct: 1   MGHGDRGRPSKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRNGDKEVGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
Sbjct: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180

Query: 181 DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240
           DEVI RAR++ EDSGNGEFT+SKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
Sbjct: 181 DEVISRARIIPEDSGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240

Query: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300
           ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
Sbjct: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300

Query: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360
           GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
Sbjct: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360

Query: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420
           SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
Sbjct: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420

Query: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480
           ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
Sbjct: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480

Query: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540
           TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
Sbjct: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540

Query: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600
           MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
Sbjct: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600

Query: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660
           RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
Sbjct: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660

Query: 661 FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK 720
           FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALD ARRS 
Sbjct: 661 FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRSV 720

Query: 721 GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768
           GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF
Sbjct: 721 GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 767

[Close]

BLAST of CSPI05G05220 vs. ExPASy TrEMBL
Match: A0A5A7THB1 (DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002390 PE=3 SV=1)

HSP 1 Score: 1495.7 bits (3871), Expect = 0.0e+00
Identity = 756/768 (98.44%), Postives = 761/768 (99.09%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGD+GRP+KKPKFGKEDYKKANFEDDDVYHLDDPDDDDR GDKE GKRDFSKLELKPD
Sbjct: 1   MGHGDRGRPSKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRNGDKEVGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
Sbjct: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180

Query: 181 DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240
           DEVI RAR++ EDSGNGEFT+SKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
Sbjct: 181 DEVISRARIIPEDSGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240

Query: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300
           ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
Sbjct: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300

Query: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360
           GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
Sbjct: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360

Query: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420
           SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
Sbjct: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420

Query: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480
           ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
Sbjct: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480

Query: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540
           TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
Sbjct: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540

Query: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600
           MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
Sbjct: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600

Query: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660
           RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
Sbjct: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660

Query: 661 FK-VITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRS 720
           FK VITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALD ARRS
Sbjct: 661 FKVVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRS 720

Query: 721 KGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768
            GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF
Sbjct: 721 VGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768

[Close]

BLAST of CSPI05G05220 vs. ExPASy TrEMBL
Match: A0A6J1I1I0 (DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111469016 PE=3 SV=1)

HSP 1 Score: 1469.9 bits (3804), Expect = 0.0e+00
Identity = 738/769 (95.97%), Postives = 757/769 (98.44%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGDKGR +K+PKFGKEDYKKA+FE++D YH ++ DDDDR GDKEGGKRDFSKLELKPD
Sbjct: 1   MGHGDKGRSSKRPKFGKEDYKKAHFEEEDAYHFEEFDDDDRNGDKEGGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           H NRPLWAC+DGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HTNRPLWACSDGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LET+TIIAVLSKLSKAKLPKEMIDFIYAST+NYGKVKLVLKKNRYLVESPFPEVLQKLL+
Sbjct: 121 LETDTIIAVLSKLSKAKLPKEMIDFIYASTSNYGKVKLVLKKNRYLVESPFPEVLQKLLR 180

Query: 181 DEVIGRARVVHEDS-GNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQ 240
           DEVIGRAR++HEDS GNGEFT+SKTAGELG+RHEGLLNEAEAAAAAEERETHSFEIDP+Q
Sbjct: 181 DEVIGRARIIHEDSHGNGEFTISKTAGELGNRHEGLLNEAEAAAAAEERETHSFEIDPAQ 240

Query: 241 VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR 300
           VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR
Sbjct: 241 VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR 300

Query: 301 SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS 360
           SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS
Sbjct: 301 SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS 360

Query: 361 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420
           DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
Sbjct: 361 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420

Query: 421 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480
           VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
Sbjct: 421 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480

Query: 481 MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 540
           MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY
Sbjct: 481 MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 540

Query: 541 AMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600
           AMKLRKPMIYGATSH+ERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG
Sbjct: 541 AMKLRKPMIYGATSHLERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600

Query: 601 SRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY 660
           SRRQEAQRLGRILRAKGK QDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
Sbjct: 601 SRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY 660

Query: 661 SFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRS 720
           SFKVITSLPPADAGA+LSYHRLDDQLALLGKVLNAGDDMVGLEQLEDD DQIALD ARR 
Sbjct: 661 SFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDTDQIALDKARRM 720

Query: 721 KGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 769
            GSMSAMSGANGMVYMEYSTGRKLAGQGQ+KSKPKDPAKRHHLFKKRFA
Sbjct: 721 TGSMSAMSGANGMVYMEYSTGRKLAGQGQMKSKPKDPAKRHHLFKKRFA 769

[Close]

BLAST of CSPI05G05220 vs. ExPASy TrEMBL
Match: A0A6J1ELT7 (DNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111435717 PE=3 SV=1)

HSP 1 Score: 1469.9 bits (3804), Expect = 0.0e+00
Identity = 738/769 (95.97%), Postives = 757/769 (98.44%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGDKGR +K+PKFGKEDYKKA+FE++D YH ++ DDDDR GDKEGGKRDFSKLELKPD
Sbjct: 1   MGHGDKGRSSKRPKFGKEDYKKAHFEEEDAYHFEEFDDDDRNGDKEGGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           H NRPLWAC+DGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HTNRPLWACSDGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LET+TIIAVLSKLSKAKLPKEMIDFIYAST+NYGKVKLVLKKNRYLVESPFPEVLQKLL+
Sbjct: 121 LETDTIIAVLSKLSKAKLPKEMIDFIYASTSNYGKVKLVLKKNRYLVESPFPEVLQKLLR 180

Query: 181 DEVIGRARVVHEDS-GNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQ 240
           DEVIGRAR++HEDS GNGEFT+SKTAGELG+RHEGLLNEAEAAAAAEERETHSFEIDP+Q
Sbjct: 181 DEVIGRARIIHEDSHGNGEFTISKTAGELGNRHEGLLNEAEAAAAAEERETHSFEIDPAQ 240

Query: 241 VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR 300
           VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR
Sbjct: 241 VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR 300

Query: 301 SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS 360
           SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS
Sbjct: 301 SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS 360

Query: 361 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420
           DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
Sbjct: 361 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420

Query: 421 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480
           VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
Sbjct: 421 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480

Query: 481 MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 540
           MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY
Sbjct: 481 MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 540

Query: 541 AMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600
           AMKLRKPMIYGATSH+ERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG
Sbjct: 541 AMKLRKPMIYGATSHLERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600

Query: 601 SRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY 660
           SRRQEAQRLGRILRAKGK QDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
Sbjct: 601 SRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY 660

Query: 661 SFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRS 720
           SFKVITSLPPADAGA+LSYHRLDDQLALLGKVLNAGDDMVGLEQLEDD DQIALD ARR 
Sbjct: 661 SFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDTDQIALDKARRM 720

Query: 721 KGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 769
            GSMSAMSGANGMVYMEYSTGRKLAGQGQ+KSKPKDPAKRHHLFKKRFA
Sbjct: 721 TGSMSAMSGANGMVYMEYSTGRKLAGQGQMKSKPKDPAKRHHLFKKRFA 769

[Close]

BLAST of CSPI05G05220 vs. NCBI nr
Match: XP_011654733.1 (general transcription and DNA repair factor IIH helicase subunit XPB1 [Cucumis sativus] >KAE8647852.1 hypothetical protein Csa_000259 [Cucumis sativus])

HSP 1 Score: 1524.2 bits (3945), Expect = 0.0e+00
Identity = 768/768 (100.00%), Postives = 768/768 (100.00%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD
Sbjct: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
Sbjct: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180

Query: 181 DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240
           DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
Sbjct: 181 DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240

Query: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300
           ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
Sbjct: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300

Query: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360
           GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
Sbjct: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360

Query: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420
           SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
Sbjct: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420

Query: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480
           ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
Sbjct: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480

Query: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540
           TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
Sbjct: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540

Query: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600
           MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
Sbjct: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600

Query: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660
           RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
Sbjct: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660

Query: 661 FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK 720
           FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK
Sbjct: 661 FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK 720

Query: 721 GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 769
           GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA
Sbjct: 721 GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 768

[Close]

BLAST of CSPI05G05220 vs. NCBI nr
Match: XP_008437310.1 (PREDICTED: DNA repair helicase XPB1 [Cucumis melo])

HSP 1 Score: 1500.3 bits (3883), Expect = 0.0e+00
Identity = 756/767 (98.57%), Postives = 761/767 (99.22%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGD+GRP+KKPKFGKEDYKKANFEDDDVYHLDDPDDDDR GDKE GKRDFSKLELKPD
Sbjct: 1   MGHGDRGRPSKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRNGDKEVGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
Sbjct: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180

Query: 181 DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240
           DEVI RAR++ EDSGNGEFT+SKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
Sbjct: 181 DEVISRARIIPEDSGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240

Query: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300
           ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
Sbjct: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300

Query: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360
           GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
Sbjct: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360

Query: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420
           SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
Sbjct: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420

Query: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480
           ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
Sbjct: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480

Query: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540
           TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
Sbjct: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540

Query: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600
           MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
Sbjct: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600

Query: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660
           RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
Sbjct: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660

Query: 661 FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSK 720
           FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALD ARRS 
Sbjct: 661 FKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRSV 720

Query: 721 GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768
           GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF
Sbjct: 721 GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 767

[Close]

BLAST of CSPI05G05220 vs. NCBI nr
Match: XP_038874425.1 (general transcription and DNA repair factor IIH helicase subunit XPB1 [Benincasa hispida])

HSP 1 Score: 1498.8 bits (3879), Expect = 0.0e+00
Identity = 756/769 (98.31%), Postives = 764/769 (99.35%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGDKGRP+KKPKFGKEDYKKA+FE+DDVYHLDD DDDDRYGDK+GGKRDFSKLELKPD
Sbjct: 1   MGHGDKGRPSKKPKFGKEDYKKASFEEDDVYHLDDLDDDDRYGDKDGGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
Sbjct: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180

Query: 181 DEVIGRARVVHEDS-GNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQ 240
           DEVIGRAR++ EDS GNG+FT+SKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQ
Sbjct: 181 DEVIGRARIIPEDSRGNGDFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQ 240

Query: 241 VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR 300
           VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR
Sbjct: 241 VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR 300

Query: 301 SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS 360
           SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS
Sbjct: 301 SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS 360

Query: 361 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420
           DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
Sbjct: 361 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420

Query: 421 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480
           VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
Sbjct: 421 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480

Query: 481 MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 540
           MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY
Sbjct: 481 MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 540

Query: 541 AMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600
           AMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG
Sbjct: 541 AMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600

Query: 601 SRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY 660
           SRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
Sbjct: 601 SRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY 660

Query: 661 SFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRS 720
           SFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALD ARRS
Sbjct: 661 SFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRS 720

Query: 721 KGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 769
            GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA
Sbjct: 721 MGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 769

[Close]

BLAST of CSPI05G05220 vs. NCBI nr
Match: KAA0042740.1 (DNA repair helicase XPB1 [Cucumis melo var. makuwa])

HSP 1 Score: 1495.7 bits (3871), Expect = 0.0e+00
Identity = 756/768 (98.44%), Postives = 761/768 (99.09%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGD+GRP+KKPKFGKEDYKKANFEDDDVYHLDDPDDDDR GDKE GKRDFSKLELKPD
Sbjct: 1   MGHGDRGRPSKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRNGDKEVGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK
Sbjct: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180

Query: 181 DEVIGRARVVHEDSGNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240
           DEVI RAR++ EDSGNGEFT+SKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV
Sbjct: 181 DEVISRARIIPEDSGNGEFTISKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQV 240

Query: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300
           ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS
Sbjct: 241 ENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARS 300

Query: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360
           GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD
Sbjct: 301 GIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSD 360

Query: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420
           SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV
Sbjct: 361 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 420

Query: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480
           ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM
Sbjct: 421 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 480

Query: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540
           TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA
Sbjct: 481 TKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 540

Query: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600
           MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS
Sbjct: 541 MKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGS 600

Query: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660
           RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS
Sbjct: 601 RRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYS 660

Query: 661 FK-VITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRS 720
           FK VITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALD ARRS
Sbjct: 661 FKVVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDKARRS 720

Query: 721 KGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768
            GSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF
Sbjct: 721 VGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768

[Close]

BLAST of CSPI05G05220 vs. NCBI nr
Match: XP_022928981.1 (DNA repair helicase XPB1-like isoform X1 [Cucurbita moschata] >XP_022969990.1 DNA repair helicase XPB1-like [Cucurbita maxima] >XP_023550801.1 DNA repair helicase XPB1-like [Cucurbita pepo subsp. pepo] >KAG6579520.1 General transcription and DNA repair factor IIH helicase subunit XPB1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016980.1 DNA repair helicase XPB1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1469.9 bits (3804), Expect = 0.0e+00
Identity = 738/769 (95.97%), Postives = 757/769 (98.44%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKFGKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKPD 60
           MGHGDKGR +K+PKFGKEDYKKA+FE++D YH ++ DDDDR GDKEGGKRDFSKLELKPD
Sbjct: 1   MGHGDKGRSSKRPKFGKEDYKKAHFEEEDAYHFEEFDDDDRNGDKEGGKRDFSKLELKPD 60

Query: 61  HANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120
           H NRPLWAC+DGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG
Sbjct: 61  HTNRPLWACSDGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVG 120

Query: 121 LETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLLK 180
           LET+TIIAVLSKLSKAKLPKEMIDFIYAST+NYGKVKLVLKKNRYLVESPFPEVLQKLL+
Sbjct: 121 LETDTIIAVLSKLSKAKLPKEMIDFIYASTSNYGKVKLVLKKNRYLVESPFPEVLQKLLR 180

Query: 181 DEVIGRARVVHEDS-GNGEFTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPSQ 240
           DEVIGRAR++HEDS GNGEFT+SKTAGELG+RHEGLLNEAEAAAAAEERETHSFEIDP+Q
Sbjct: 181 DEVIGRARIIHEDSHGNGEFTISKTAGELGNRHEGLLNEAEAAAAAEERETHSFEIDPAQ 240

Query: 241 VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR 300
           VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR
Sbjct: 241 VENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRAR 300

Query: 301 SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS 360
           SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS
Sbjct: 301 SGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTS 360

Query: 361 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420
           DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK
Sbjct: 361 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 420

Query: 421 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480
           VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP
Sbjct: 421 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 480

Query: 481 MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 540
           MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY
Sbjct: 481 MTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 540

Query: 541 AMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600
           AMKLRKPMIYGATSH+ERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG
Sbjct: 541 AMKLRKPMIYGATSHLERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAG 600

Query: 601 SRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY 660
           SRRQEAQRLGRILRAKGK QDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY
Sbjct: 601 SRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGY 660

Query: 661 SFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRS 720
           SFKVITSLPPADAGA+LSYHRLDDQLALLGKVLNAGDDMVGLEQLEDD DQIALD ARR 
Sbjct: 661 SFKVITSLPPADAGADLSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDTDQIALDKARRM 720

Query: 721 KGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRFA 769
            GSMSAMSGANGMVYMEYSTGRKLAGQGQ+KSKPKDPAKRHHLFKKRFA
Sbjct: 721 TGSMSAMSGANGMVYMEYSTGRKLAGQGQMKSKPKDPAKRHHLFKKRFA 769

[Close]

BLAST of CSPI05G05220 vs. TAIR 10
Match: AT5G41370.1 (homolog of xeroderma pigmentosum complementation group B 1 )

HSP 1 Score: 1305.4 bits (3377), Expect = 0.0e+00
Identity = 665/769 (86.48%), Postives = 712/769 (92.59%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKF-GKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKP 60
           MG+G++GRPNKK K+ GK+D K  N ++ + Y+ DD D+D R G+ E  KRDF+KLELKP
Sbjct: 1   MGNGERGRPNKKMKYGGKDDQKMKNIQNAEDYY-DDADEDSRDGEGEEKKRDFTKLELKP 60

Query: 61  DHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 120
           DH NRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
Sbjct: 61  DHGNRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 120

Query: 121 GLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLL 180
           GLETETII+VL+KLSK KLPKEMI+FI+AST NYGKVKLVLKKNRY +ESPFPEVL++LL
Sbjct: 121 GLETETIISVLNKLSKTKLPKEMIEFIHASTANYGKVKLVLKKNRYFIESPFPEVLKRLL 180

Query: 181 KDEVIGRARVVHEDSGNGE-FTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPS 240
            D+VI RAR   E    G+ F+V +T GEL +    LLNEAE AAAAEE+ETHSFEIDP+
Sbjct: 181 SDDVINRARFSSEPYYGGDGFSVGRTCGELEAGPGELLNEAEFAAAAEEKETHSFEIDPA 240

Query: 241 QVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRA 300
           QVENVKQRCLPNALNYPMLEEYDFRND +NPDLDMELKP AQPRPYQEKSLSKMFGNGRA
Sbjct: 241 QVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRA 300

Query: 301 RSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT 360
           RSGIIVLPCGAGKSLVGVSAA+RI+KSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT
Sbjct: 301 RSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT 360

Query: 361 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 420
           SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE+RNREWGLLLMDEVHVVPAHMFR
Sbjct: 361 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFR 420

Query: 421 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 480
           KVIS+TKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC
Sbjct: 421 KVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 480

Query: 481 PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 540
           PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE
Sbjct: 481 PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 540

Query: 541 YAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHA 600
           YAMKLRKPMIYGATSHIERTKILEAFKTS+DVNTVFLSKVGDNSIDIPEANVIIQISSHA
Sbjct: 541 YAMKLRKPMIYGATSHIERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHA 600

Query: 601 GSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG 660
           GSRRQEAQRLGRILRAKGK +DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG
Sbjct: 601 GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG 660

Query: 661 YSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARR 720
           YSFKVITSLPP DAG+ LSYH  ++QL+LLGKV+NAGDD+VGLEQLE+D D +AL  ARR
Sbjct: 661 YSFKVITSLPPPDAGSSLSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARR 720

Query: 721 SKGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768
           S GSMS MSG+ GMVYMEY++GR  +GQ Q K KPKDP KRH+LFKKR+
Sbjct: 721 SMGSMSVMSGSKGMVYMEYNSGRHKSGQ-QFK-KPKDPTKRHNLFKKRY 766

[Close]

BLAST of CSPI05G05220 vs. TAIR 10
Match: AT5G41360.1 (homolog of Xeroderma pigmentosum complementation group B 2 )

HSP 1 Score: 1276.5 bits (3302), Expect = 0.0e+00
Identity = 650/769 (84.53%), Postives = 702/769 (91.29%), Query Frame = 0


Query: 1   MGHGDKGRPNKKPKF-GKEDYKKANFEDDDVYHLDDPDDDDRYGDKEGGKRDFSKLELKP 60
           MG+ ++ RP KK K+ GK+D K  N ++ + Y+ DD D+D R G+ E  +RDF+ LELKP
Sbjct: 1   MGNDERKRPTKKMKYGGKDDQKMKNIQNVEDYY-DDADEDSRDGEGEEKRRDFTDLELKP 60

Query: 61  DHANRPLWACADGRIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 120
           DH NRPLWACADG+IFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV
Sbjct: 61  DHGNRPLWACADGKIFLETFSPLYKQAYDFLIAIAEPVCRPESMHEYNLTPHSLYAAVSV 120

Query: 121 GLETETIIAVLSKLSKAKLPKEMIDFIYASTTNYGKVKLVLKKNRYLVESPFPEVLQKLL 180
           GLETETII+VL+KLSK KLP E+IDFI+AST NYGKVKLVLKKNRY +ESPFPEVL++LL
Sbjct: 121 GLETETIISVLNKLSKTKLPGEIIDFIHASTANYGKVKLVLKKNRYFIESPFPEVLKRLL 180

Query: 181 KDEVIGRARVVHEDSGNGE-FTVSKTAGELGSRHEGLLNEAEAAAAAEERETHSFEIDPS 240
            D+VI RAR   E    G+ FT+ KT+GEL +    LLNEAE AAAAEE+ETHSFEIDP+
Sbjct: 181 SDDVINRARFTSEPYYGGDGFTIGKTSGELEAGPGELLNEAELAAAAEEKETHSFEIDPA 240

Query: 241 QVENVKQRCLPNALNYPMLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRA 300
            VENVKQRCLPNALNYPMLEEYDFRND +NPDLDMELKP AQPRPYQEKSLSKMFGNGRA
Sbjct: 241 LVENVKQRCLPNALNYPMLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRA 300

Query: 301 RSGIIVLPCGAGKSLVGVSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFT 360
           RSGIIVLPCGAGKSLVGVSAA+RI+KSCLCLATNAVSVDQWA+QFKLWSTI+DDQICRFT
Sbjct: 301 RSGIIVLPCGAGKSLVGVSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFT 360

Query: 361 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 420
           SDSKERFRGNAGVVVTTYNM+AFGGKRSEE+EKIIEE+RNREWGLLLMDEVHVVPAHMFR
Sbjct: 361 SDSKERFRGNAGVVVTTYNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFR 420

Query: 421 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 480
           KVIS+TKSHCKLGLTATLVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC
Sbjct: 421 KVISITKSHCKLGLTATLVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 480

Query: 481 PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 540
           PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE
Sbjct: 481 PMTKEFFAEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 540

Query: 541 YAMKLRKPMIYGATSHIERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHA 600
           YAMKLRKPMIYGATSHIERTKILEAFKTS+ VNTVFLSKVGDNSIDIPEANVIIQISSHA
Sbjct: 541 YAMKLRKPMIYGATSHIERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHA 600

Query: 601 GSRRQEAQRLGRILRAKGKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG 660
           GSRRQEAQRLGRILRAKGK +DRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG
Sbjct: 601 GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQG 660

Query: 661 YSFKVITSLPPADAGAELSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARR 720
           YSFKVITSLPP DAG+ L YH  ++QL+LLGKVLNAGDDMVGLEQLE+D D  AL   RR
Sbjct: 661 YSFKVITSLPPPDAGSSLGYHSQEEQLSLLGKVLNAGDDMVGLEQLEEDTDGKAL-KTRR 720

Query: 721 SKGSMSAMSGANGMVYMEYSTGRKLAGQGQLKSKPKDPAKRHHLFKKRF 768
           S GSMSAMSGANG VYMEY++GR+ +  G    KPKDP KRH++FKKR+
Sbjct: 721 SMGSMSAMSGANGRVYMEYNSGRQKS--GNQSKKPKDPTKRHNIFKKRY 765

The following BLAST results are available for this feature:

BLAST of CSPI05G05220 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38861	0.0e+00	86.48	General transcription and DNA repair factor IIH helicase subunit XPB1 OS=Arabido...	[more]
Q9FUG4	0.0e+00	84.53	General transcription and DNA repair factor IIH helicase subunit XPB2 OS=Arabido...	[more]
O00835	4.3e-237	59.89	General transcription and DNA repair factor IIH helicase subunit XPB OS=Dictyost...	[more]
P49135	8.4e-217	52.80	General transcription and DNA repair factor IIH helicase subunit XPB OS=Mus musc...	[more]
P19447	1.4e-216	52.35	General transcription and DNA repair factor IIH helicase subunit XPB OS=Homo sap...	[more]

BLAST of CSPI05G05220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKI0	0.0e+00	100.00	DNA helicase OS=Cucumis sativus OX=3659 GN=Csa_5G152930 PE=3 SV=1	[more]
A0A1S3ATU9	0.0e+00	98.57	DNA helicase OS=Cucumis melo OX=3656 GN=LOC103482768 PE=3 SV=1	[more]
A0A5A7THB1	0.0e+00	98.44	DNA helicase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002390 P...	[more]
A0A6J1I1I0	0.0e+00	95.97	DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111469016 PE=3 SV=1	[more]
A0A6J1ELT7	0.0e+00	95.97	DNA helicase OS=Cucurbita moschata OX=3662 GN=LOC111435717 PE=3 SV=1	[more]

BLAST of CSPI05G05220 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654733.1	0.0e+00	100.00	general transcription and DNA repair factor IIH helicase subunit XPB1 [Cucumis s...	[more]
XP_008437310.1	0.0e+00	98.57	PREDICTED: DNA repair helicase XPB1 [Cucumis melo]	[more]
XP_038874425.1	0.0e+00	98.31	general transcription and DNA repair factor IIH helicase subunit XPB1 [Benincasa...	[more]
KAA0042740.1	0.0e+00	98.44	DNA repair helicase XPB1 [Cucumis melo var. makuwa]	[more]
XP_022928981.1	0.0e+00	95.97	DNA repair helicase XPB1-like isoform X1 [Cucurbita moschata] >XP_022969990.1 DN...	[more]

BLAST of CSPI05G05220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41370.1	0.0e+00	86.48	homolog of xeroderma pigmentosum complementation group B 1	[more]
AT5G41360.1	0.0e+00	84.53	homolog of Xeroderma pigmentosum complementation group B 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00851	XRODRMPGMNTB	coord: 590..615 score: 90.38 coord: 466..488 score: 79.35 coord: 524..546 score: 72.28 coord: 262..288 score: 72.69 coord: 718..737 score: 58.75 coord: 64..84 score: 67.26 coord: 293..315 score: 95.65 coord: 504..519 score: 82.81 coord: 627..650 score: 88.02 coord: 571..589 score: 78.29 coord: 150..169 score: 76.88 coord: 400..420 score: 73.81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 754..768
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 744..768
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	PANTHER	PTHR11274:SF17	DNA REPAIR HELICASE XPB1-LIKE	coord: 4..767
None	No IPR available	PANTHER	PTHR11274	RAD25/XP-B DNA REPAIR HELICASE	coord: 4..767
None	No IPR available	CDD	cd18029	DEXHc_XPB	coord: 273..442 e-value: 7.38576E-101 score: 306.15
None	No IPR available	CDD	cd18789	SF2_C_XPB	coord: 473..637 e-value: 5.7902E-84 score: 261.415
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 277..458 e-value: 9.5E-20 score: 81.6
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 292..454 score: 17.890491
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 537..615 e-value: 3.0E-9 score: 46.7
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 509..675 score: 11.99777
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 463..703 e-value: 6.3E-66 score: 224.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 271..462 e-value: 2.9E-36 score: 126.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 390..704
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 240..456
IPR001161	Helicase XPB/Ssl2	TIGRFAM	TIGR00603	TIGR00603	coord: 220..765 e-value: 8.9E-291 score: 964.4
IPR006935	Helicase/UvrB, N-terminal	PFAM	PF04851	ResIII	coord: 280..436 e-value: 2.8E-14 score: 53.5
IPR032438	ERCC3/RAD25/XPB helicase, C-terminal domain	PFAM	PF16203	ERCC3_RAD25_C	coord: 462..710 e-value: 9.2E-116 score: 385.4
IPR032830	Helicase XPB/Ssl2, N-terminal domain	PFAM	PF13625	Helicase_C_3	coord: 66..189 e-value: 2.7E-32 score: 111.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G05220.1	CSPI05G05220.1	mRNA
CSPI05G05220.2	CSPI05G05220.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0033683	nucleotide-excision repair, DNA incision
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
biological_process	GO:0006289	nucleotide-excision repair
cellular_component	GO:0000112	nucleotide-excision repair factor 3 complex
cellular_component	GO:0005675	transcription factor TFIIH holo complex
cellular_component	GO:0097550	transcription preinitiation complex
molecular_function	GO:0043138	3'-5' DNA helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0016787	hydrolase activity