CSPI05G04800 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G04800
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Cox19-like CHCH family protein
Location	Chr5: 4588372 .. 4590412 (-)
RNA-Seq Expression	CSPI05G04800
Synteny	CSPI05G04800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTTTCCCTCTCGTTCTCTCTCCATTCTTCTTTCCTTTGTTAAAACAAGCTGCAGCAGCACACCGGTTTTTGAAATCCACTTCCATTTCCGCCATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCTTTTGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCAGCAAGGTATTTCAGTCATTCCTTTTCTTCAATTTGCCCTAACCCTTCATCATTTCTTTTCGTGGGTTCTTGTTATTAATTAGTACTGTTGTTTTGGGAATTTTCGAATTTGGTCATCTAGCTCTCTTAATCGAAGTTCTATTGTCGTTCTTCGAATTGCGATAATTAATTTGTCGTTTTACTTTTAGGTTTAGTGAAATGAAAATAGATTCAGGTGGATTTTGGTTTATTGCTGATGATTAAGGTATTCATCGAACGTGTGGGGAGATATTGATTTGAATTTCTGTTTCTGATGTTGTTTTCTTTGTTTTGTTGTTTGCTTCAATAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATCATCAAGAAGAATGCTTGAAGGAAGCAATTTTGTAAGACTGATTTTGTTCATTTTAAAGAAGGGTCTTGTGTTACTTTACTTGAAAATTTTTTTCTTCATTTCTTGAAGAGATTGAACTTTCCTGAATTCTATCAAAATGATTTGAATCGAATTCTATCAAAATGGTGACCATTGAATTCCGCAATAAATTCAGTTTCTGGAATCTGAAAGATTGTCCATTTCTCATAGGTTATATTATAGCAAATCCATCGAATTTCTTCAGAACAACTTTCTTTCAACTCAAAGAAGCTTATGGATATCAATTATGTTTGTTTCGTTCAATCATTCTAATCTGTTATGCTAAGCACAATATTTAAGTTGGTCTCTTGGACCAACATGGCACCGACACGACGGCCTTTTTTTATCTATTCAACAATTGTTCTAATAAATATGACATGAACGCTAAAAATGTCTGCTTTATTAACAATAGTTAATTTAAAAAGAAACAAAACTGACAAGGGAAGATGGACAAGAAAAATCCACCATTGAGGTAAAAGAAATCATCATTTTCATTAATTTACATGTAAAGTTTAGTCCATGAGATCATATTTTCCTATCATAAATTCTTCAACCCCATTTGAAATCTGAATCTGAATCTGAATTAGTTTTGTGAAGGAATTTATAAACTGACGTAAAGATCCGCTGAATGGATAATGTAGGTGAGCACCAACGCCAACAACATCAATACATAGGCAATCCCCTGATCTATGCTTGTTCCTACAAATCAAAATTACAACAATTTTCCATCAGTTAAGATGAACAAAAATGGTTATAAAAAGTGTGGTTAAAAAATGATCAGACGAAGATGAAGAAGTTACCATCGCCAGTAGCAGGTGGTTGAGCCGGAGACAACGATTGAGCATAAGCAGAGGAAAGCCTGGTCAAAACTAAAGCAACAACAAACAAAATGCCACCAAAAGGGACCTTACAAGCAACGACCGCCATGTTGAAAAAAAAGGAGAAGCTTGTAATGGAAAATTAGTAAAGGAAGAAGGAATGAGATCTCTCTCACTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAACGTCTCTCAAGAATTGAAAAGGTTAAGAAGAAAAGGTCCGGAGAGGCGTAGCAGAGAGAGATATTATTAGAAAATTAAAGTGTATTTAGGCCGTGAATTGATAAATGATTTGAAACTGTCAAAAGGGGATGGGGGGAGAGGGCTAGCCAAACCCTCCAATTTGACAGTCCCTGTGTAGAAGAACGACGGCGTGGCAATGGCGGTCTGCTTCTCAATCAATGGGGCTATGGATTTTATAGCCTCATTTGCTTTGGAATGTTGTAACTACCAACTGCCATGTCCGTTTAAATCGCCCTTTTCATACCCTTTTATTGGATTTTCTTCAAATAGTCTATCATGGATCAATATAGC

mRNA sequence

CCCTTTTCCCTCTCGTTCTCTCTCCATTCTTCTTTCCTTTGTTAAAACAAGCTGCAGCAGCACACCGGTTTTTGAAATCCACTTCCATTTCCGCCATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCTTTTGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCAGCAAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATCATCAAGAAGAATGCTTGAAGGAAGCAATTTTGTGAGCACCAACGCCAACAACATCAATACATAGGCAATCCCCTGATCTATGCTTGTTCCTACAAATCAAAATTACAACAATTTTCCATCAGTTAAGATGAACAAAAATGGTTATAAAAAGTGTGGTTAAAAAATGATCAGACGAAGATGAAGAAGTTACCATCGCCAGTAGCAGGTGGTTGAGCCGGAGACAACGATTGAGCATAAGCAGAGGAAAGCCTGGTCAAAACTAAAGCAACAACAAACAAAATGCCACCAAAAGGGACCTTACAAGCAACGACCGCCATGTTGAAAAAAAAGGAGAAGCTTGTAATGGAAAATTAGTAAAGGAAGAAGGAATGAGATCTCTCTCACTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCAACGTCTCTCAAGAATTGAAAAGGTTAAGAAGAAAAGGTCCGGAGAGGCGTAGCAGAGAGAGATATTATTAGAAAATTAAAGTGTATTTAGGCCGTGAATTGATAAATGATTTGAAACTGTCAAAAGGGGATGGGGGGAGAGGGCTAGCCAAACCCTCCAATTTGACAGTCCCTGTGTAGAAGAACGACGGCGTGGCAATGGCGGTCTGCTTCTCAATCAATGGGGCTATGGATTTTATAGCCTCATTTGCTTTGGAATGTTGTAACTACCAACTGCCATGTCCGTTTAAATCGCCCTTTTCATACCCTTTTATTGGATTTTCTTCAAATAGTCTATCATGGATCAATATAGC

Coding sequence (CDS)

ATGGATGAACCTCAACCTCAGCCGGTTTGCGCTCAGGAAGCTCTCAATTTGCTCAATTGCGTTACGGAATCTCCTTTTGATCAAGAGAAATGCTACCGTCTCCTTCATTCTTTGCGTGAATGCGTGCTCAGCAAGAAAGTGAAGAAATTCTCTCTGGCTGAAGAAGAACAAACAAAACCAATCATCAAGAAGAATGCTTGA

Protein sequence

MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKPIIKKNA*

Homology

[Close]

BLAST of CSPI05G04800 vs. ExPASy TrEMBL
Match: A0A0A0KQS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.9e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          IIKKNA
Sbjct: 61 IIKKNA 66

[Close]

BLAST of CSPI05G04800 vs. ExPASy TrEMBL
Match: A0A5D3C4E2 (Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G002030 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.9e-28
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          I+KKN+
Sbjct: 61 IVKKNS 66

[Close]

BLAST of CSPI05G04800 vs. ExPASy TrEMBL
Match: A0A5J4ZSA8 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011592 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.6e-18
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MDEPQ-PQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEE--Q 60
          MD+ Q PQPVCAQEALNLLNCVTESPFDQ+KC RLLHSLR+CV SKKVKKFSLAE++  +
Sbjct: 1  MDQGQPPQPVCAQEALNLLNCVTESPFDQDKCLRLLHSLRDCVQSKKVKKFSLAEQKGGE 60

Query: 61 TKPIIKKN 66
            PI KK+
Sbjct: 61 ADPISKKH 68

[Close]

BLAST of CSPI05G04800 vs. ExPASy TrEMBL
Match: A0A061GD02 (Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 0


Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQ--T 60
          M+E   QPVCAQEAL LLNCVT+SPFDQEKC RLLHSLR+CVL KKVKKFSL  ++Q  T
Sbjct: 1  MEEAGAQPVCAQEALALLNCVTQSPFDQEKCIRLLHSLRQCVLDKKVKKFSLDNQDQQDT 60

Query: 61 KPIIKKN 66
            + KKN
Sbjct: 61 DSVSKKN 67

[Close]

BLAST of CSPI05G04800 vs. ExPASy TrEMBL
Match: A0A7J7CJI7 (Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 44/56 (78.57%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEE 57
          MDE + +PVCAQEAL+LLNCVT+SPFDQEKC +LL+SLRECVL+KKVKKFSLA++E
Sbjct: 1  MDEARARPVCAQEALDLLNCVTQSPFDQEKCVQLLNSLRECVLNKKVKKFSLADQE 56

[Close]

BLAST of CSPI05G04800 vs. NCBI nr
Match: KGN50036.1 (hypothetical protein Csa_000619 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 1.2e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          IIKKNA
Sbjct: 61 IIKKNA 66

[Close]

BLAST of CSPI05G04800 vs. NCBI nr
Match: KAA0042698.1 (Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like CHCH family protein [Cucumis melo var. makuwa])

HSP 1 Score: 133.3 bits (334), Expect = 8.0e-28
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MDEPQPQPVCAQEALNLLNCVTESPFDQ+KCYRLLHSLRECVLSKKVKKFSLAEEEQTKP
Sbjct: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQDKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60

Query: 61 IIKKNA 67
          I+KKN+
Sbjct: 61 IVKKNS 66

[Close]

BLAST of CSPI05G04800 vs. NCBI nr
Match: KAG6606053.1 (hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 108.6 bits (270), Expect = 2.1e-20
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          MD+ Q QPVCAQEAL+LLNCVT+SPFDQEKCYRLLHSLRECVLSKKVKKFSLA+EE+ K 
Sbjct: 1  MDDAQAQPVCAQEALDLLNCVTDSPFDQEKCYRLLHSLRECVLSKKVKKFSLADEERAKR 60

Query: 61 IIKKN 66
            KK+
Sbjct: 61 SGKKS 65

[Close]

BLAST of CSPI05G04800 vs. NCBI nr
Match: KAG7017003.1 (hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 4.4e-18
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1  MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEEQTKP 60
          M EP+ QPVCAQEAL+LLNCVTESPFDQ+KCYRLLHSLRECV+S   KKFSLA+EEQTK 
Sbjct: 13 MGEPRSQPVCAQEALDLLNCVTESPFDQQKCYRLLHSLRECVIS---KKFSLADEEQTKQ 72

Query: 61 IIKKNA 67
          +  KNA
Sbjct: 73 M--KNA 73

[Close]

BLAST of CSPI05G04800 vs. NCBI nr
Match: KAA8520919.1 (hypothetical protein F0562_011592 [Nyssa sinensis])

HSP 1 Score: 100.1 bits (248), Expect = 7.5e-18
Identity = 52/68 (76.47%), Postives = 59/68 (86.76%), Query Frame = 0


Query: 1  MDEPQ-PQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEE--Q 60
          MD+ Q PQPVCAQEALNLLNCVTESPFDQ+KC RLLHSLR+CV SKKVKKFSLAE++  +
Sbjct: 1  MDQGQPPQPVCAQEALNLLNCVTESPFDQDKCLRLLHSLRDCVQSKKVKKFSLAEQKGGE 60

Query: 61 TKPIIKKN 66
            PI KK+
Sbjct: 61 ADPISKKH 68

[Close]

BLAST of CSPI05G04800 vs. TAIR 10
Match: AT4G23760.1 (Cox19-like CHCH family protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.8e-17
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1   MDEPQPQPVCAQEALNLLNCVTESPFDQEKCYRLLHSLRECVLSKKVKKFSLAEEE 57
           M++   QP+C QEAL LLNCV ESPFDQEKC R L SLRECVLSKKVKKFS+  ++
Sbjct: 47  MEKQSTQPICGQEALQLLNCVAESPFDQEKCVRFLQSLRECVLSKKVKKFSIPSQD 102

The following BLAST results are available for this feature:

BLAST of CSPI05G04800 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G04800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQS7	5.9e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151520 PE=4 SV=1	[more]
A0A5D3C4E2	3.9e-28	95.45	Cox19-like CHCH family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5J4ZSA8	3.6e-18	76.47	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_011592 PE=4 SV=1	[more]
A0A061GD02	2.0e-16	71.64	Cox19-like CHCH family protein OS=Theobroma cacao OX=3641 GN=TCM_016398 PE=4 SV=...	[more]
A0A7J7CJI7	2.0e-16	78.57	Uncharacterized protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW16G00654 ...	[more]

BLAST of CSPI05G04800 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50036.1	1.2e-28	100.00	hypothetical protein Csa_000619 [Cucumis sativus]	[more]
KAA0042698.1	8.0e-28	95.45	Cox19-like CHCH family protein [Cucumis melo var. makuwa] >TYK06102.1 Cox19-like...	[more]
KAG6606053.1	2.1e-20	81.54	hypothetical protein SDJN03_03370, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7017003.1	4.4e-18	78.79	hypothetical protein SDJN02_22114, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA8520919.1	7.5e-18	76.47	hypothetical protein F0562_011592 [Nyssa sinensis]	[more]

BLAST of CSPI05G04800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23760.1	1.8e-17	69.64	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.287.1130	CytochromE C oxidase copper chaperone	coord: 5..65 e-value: 5.0E-6 score: 28.4
None	No IPR available	PANTHER	PTHR37750	COX19-LIKE CHCH FAMILY PROTEIN	coord: 1..59
None	No IPR available	PROSITE	PS51808	CHCH	coord: 7..49 score: 10.869217
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 7..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G04800.1	CSPI05G04800.1	mRNA
CSPI05G04800.2	CSPI05G04800.2	mRNA