CSPI05G03360 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G03360
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	transcription factor TRY
Location	Chr5: 3626802 .. 3627844 (+)
RNA-Seq Expression	CSPI05G03360
Synteny	CSPI05G03360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTTTCTCTCTCAAAGATTTCAATATTTTAATCTTGTCTTTTATCCCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAACCAACAAACTTACTTCCTAAAGTTTGGTGGGAAGAAGAAACTACAGGCATGCACATAAACTTAAATTTGCCCCTGGATGTTTCAAATCTGTCTATCACAGTTTTTCCTAAAATTCTTTCATTCCCAGTTCTTTAGCTTCTTGTTTTTGTGCTGCCTCTAATCTTTGAAGAAACATGGACAATCATCGTCACCAGAAACCGGCCAAAATCTCTCCACTAGAATCCGAAGGTCTATTTCATAATTCATTACCTCGATTTTCTACCTTACTCATCCTAGTGTTGGTCTCTTCGTCATGAGTTTCACTTTTTTATGATATTTTAAGTCCTACTTCCATTTTGTGAATTTGTGGCTTGTTATCTAACAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCACAAGCTGATTGGAGATAGGTAAGTTGGGTTCAAAACAACCCAGGTTTACAGAATTCTCCCACTTATCTAAACAATAATGAAGACAGTTTCTGTTATCTCTCCTTTATTGCCTTTCCAATTACCTCAAGCATCTGAGTTTCCAAGAAAATGATCTTTCATTTCAGGTGGGATCTCATAGCAGGCAGAATTCCGGGGCGAAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGAGAGAGACAGAGAGATACAGGCAATGAGGGTTCAGTCAATAAGTCCTCAAAGACTTCTGATGGGTTCTCTACTTCATCGTTTGTGGTCTCCCTGAAGATAACCATCTCCCTAATAGCTTTAGTGTATTACAAGTACCCTTTCTAAGAACACATGGTATGGAACAGAGCTATCTTTTATCAATCAAATAACACAGTATAATTTATGATTCCAAATCAAAAACTAAAGCAAAGAGCAAAG

mRNA sequence

TCTCTCTCTCTCTCTCTTTCTCTCTCAAAGATTTCAATATTTTAATCTTGTCTTTTATCCCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAACCAACAAACTTACTTCCTAAAGTTTGGTGGGAAGAAGAAACTACAGGCATGCACATAAACTTAAATTTGCCCCTGGATGTTTCAAATCTGTCTATCACAGTTTTTCCTAAAATTCTTTCATTCCCAGTTCTTTAGCTTCTTGTTTTTGTGCTGCCTCTAATCTTTGAAGAAACATGGACAATCATCGTCACCAGAAACCGGCCAAAATCTCTCCACTAGAATCCGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCACAAGCTGATTGGAGATAGGTGGGATCTCATAGCAGGCAGAATTCCGGGGCGAAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGAGAGAGACAGAGAGATACAGGCAATGAGGGTTCAGTCAATAAGTCCTCAAAGACTTCTGATGGGTTCTCTACTTCATCGTTTGTGGTCTCCCTGAAGATAACCATCTCCCTAATAGCTTTAGTGTATTACAAGTACCCTTTCTAAGAACACATGGTATGGAACAGAGCTATCTTTTATCAATCAAATAACACAGTATAATTTATGATTCCAAATCAAAAACTAAAGCAAAGAGCAAAG

Coding sequence (CDS)

ATGGACAATCATCGTCACCAGAAACCGGCCAAAATCTCTCCACTAGAATCCGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCACAAGCTGATTGGAGATAGGTGGGATCTCATAGCAGGCAGAATTCCGGGGCGAAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGA

Protein sequence

MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG*

Homology

[Close]

BLAST of CSPI05G03360 vs. ExPASy Swiss-Prot
Match: Q8GV05 (Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-25
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 2  DNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +K  KI+  +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF  +RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of CSPI05G03360 vs. ExPASy Swiss-Prot
Match: O22059 (Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.3e-21
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R ++ +K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 72

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYW+M H   F  RRR
Sbjct: 73 ERYWLMKHGVVFANRRR 89

[Close]

BLAST of CSPI05G03360 vs. ExPASy Swiss-Prot
Match: Q84RD1 (MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.6e-20
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 13 SPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTH 72
          S  +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIERYWIM +
Sbjct: 23 SRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIERYWIMRN 82

Query: 73 LEGFGKRRR 82
           + F  +RR
Sbjct: 83 SDYFSHKRR 91

[Close]

BLAST of CSPI05G03360 vs. ExPASy Swiss-Prot
Match: B3H4X8 (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.8e-19
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +K +K +  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYWIM + +    +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]

BLAST of CSPI05G03360 vs. ExPASy Swiss-Prot
Match: Q9M157 (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-19
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPL---ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIP 60
          MDNHR  K  K + +    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIP
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIP 60

Query: 61 GRKPEEIERYWIM 71
          GR   EIER+W+M
Sbjct: 61 GRTAGEIERFWVM 73

[Close]

BLAST of CSPI05G03360 vs. ExPASy TrEMBL
Match: I6NF75 (R3 MYB transcription factor OS=Cucumis sativus OX=3659 GN=TRY PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.9e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. ExPASy TrEMBL
Match: A0A5D3C2B2 (Transcription factor TRY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00630 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.4e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKISPL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. ExPASy TrEMBL
Match: A0A1S4DSB1 (transcription factor TRY OS=Cucumis melo OX=3656 GN=LOC103482948 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.4e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKISPL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. ExPASy TrEMBL
Match: A0A6J1IC17 (transcription factor TRY-like OS=Cucurbita maxima OX=3661 GN=LOC111471570 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.6e-38
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          M+NHR QK AK+ PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MNNHRQQKHAKLPPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. ExPASy TrEMBL
Match: A0A6J1E339 (transcription factor TRY-like OS=Cucurbita moschata OX=3662 GN=LOC111430352 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 7.3e-37
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          M NHR QK AK+ PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MSNHRQQKHAKLPPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFG RRRG
Sbjct: 61 PEEIERYWIMTHLEGFGIRRRG 82

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: XP_031742154.1 (transcription factor TRY [Cucumis sativus] >AET79925.1 R3 MYB transcription factor [Cucumis sativus] >KGN49883.1 hypothetical protein Csa_000375 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 6.0e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: XP_016898876.1 (PREDICTED: transcription factor TRY [Cucumis melo] >KAA0042563.1 transcription factor TRY [Cucumis melo var. makuwa] >TYK05967.1 transcription factor TRY [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.1e-39
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKISPL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: XP_038875738.1 (transcription factor TRY [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKI+ LESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKITLLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: XP_022973073.1 (transcription factor TRY-like [Cucurbita maxima] >XP_023549596.1 transcription factor TRY-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.0 bits (419), Expect = 1.4e-37
Identity = 77/82 (93.90%), Postives = 79/82 (96.34%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          M+NHR QK AK+ PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MNNHRQQKHAKLPPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: XP_022922339.1 (transcription factor TRY-like [Cucurbita moschata])

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 76/82 (92.68%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          M NHR QK AK+ PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MSNHRQQKHAKLPPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFG RRRG
Sbjct: 61 PEEIERYWIMTHLEGFGIRRRG 82

[Close]

BLAST of CSPI05G03360 vs. TAIR 10
Match: AT5G53200.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 8.9e-27
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 0


Query: 2  DNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +K  KI+  +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF  +RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of CSPI05G03360 vs. TAIR 10
Match: AT2G46410.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 100.5 bits (249), Expect = 6.6e-22
Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R ++ +K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 72

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYW+M H   F  RRR
Sbjct: 73 ERYWLMKHGVVFANRRR 89

[Close]

BLAST of CSPI05G03360 vs. TAIR 10
Match: AT2G30420.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 3.3e-21
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 13 SPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTH 72
          S  +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIERYWIM +
Sbjct: 23 SRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIERYWIMRN 82

Query: 73 LEGFGKRRR 82
           + F  +RR
Sbjct: 83 SDYFSHKRR 91

[Close]

BLAST of CSPI05G03360 vs. TAIR 10
Match: AT2G30424.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 1.2e-20
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +K +K +  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYWIM + +    +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]

BLAST of CSPI05G03360 vs. TAIR 10
Match: AT4G01060.3 (CAPRICE-like MYB3 )

HSP 1 Score: 95.9 bits (237), Expect = 1.6e-20
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 0


Query: 1  MDNHRHQKPAKISPL---ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIP 60
          MDNHR  K  K + +    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIP
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIP 60

Query: 61 GRKPEEIERYWIM 71
          GR   EIER+W+M
Sbjct: 61 GRTAGEIERFWVM 73

The following BLAST results are available for this feature:

BLAST of CSPI05G03360 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GV05	1.3e-25	66.25	Transcription factor TRY OS=Arabidopsis thaliana OX=3702 GN=TRY PE=1 SV=1	[more]
O22059	9.3e-21	59.74	Transcription factor CPC OS=Arabidopsis thaliana OX=3702 GN=CPC PE=1 SV=1	[more]
Q84RD1	4.6e-20	63.77	MYB-like transcription factor ETC2 OS=Arabidopsis thaliana OX=3702 GN=ETC2 PE=1 ...	[more]
B3H4X8	1.8e-19	54.55	MYB-like transcription factor TCL2 OS=Arabidopsis thaliana OX=3702 GN=TCL2 PE=1 ...	[more]
Q9M157	2.3e-19	58.90	MYB-like transcription factor ETC3 OS=Arabidopsis thaliana OX=3702 GN=ETC3 PE=2 ...	[more]

BLAST of CSPI05G03360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
I6NF75	2.9e-41	100.00	R3 MYB transcription factor OS=Cucumis sativus OX=3659 GN=TRY PE=2 SV=1	[more]
A0A5D3C2B2	5.4e-40	97.56	Transcription factor TRY OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S4DSB1	5.4e-40	97.56	transcription factor TRY OS=Cucumis melo OX=3656 GN=LOC103482948 PE=4 SV=1	[more]
A0A6J1IC17	6.6e-38	93.90	transcription factor TRY-like OS=Cucurbita maxima OX=3661 GN=LOC111471570 PE=4 S...	[more]
A0A6J1E339	7.3e-37	92.68	transcription factor TRY-like OS=Cucurbita moschata OX=3662 GN=LOC111430352 PE=4...	[more]

BLAST of CSPI05G03360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742154.1	6.0e-41	100.00	transcription factor TRY [Cucumis sativus] >AET79925.1 R3 MYB transcription fact...	[more]
XP_016898876.1	1.1e-39	97.56	PREDICTED: transcription factor TRY [Cucumis melo] >KAA0042563.1 transcription f...	[more]
XP_038875738.1	1.6e-38	96.34	transcription factor TRY [Benincasa hispida]	[more]
XP_022973073.1	1.4e-37	93.90	transcription factor TRY-like [Cucurbita maxima] >XP_023549596.1 transcription f...	[more]
XP_022922339.1	1.5e-36	92.68	transcription factor TRY-like [Cucurbita moschata]	[more]

BLAST of CSPI05G03360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53200.1	8.9e-27	66.25	Homeodomain-like superfamily protein	[more]
AT2G46410.1	6.6e-22	59.74	Homeodomain-like superfamily protein	[more]
AT2G30420.1	3.3e-21	63.77	Homeodomain-like superfamily protein	[more]
AT2G30424.1	1.2e-20	54.55	Homeodomain-like superfamily protein	[more]
AT4G01060.3	1.6e-20	58.90	CAPRICE-like MYB3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 26..74 e-value: 8.4E-6 score: 35.3
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 29..68 e-value: 2.36636E-6 score: 38.7106
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 31..69 e-value: 3.0E-7 score: 30.5
None	No IPR available	GENE3D	1.10.10.60		coord: 30..74 e-value: 1.8E-9 score: 39.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR47998:SF12	MYB-LIKE TRANSCRIPTION FACTOR ETC3	coord: 1..79
None	No IPR available	PANTHER	PTHR47998	TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1	coord: 1..79
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 31..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G03360.1	CSPI05G03360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding