CSPI05G02880 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G02880
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 3363363 .. 3363659 (+)
RNA-Seq Expression	CSPI05G02880
Synteny	CSPI05G02880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGACATAAATGACAGGAATGAAGAACCGCTGTTGCTCTTGGCCAACAAGAATGGCCAAACATCCCTTGGGAGTCTCCACCTTGTTCCGATGGTGGTAAAAATGAGGGAAATGAATGTGGAAATGGAAATTGAGATGCAGGAGGTGCTGATGATGATGCTTGTCGCCACCGAAACCCATCGGAAAAAGGTGAAAGTGTTAAAGAGAAAAGGGCCAAGGATGGTAAGAGGAGATAGCGAGGGTGAAGAGAGTGAAAGAGGAATGAGTGAAGGAGGGAGGGATATTGGTCATTGA

mRNA sequence

ATGGTTGACATAAATGACAGGAATGAAGAACCGCTGTTGCTCTTGGCCAACAAGAATGGCCAAACATCCCTTGGGAGTCTCCACCTTGTTCCGATGGTGGTAAAAATGAGGGAAATGAATGTGGAAATGGAAATTGAGATGCAGGAGGTGCTGATGATGATGCTTGTCGCCACCGAAACCCATCGGAAAAAGGTGAAAGTGTTAAAGAGAAAAGGGCCAAGGATGGTAAGAGGAGATAGCGAGGGTGAAGAGAGTGAAAGAGGAATGAGTGAAGGAGGGAGGGATATTGGTCATTGA

Coding sequence (CDS)

ATGGTTGACATAAATGACAGGAATGAAGAACCGCTGTTGCTCTTGGCCAACAAGAATGGCCAAACATCCCTTGGGAGTCTCCACCTTGTTCCGATGGTGGTAAAAATGAGGGAAATGAATGTGGAAATGGAAATTGAGATGCAGGAGGTGCTGATGATGATGCTTGTCGCCACCGAAACCCATCGGAAAAAGGTGAAAGTGTTAAAGAGAAAAGGGCCAAGGATGGTAAGAGGAGATAGCGAGGGTGAAGAGAGTGAAAGAGGAATGAGTGAAGGAGGGAGGGATATTGGTCATTGA

Protein sequence

MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATETHRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH*

Homology

[Close]

BLAST of CSPI05G02880 vs. ExPASy TrEMBL
Match: A0A0A0KQ31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139105 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.8e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET 60
          MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET
Sbjct: 1  MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET 60

Query: 61 HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH 99
          HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH
Sbjct: 61 HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH 98

[Close]

BLAST of CSPI05G02880 vs. ExPASy TrEMBL
Match: A0A5A7TGK2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00190 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 6  DRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATETHRKKV 65
          D N+EPLLLLANKNGQTS GSLHLVPMVVKMR+MNVEMEI+MQEVL MMLVA ETHRK+ 
Sbjct: 38 DWNDEPLLLLANKNGQTSFGSLHLVPMVVKMRKMNVEMEIQMQEVL-MMLVAAETHRKRQ 97

Query: 66 KV 68
          KV
Sbjct: 98 KV 98

[Close]

BLAST of CSPI05G02880 vs. ExPASy TrEMBL
Match: A0A6J1E3M1 (uncharacterized protein LOC111430288 OS=Cucurbita moschata OX=3662 GN=LOC111430288 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MVDINDRNEEPLLLLANKNGQTSLGSLHLVP--MVVKMREMNVEMEIEMQEVLMMMLVA 58
           MV+INDRN EPLLLLA++N QT LGSLHLVP  MVVK+R+MN+EMEI+MQEVLM++  A
Sbjct: 61  MVNINDRNHEPLLLLADENCQTPLGSLHLVPMMMVVKVRQMNMEMEIQMQEVLMLVATA 119

[Close]

BLAST of CSPI05G02880 vs. NCBI nr
Match: KGN49831.1 (hypothetical protein Csa_000699 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 5.8e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET 60
          MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET
Sbjct: 1  MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET 60

Query: 61 HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH 99
          HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH
Sbjct: 61 HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH 98

[Close]

BLAST of CSPI05G02880 vs. NCBI nr
Match: XP_038875258.1 (uncharacterized protein LOC120067761 [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-18
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 0


Query: 1   MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMML---VA 60
           MVDIN+RN EPLLLLANKNGQTSLGSLHLVPMVVK+REMNVEMEI+M+EVLMM++    A
Sbjct: 61  MVDINNRNHEPLLLLANKNGQTSLGSLHLVPMVVKVREMNVEMEIQMEEVLMMLVTAAAA 120

Query: 61  TETHRKKVKVLKRKGPRMVRG 79
            E HRKK+K  +    +  +G
Sbjct: 121 AEPHRKKLKAKESAKEKRAKG 141

[Close]

BLAST of CSPI05G02880 vs. NCBI nr
Match: KAA0042524.1 (hypothetical protein E6C27_scaffold44G00170 [Cucumis melo var. makuwa] >TYK05927.1 hypothetical protein E5676_scaffold376G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 6  DRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATETHRKKV 65
          D N+EPLLLLANKNGQTS GSLHLVPMVVKMR+MNVEMEI+MQEVL MMLVA ETHRK+ 
Sbjct: 38 DWNDEPLLLLANKNGQTSFGSLHLVPMVVKMRKMNVEMEIQMQEVL-MMLVAAETHRKRQ 97

Query: 66 KV 68
          KV
Sbjct: 98 KV 98

[Close]

BLAST of CSPI05G02880 vs. NCBI nr
Match: XP_022922251.1 (uncharacterized protein LOC111430288 [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-11
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1   MVDINDRNEEPLLLLANKNGQTSLGSLHLVP--MVVKMREMNVEMEIEMQEVLMMMLVA 58
           MV+INDRN EPLLLLA++N QT LGSLHLVP  MVVK+R+MN+EMEI+MQEVLM++  A
Sbjct: 61  MVNINDRNHEPLLLLADENCQTPLGSLHLVPMMMVVKVRQMNMEMEIQMQEVLMLVATA 119

The following BLAST results are available for this feature:

BLAST of CSPI05G02880 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G02880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ31	2.8e-43	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139105 PE=4 SV=1	[more]
A0A5A7TGK2	1.0e-16	85.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1E3M1	2.8e-11	72.88	uncharacterized protein LOC111430288 OS=Cucurbita moschata OX=3662 GN=LOC1114302...	[more]

BLAST of CSPI05G02880 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49831.1	5.8e-43	100.00	hypothetical protein Csa_000699 [Cucumis sativus]	[more]
XP_038875258.1	5.0e-18	69.14	uncharacterized protein LOC120067761 [Benincasa hispida]	[more]
KAA0042524.1	2.1e-16	85.48	hypothetical protein E6C27_scaffold44G00170 [Cucumis melo var. makuwa] >TYK05927...	[more]
XP_022922251.1	5.9e-11	72.88	uncharacterized protein LOC111430288 [Cucurbita moschata]	[more]

BLAST of CSPI05G02880 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G02880.1	CSPI05G02880.1	mRNA