CSPI05G02880 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G02880
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 3363363 .. 3363659 (+)
RNA-Seq ExpressionCSPI05G02880
SyntenyCSPI05G02880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGACATAAATGACAGGAATGAAGAACCGCTGTTGCTCTTGGCCAACAAGAATGGCCAAACATCCCTTGGGAGTCTCCACCTTGTTCCGATGGTGGTAAAAATGAGGGAAATGAATGTGGAAATGGAAATTGAGATGCAGGAGGTGCTGATGATGATGCTTGTCGCCACCGAAACCCATCGGAAAAAGGTGAAAGTGTTAAAGAGAAAAGGGCCAAGGATGGTAAGAGGAGATAGCGAGGGTGAAGAGAGTGAAAGAGGAATGAGTGAAGGAGGGAGGGATATTGGTCATTGA

mRNA sequence

ATGGTTGACATAAATGACAGGAATGAAGAACCGCTGTTGCTCTTGGCCAACAAGAATGGCCAAACATCCCTTGGGAGTCTCCACCTTGTTCCGATGGTGGTAAAAATGAGGGAAATGAATGTGGAAATGGAAATTGAGATGCAGGAGGTGCTGATGATGATGCTTGTCGCCACCGAAACCCATCGGAAAAAGGTGAAAGTGTTAAAGAGAAAAGGGCCAAGGATGGTAAGAGGAGATAGCGAGGGTGAAGAGAGTGAAAGAGGAATGAGTGAAGGAGGGAGGGATATTGGTCATTGA

Coding sequence (CDS)

ATGGTTGACATAAATGACAGGAATGAAGAACCGCTGTTGCTCTTGGCCAACAAGAATGGCCAAACATCCCTTGGGAGTCTCCACCTTGTTCCGATGGTGGTAAAAATGAGGGAAATGAATGTGGAAATGGAAATTGAGATGCAGGAGGTGCTGATGATGATGCTTGTCGCCACCGAAACCCATCGGAAAAAGGTGAAAGTGTTAAAGAGAAAAGGGCCAAGGATGGTAAGAGGAGATAGCGAGGGTGAAGAGAGTGAAAGAGGAATGAGTGAAGGAGGGAGGGATATTGGTCATTGA

Protein sequence

MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATETHRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH*
Homology
BLAST of CSPI05G02880 vs. ExPASy TrEMBL
Match: A0A0A0KQ31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139105 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 2.8e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET 60
          MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET
Sbjct: 1  MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET 60

Query: 61 HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH 99
          HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH
Sbjct: 61 HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH 98

BLAST of CSPI05G02880 vs. ExPASy TrEMBL
Match: A0A5A7TGK2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00190 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 6  DRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATETHRKKV 65
          D N+EPLLLLANKNGQTS GSLHLVPMVVKMR+MNVEMEI+MQEVL MMLVA ETHRK+ 
Sbjct: 38 DWNDEPLLLLANKNGQTSFGSLHLVPMVVKMRKMNVEMEIQMQEVL-MMLVAAETHRKRQ 97

Query: 66 KV 68
          KV
Sbjct: 98 KV 98

BLAST of CSPI05G02880 vs. ExPASy TrEMBL
Match: A0A6J1E3M1 (uncharacterized protein LOC111430288 OS=Cucurbita moschata OX=3662 GN=LOC111430288 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 1   MVDINDRNEEPLLLLANKNGQTSLGSLHLVP--MVVKMREMNVEMEIEMQEVLMMMLVA 58
           MV+INDRN EPLLLLA++N QT LGSLHLVP  MVVK+R+MN+EMEI+MQEVLM++  A
Sbjct: 61  MVNINDRNHEPLLLLADENCQTPLGSLHLVPMMMVVKVRQMNMEMEIQMQEVLMLVATA 119

BLAST of CSPI05G02880 vs. NCBI nr
Match: KGN49831.1 (hypothetical protein Csa_000699 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 5.8e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET 60
          MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET
Sbjct: 1  MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATET 60

Query: 61 HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH 99
          HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH
Sbjct: 61 HRKKVKVLKRKGPRMVRGDSEGEESERGMSEGGRDIGH 98

BLAST of CSPI05G02880 vs. NCBI nr
Match: XP_038875258.1 (uncharacterized protein LOC120067761 [Benincasa hispida])

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-18
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 0

Query: 1   MVDINDRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMML---VA 60
           MVDIN+RN EPLLLLANKNGQTSLGSLHLVPMVVK+REMNVEMEI+M+EVLMM++    A
Sbjct: 61  MVDINNRNHEPLLLLANKNGQTSLGSLHLVPMVVKVREMNVEMEIQMEEVLMMLVTAAAA 120

Query: 61  TETHRKKVKVLKRKGPRMVRG 79
            E HRKK+K  +    +  +G
Sbjct: 121 AEPHRKKLKAKESAKEKRAKG 141

BLAST of CSPI05G02880 vs. NCBI nr
Match: KAA0042524.1 (hypothetical protein E6C27_scaffold44G00170 [Cucumis melo var. makuwa] >TYK05927.1 hypothetical protein E5676_scaffold376G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 6  DRNEEPLLLLANKNGQTSLGSLHLVPMVVKMREMNVEMEIEMQEVLMMMLVATETHRKKV 65
          D N+EPLLLLANKNGQTS GSLHLVPMVVKMR+MNVEMEI+MQEVL MMLVA ETHRK+ 
Sbjct: 38 DWNDEPLLLLANKNGQTSFGSLHLVPMVVKMRKMNVEMEIQMQEVL-MMLVAAETHRKRQ 97

Query: 66 KV 68
          KV
Sbjct: 98 KV 98

BLAST of CSPI05G02880 vs. NCBI nr
Match: XP_022922251.1 (uncharacterized protein LOC111430288 [Cucurbita moschata])

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-11
Identity = 43/59 (72.88%), Postives = 52/59 (88.14%), Query Frame = 0

Query: 1   MVDINDRNEEPLLLLANKNGQTSLGSLHLVP--MVVKMREMNVEMEIEMQEVLMMMLVA 58
           MV+INDRN EPLLLLA++N QT LGSLHLVP  MVVK+R+MN+EMEI+MQEVLM++  A
Sbjct: 61  MVNINDRNHEPLLLLADENCQTPLGSLHLVPMMMVVKVRQMNMEMEIQMQEVLMLVATA 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQ312.8e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139105 PE=4 SV=1[more]
A0A5A7TGK21.0e-1685.48Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1E3M12.8e-1172.88uncharacterized protein LOC111430288 OS=Cucurbita moschata OX=3662 GN=LOC1114302... [more]
Match NameE-valueIdentityDescription
KGN49831.15.8e-43100.00hypothetical protein Csa_000699 [Cucumis sativus][more]
XP_038875258.15.0e-1869.14uncharacterized protein LOC120067761 [Benincasa hispida][more]
KAA0042524.12.1e-1685.48hypothetical protein E6C27_scaffold44G00170 [Cucumis melo var. makuwa] >TYK05927... [more]
XP_022922251.15.9e-1172.88uncharacterized protein LOC111430288 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G02880.1CSPI05G02880.1mRNA