CSPI05G02430 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G02430
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribosomal_L7Ae domain-containing protein
Location	Chr5: 3096189 .. 3096500 (-)
RNA-Seq Expression	CSPI05G02430
Synteny	CSPI05G02430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGTAGGAAGTATTAGATTTTTTATGTGATGTGTTCTGTTCTAACTTTTTCCTTTTTCTAACAAAGCTGCATGTTTCCAAACGAACTGCAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACA

mRNA sequence

GCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACA

Coding sequence (CDS)

GCTATACTGTTAACAGCCAATTGCAACCCCCGATGGCTTACAAACCATGTGCCAACCTTGGCCATGTCTAGGAAGGTACCATTGATACTCGTGAAAGATAAAGAAGGATCATTAAGGTTAGGTGAACTCGTTAGCCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTATTAATCAACTCATTGATGAAATCCTTCAAAGAACAACA

Protein sequence

AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSPINQLIDEILQRTT

Homology

[Close]

BLAST of CSPI05G02430 vs. ExPASy TrEMBL
Match: A0A0A0KLN6 (Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G126730 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
          AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP
Sbjct: 11 AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 70

Query: 61 INQLIDEILQRTT 74
          INQLIDEILQRTT
Sbjct: 71 INQLIDEILQRTT 83

[Close]

BLAST of CSPI05G02430 vs. ExPASy TrEMBL
Match: A0A1S3CR39 (ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 98  AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 157

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 158 VNQLIDEILQRT 169

[Close]

BLAST of CSPI05G02430 vs. ExPASy TrEMBL
Match: A0A1S3CS60 (uncharacterized protein LOC103503720 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 116 AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 175

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 176 VNQLIDEILQRT 187

[Close]

BLAST of CSPI05G02430 vs. ExPASy TrEMBL
Match: A0A1S3CQU5 (uncharacterized protein LOC103503720 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 115 AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 174

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 175 VNQLIDEILQRT 186

[Close]

BLAST of CSPI05G02430 vs. ExPASy TrEMBL
Match: A0A1S3CS63 (uncharacterized protein LOC103503720 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103503720 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.7e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 114 AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 173

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 174 VNQLIDEILQRT 185

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: XP_011654557.1 (ribonuclease P protein subunit p38 [Cucumis sativus] >KAE8648306.1 hypothetical protein Csa_004653 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 2.9e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP
Sbjct: 99  AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 158

Query: 61  INQLIDEILQRTT 74
           INQLIDEILQRTT
Sbjct: 159 INQLIDEILQRTT 171

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: XP_038875290.1 (ribonuclease P protein subunit p38 [Benincasa hispida])

HSP 1 Score: 139.0 bits (349), Expect = 1.6e-29
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           A+LLTANCNPRWLTNHVP+LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIKANGSP
Sbjct: 97  AVLLTANCNPRWLTNHVPSLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSP 156

Query: 61  INQLIDEILQRTT 74
           +NQLIDEILQR T
Sbjct: 157 VNQLIDEILQRKT 169

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: XP_008466263.1 (PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 3.5e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 115 AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 174

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 175 VNQLIDEILQRT 186

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: XP_008466271.1 (PREDICTED: uncharacterized protein LOC103503720 isoform X3 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 3.5e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 114 AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 173

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 174 VNQLIDEILQRT 185

[Close]

BLAST of CSPI05G02430 vs. NCBI nr
Match: XP_008466280.1 (PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 3.5e-29
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   AILLTANCNPRWLTNHVPTLAMSRKVPLILVKDKEGSLRLGELVSLKTAIAIGIKANGSP 60
           AILLTANCNPRWLTNHVP LAMSRKVPLILVKDKEGSLRLGELV+LKTAIAIGIK+NGSP
Sbjct: 99  AILLTANCNPRWLTNHVPCLAMSRKVPLILVKDKEGSLRLGELVNLKTAIAIGIKSNGSP 158

Query: 61  INQLIDEILQRT 73
           +NQLIDEILQRT
Sbjct: 159 VNQLIDEILQRT 170

[Close]

BLAST of CSPI05G02430 vs. TAIR 10
Match: AT4G01790.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 85.5 bits (210), Expect = 1.9e-17
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 2   ILLTANCNPRWLTNHVPTLAMSRKVPLILVKD-KEGSLRLGELVSLKTAIAIGIKANGSP 61
           ++L A+C PR LT H+P LA SR VP++ V+D K  SLRLGELV LKTA+AIGIKA G+ 
Sbjct: 95  VILVADCKPRMLTKHIPNLAASRNVPVLYVRDNKRASLRLGELVKLKTALAIGIKARGND 154

Query: 62  INQLIDEILQR 72
           +N L+ +IL R
Sbjct: 155 LNLLLKQILPR 165

The following BLAST results are available for this feature:

BLAST of CSPI05G02430 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G02430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLN6	1.4e-31	100.00	Ribosomal_L7Ae domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G126...	[more]
A0A1S3CR39	1.7e-29	94.44	ribonuclease P protein subunit p38 isoform X6 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A1S3CS60	1.7e-29	94.44	uncharacterized protein LOC103503720 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CQU5	1.7e-29	94.44	uncharacterized protein LOC103503720 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3CS63	1.7e-29	94.44	uncharacterized protein LOC103503720 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CSPI05G02430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011654557.1	2.9e-31	100.00	ribonuclease P protein subunit p38 [Cucumis sativus] >KAE8648306.1 hypothetical ...	[more]
XP_038875290.1	1.6e-29	93.15	ribonuclease P protein subunit p38 [Benincasa hispida]	[more]
XP_008466263.1	3.5e-29	94.44	PREDICTED: uncharacterized protein LOC103503720 isoform X2 [Cucumis melo]	[more]
XP_008466271.1	3.5e-29	94.44	PREDICTED: uncharacterized protein LOC103503720 isoform X3 [Cucumis melo]	[more]
XP_008466280.1	3.5e-29	94.44	PREDICTED: ribonuclease P protein subunit p38 isoform X5 [Cucumis melo]	[more]

BLAST of CSPI05G02430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01790.1	1.9e-17	59.15	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 2..59 e-value: 1.9E-6 score: 27.5
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..73 e-value: 5.6E-14 score: 54.1
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 2..70
None	No IPR available	PANTHER	PTHR47903	OS07G0636400 PROTEIN	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G02430.1	CSPI05G02430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome