CSPI05G02390 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G02390
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 3051794 .. 3051994 (-)
RNA-Seq Expression	CSPI05G02390
Synteny	CSPI05G02390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACAATAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

mRNA sequence

ATGAACAATAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Coding sequence (CDS)

ATGAACAATAGACGATCAGATACCGTCCTAGTCTCAACCATAAACGATGCCGACCAGGGATTGGCGGATGTTGCTTTAAGGACTCCGCCAGCACCTTATGAGAAATCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAA

Protein sequence

MNNRRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA*

Homology

[Close]

BLAST of CSPI05G02390 vs. ExPASy TrEMBL
Match: A0A0A0LDF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.0e-26
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 4   RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
           RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 50  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 109

Query: 64  PAA 67
           PAA
Sbjct: 110 PAA 112

[Close]

BLAST of CSPI05G02390 vs. ExPASy TrEMBL
Match: A0A4S8JRQ3 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb01t29820 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 33 RRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 92

Query: 64 PAA 67
          PAA
Sbjct: 93 PAA 95

[Close]

BLAST of CSPI05G02390 vs. ExPASy TrEMBL
Match: A0A6A1VJU8 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G025804 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 4   RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
           RRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 47  RRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 106

Query: 64  PAA 67
           PAA
Sbjct: 107 PAA 109

[Close]

BLAST of CSPI05G02390 vs. ExPASy TrEMBL
Match: A0A4S8JRP8 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb01t29760 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 4   RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
           RRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 134 RRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 193

Query: 64  PAA 67
           PAA
Sbjct: 194 PAA 196

[Close]

BLAST of CSPI05G02390 vs. ExPASy TrEMBL
Match: A0A2N9I7Q4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48564 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.9e-25
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 4   RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
           RRSDTVLVSTINDADQGLADV  RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 231 RRSDTVLVSTINDADQGLADVTYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 290

Query: 64  PAA 67
           PAA
Sbjct: 291 PAA 293

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: KAE8652002.1 (hypothetical protein Csa_021689 [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 4   RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
           RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 50  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 109

Query: 64  PAA 67
           PAA
Sbjct: 110 PAA 112

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: KAE8652003.1 (hypothetical protein Csa_021696, partial [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 1  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 60

Query: 64 PAA 67
          PAA
Sbjct: 61 PAA 63

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: KAG6484325.1 (hypothetical protein ZIOFF_061128 [Zingiber officinale])

HSP 1 Score: 123.2 bits (308), Expect = 8.2e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 4   RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
           RRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 342 RRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 401

Query: 64  PAA 67
           PAA
Sbjct: 402 PAA 404

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: MRN07819.1 (hypothetical protein [Lactobacillus sp. 0.1XD8-4])

HSP 1 Score: 123.2 bits (308), Expect = 8.2e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 5  RRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 64

Query: 64 PAA 67
          PAA
Sbjct: 65 PAA 67

[Close]

BLAST of CSPI05G02390 vs. NCBI nr
Match: THU64758.1 (hypothetical protein C4D60_Mb01t29820 [Musa balbisiana] >THU64761.1 hypothetical protein C4D60_Mb01t29850 [Musa balbisiana])

HSP 1 Score: 123.2 bits (308), Expect = 8.2e-25
Identity = 62/63 (98.41%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 4  RRSDTVLVSTINDADQGLADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 63
          RRSDTVLVSTINDADQG ADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE
Sbjct: 33 RRSDTVLVSTINDADQGSADVALRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVE 92

Query: 64 PAA 67
          PAA
Sbjct: 93 PAA 95

The following BLAST results are available for this feature:

BLAST of CSPI05G02390 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G02390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDF7	8.0e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G512980 PE=4 SV=1	[more]
A0A4S8JRQ3	4.0e-25	98.41	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb01t29820 PE=4 SV=...	[more]
A0A6A1VJU8	4.0e-25	98.41	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR5G025804 PE=4 SV=1	[more]
A0A4S8JRP8	4.0e-25	98.41	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb01t29760 PE=4 SV=...	[more]
A0A2N9I7Q4	8.9e-25	96.83	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS48564 PE=4 SV=1	[more]

BLAST of CSPI05G02390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652002.1	1.7e-25	100.00	hypothetical protein Csa_021689 [Cucumis sativus]	[more]
KAE8652003.1	1.7e-25	100.00	hypothetical protein Csa_021696, partial [Cucumis sativus]	[more]
KAG6484325.1	8.2e-25	98.41	hypothetical protein ZIOFF_061128 [Zingiber officinale]	[more]
MRN07819.1	8.2e-25	98.41	hypothetical protein [Lactobacillus sp. 0.1XD8-4]	[more]
THU64758.1	8.2e-25	98.41	hypothetical protein C4D60_Mb01t29820 [Musa balbisiana] >THU64761.1 hypothetical...	[more]

BLAST of CSPI05G02390 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34410	INTRON-ENCODED HOMING ENDONUCLEASE, PUTATIVE-RELATED	coord: 3..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G02390.1	CSPI05G02390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0004519	endonuclease activity