CSPI05G02170 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G02170
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein SLOW GREEN 1, chloroplastic
Location	Chr5: 2894993 .. 2896536 (-)
RNA-Seq Expression	CSPI05G02170
Synteny	CSPI05G02170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAACGGCGGCGGCACCGGAGGTAGGTTTCGATAACTTGCAGAAGAGGCTTCGGAAACTTTGATTTCTGTCCCATTCCAAAATTCTTCTCTTTACTTCTTCTCGAAACTACCGTCTCCCAAACTCAACGACCTTCTACCAAATCCCTCTCACCACCTATAGCCCATAACCCATTTCTCTCTTTCTTCCATGAGCTCCACATTTGCTTACATCTCTTCACCTTCTTCTTCATCTTTTTCATCCATCTTCAATTTCAATCCATCTAATTCTAAAATGGTCTCATTCTCGAACAATCTTCTTTTTGCTGCTCCCCTTTCTCGCAGTTCCGTTTCTGTGCATCCGTTTAGGGTTAGGGCTTCCTCTGTTCCCGTTCCCGTTCCCAGGACCCACCACCCTGTTGTTCATTGTCTCCGCAACTACGCCAAAGCTGCGATTCTCATTGGTGCTGCCGCCACCATGGTTGGGAAGTTCTCGAATTTGCCTGCCAGAGCTGAATCGTCTGCGGTGGTGGCTGAGGAAGCTTCAAGAGTGGAGGAAACCACCTCCGATCATCGGATTTTTGAGGATTCAGACCAGGACGGGAGGCAATCCTCGCCGTTAAATGACTTTCTCGAATCGAATTCTGAGGCTGTCGAGGCCCTCAAATCTCTCCTACAGCAAAAGCTTGAAAATGGTGAGGATGAAGAAGCGCTAAAAATTTTGAAGCAATTGGTATCTGCTCTGCCGTCAGTGACTGAGTGGAAATTTCTGATGGCTAGGTTGCTTGGGGAAATGGGCAAAACGGAACATGCAAGAGAAGTTTTTGAAGAGATTTTGGCTGTCAATCCATTGTCTTTCGAAGCATTGTTTGAAAACGCATTGTTAATGGATCGTTGTGGGGAAGGGGAAGCTGTGATTCGGCGATTGGAAGAAGCTTTGAGAATCGCTGAGAACGAAAACAAAGCTAAGGAAGCCAGAGATGTGAAGTTGATAATGGCTCAAATACAATTCTTGCAGAAGAATGTTGAGGAAGCTTTGAAAAGTTACAAAGAATTGGCGAAGGAAGATCCAAGTGACTTTAGGCCTTACTTCTGTCAAGGAATGATCTACAGCTTGCTTGATAAGAATATAGAGGCCAAACAGCAATTTGCCAAATACAGGGAGCTCTCACCAAAGAAATTTGAGGTTGATGGGTATCTAAGAACTCCATTGTCAAGGATGAAAATCTTTGGATCAGATGAAAACTAAAGTTTTGATTGAGTGTACCTTCTCTTCCTCTTCACAATCATCAGATAAGAGGGCTCTGAGTAAGTAAACTTAAAGTTTTGCTGATTTTTGTTATCTTAGTCTTACTTTGATCTGCCTTCTGCATGTAGTTCATTTGCGGGATAGAATCTTTAAATAACTTTTCCTAATATGCATTTGTTTTGATGACATTAGACTACTCATAAAATTAGTTGGAAACTTGGAGTAAATGCAGATAGACTGTTTGTAGCTTTATTATGTTGCAATTTGACTTGTGTACTTCAAATCAATTAATAATATCCATAATACATTTGTAGTGC

mRNA sequence

TGCAACGGCGGCGGCACCGGAGGTAGGTTTCGATAACTTGCAGAAGAGGCTTCGGAAACTTTGATTTCTGTCCCATTCCAAAATTCTTCTCTTTACTTCTTCTCGAAACTACCGTCTCCCAAACTCAACGACCTTCTACCAAATCCCTCTCACCACCTATAGCCCATAACCCATTTCTCTCTTTCTTCCATGAGCTCCACATTTGCTTACATCTCTTCACCTTCTTCTTCATCTTTTTCATCCATCTTCAATTTCAATCCATCTAATTCTAAAATGGTCTCATTCTCGAACAATCTTCTTTTTGCTGCTCCCCTTTCTCGCAGTTCCGTTTCTGTGCATCCGTTTAGGGTTAGGGCTTCCTCTGTTCCCGTTCCCGTTCCCAGGACCCACCACCCTGTTGTTCATTGTCTCCGCAACTACGCCAAAGCTGCGATTCTCATTGGTGCTGCCGCCACCATGGTTGGGAAGTTCTCGAATTTGCCTGCCAGAGCTGAATCGTCTGCGGTGGTGGCTGAGGAAGCTTCAAGAGTGGAGGAAACCACCTCCGATCATCGGATTTTTGAGGATTCAGACCAGGACGGGAGGCAATCCTCGCCGTTAAATGACTTTCTCGAATCGAATTCTGAGGCTGTCGAGGCCCTCAAATCTCTCCTACAGCAAAAGCTTGAAAATGGTGAGGATGAAGAAGCGCTAAAAATTTTGAAGCAATTGGTATCTGCTCTGCCGTCAGTGACTGAGTGGAAATTTCTGATGGCTAGGTTGCTTGGGGAAATGGGCAAAACGGAACATGCAAGAGAAGTTTTTGAAGAGATTTTGGCTGTCAATCCATTGTCTTTCGAAGCATTGTTTGAAAACGCATTGTTAATGGATCGTTGTGGGGAAGGGGAAGCTGTGATTCGGCGATTGGAAGAAGCTTTGAGAATCGCTGAGAACGAAAACAAAGCTAAGGAAGCCAGAGATGTGAAGTTGATAATGGCTCAAATACAATTCTTGCAGAAGAATGTTGAGGAAGCTTTGAAAAGTTACAAAGAATTGGCGAAGGAAGATCCAAGTGACTTTAGGCCTTACTTCTGTCAAGGAATGATCTACAGCTTGCTTGATAAGAATATAGAGGCCAAACAGCAATTTGCCAAATACAGGGAGCTCTCACCAAAGAAATTTGAGGTTGATGGGTATCTAAGAACTCCATTGTCAAGGATGAAAATCTTTGGATCAGATGAAAACTAAAGTTTTGATTGAGTGTACCTTCTCTTCCTCTTCACAATCATCAGATAAGAGGGCTCTGAGTAAGTAAACTTAAAGTTTTGCTGATTTTTGTTATCTTAGTCTTACTTTGATCTGCCTTCTGCATGTAGTTCATTTGCGGGATAGAATCTTTAAATAACTTTTCCTAATATGCATTTGTTTTGATGACATTAGACTACTCATAAAATTAGTTGGAAACTTGGAGTAAATGCAGATAGACTGTTTGTAGCTTTATTATGTTGCAATTTGACTTGTGTACTTCAAATCAATTAATAATATCCATAATACATTTGTAGTGC

Coding sequence (CDS)

ATGAGCTCCACATTTGCTTACATCTCTTCACCTTCTTCTTCATCTTTTTCATCCATCTTCAATTTCAATCCATCTAATTCTAAAATGGTCTCATTCTCGAACAATCTTCTTTTTGCTGCTCCCCTTTCTCGCAGTTCCGTTTCTGTGCATCCGTTTAGGGTTAGGGCTTCCTCTGTTCCCGTTCCCGTTCCCAGGACCCACCACCCTGTTGTTCATTGTCTCCGCAACTACGCCAAAGCTGCGATTCTCATTGGTGCTGCCGCCACCATGGTTGGGAAGTTCTCGAATTTGCCTGCCAGAGCTGAATCGTCTGCGGTGGTGGCTGAGGAAGCTTCAAGAGTGGAGGAAACCACCTCCGATCATCGGATTTTTGAGGATTCAGACCAGGACGGGAGGCAATCCTCGCCGTTAAATGACTTTCTCGAATCGAATTCTGAGGCTGTCGAGGCCCTCAAATCTCTCCTACAGCAAAAGCTTGAAAATGGTGAGGATGAAGAAGCGCTAAAAATTTTGAAGCAATTGGTATCTGCTCTGCCGTCAGTGACTGAGTGGAAATTTCTGATGGCTAGGTTGCTTGGGGAAATGGGCAAAACGGAACATGCAAGAGAAGTTTTTGAAGAGATTTTGGCTGTCAATCCATTGTCTTTCGAAGCATTGTTTGAAAACGCATTGTTAATGGATCGTTGTGGGGAAGGGGAAGCTGTGATTCGGCGATTGGAAGAAGCTTTGAGAATCGCTGAGAACGAAAACAAAGCTAAGGAAGCCAGAGATGTGAAGTTGATAATGGCTCAAATACAATTCTTGCAGAAGAATGTTGAGGAAGCTTTGAAAAGTTACAAAGAATTGGCGAAGGAAGATCCAAGTGACTTTAGGCCTTACTTCTGTCAAGGAATGATCTACAGCTTGCTTGATAAGAATATAGAGGCCAAACAGCAATTTGCCAAATACAGGGAGCTCTCACCAAAGAAATTTGAGGTTGATGGGTATCTAAGAACTCCATTGTCAAGGATGAAAATCTTTGGATCAGATGAAAACTAA

Protein sequence

MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVPVPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLEEALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIYSLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN*

Homology

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BLAST of CSPI05G02170 vs. ExPASy Swiss-Prot
Match: Q9LS48 (protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 2.6e-93
Identity = 181/270 (67.04%), Postives = 219/270 (81.11%), Query Frame = 0


Query: 75  RNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQS 134
           +++AK+AILIGAA +M GKFS LP +AES             TT +    E  ++   + 
Sbjct: 56  KSFAKSAILIGAAVSMTGKFSTLPVKAESPV-----------TTIEKTYEEVKEEKLSEI 115

Query: 135 SPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGE 194
           +PL++ L+S  EAVE L+SLLQQKLE GEDEEALK+L++LV+A P  TEWKFLMARLLGE
Sbjct: 116 TPLSELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKFLMARLLGE 175

Query: 195 MGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLEEALRIAENENKAKE 254
           MG+ E+AR++FEEIL  NPLSFEALFENALLMDR GEG AV++RLE+AL +AE E   KE
Sbjct: 176 MGRPENARQMFEEILQRNPLSFEALFENALLMDRSGEGNAVLQRLEDALAVAEAEYLVKE 235

Query: 255 ARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIYSLLDKNIEAKQQFA 314
           ARDV+LI+AQI FLQKNV+EALKSY++L KEDP DFRPYFC+GMIYSLLDKN+EAK+QFA
Sbjct: 236 ARDVRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNVEAKEQFA 295

Query: 315 KYRELSPKKFEVDGYLRTPLSRMKIFGSDE 345
           KYRELSPKKFEV+GYLRTPLS+MK+FG  E
Sbjct: 296 KYRELSPKKFEVEGYLRTPLSKMKLFGGSE 314

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BLAST of CSPI05G02170 vs. ExPASy TrEMBL
Match: A0A0A0KMW6 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G114590 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 8.3e-167
Identity = 315/317 (99.37%), Postives = 315/317 (99.37%), Query Frame = 0


Query: 29  MVSFSNNLLFAAPLSRSSVSVHPFRVRASSVPVPVPRTHHPVVHCLRNYAKAAILIGAAA 88
           MVSFSNNL FAAPLSRSSVSVHPFRVRASSVPVPVPRTHHPVVHCLRNYAKAAILIGAAA
Sbjct: 1   MVSFSNNLRFAAPLSRSSVSVHPFRVRASSVPVPVPRTHHPVVHCLRNYAKAAILIGAAA 60

Query: 89  TMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQSSPLNDFLESNSEAV 148
           TMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQSSPLNDFLESNSEAV
Sbjct: 61  TMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQSSPLNDFLESNSEAV 120

Query: 149 EALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGEMGKTEHAREVFEEI 208
           EALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGEMGKTEHAREVFEEI
Sbjct: 121 EALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGEMGKTEHAREVFEEI 180

Query: 209 LAVNPLSFEALFENALLMDRCGEGEAVIRRLEEALRIAENENKAKEARDVKLIMAQIQFL 268
           LAVNPLSFEALFENALLMDRCGEGEAVIRRLEEALRIAENENKAKEARDVKLIMAQIQFL
Sbjct: 181 LAVNPLSFEALFENALLMDRCGEGEAVIRRLEEALRIAENENKAKEARDVKLIMAQIQFL 240

Query: 269 QKNVEEALKSYKELAKEDPSDFRPYFCQGMIYSLLDKNIEAKQQFAKYRELSPKKFEVDG 328
           QKNVEEALKSYKEL KEDPSDFRPYFCQGMIYSLLDKNIEAKQQFAKYRELSPKKFEVDG
Sbjct: 241 QKNVEEALKSYKELVKEDPSDFRPYFCQGMIYSLLDKNIEAKQQFAKYRELSPKKFEVDG 300

Query: 329 YLRTPLSRMKIFGSDEN 346
           YLRTPLSRMKIFGSDEN
Sbjct: 301 YLRTPLSRMKIFGSDEN 317

[Close]

BLAST of CSPI05G02170 vs. ExPASy TrEMBL
Match: A0A5D3BG83 (Protein SLOW GREEN 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00680 PE=4 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 2.0e-165
Identity = 320/345 (92.75%), Postives = 329/345 (95.36%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MSSTFA +SSPSSSS SSIFNFNPSNSKMVSFSNNL FAAPLSR S+SVHPFRVRASS  
Sbjct: 1   MSSTFASMSSPSSSSLSSIFNFNPSNSKMVSFSNNLRFAAPLSRHSISVHPFRVRASS-- 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           VPVPRTHHPVV CLRNYAKAAILIGAAATMVGKFSNLPARAE+ AVVAEEASR+EET+ D
Sbjct: 61  VPVPRTHHPVVQCLRNYAKAAILIGAAATMVGKFSNLPARAETPAVVAEEASRMEETSPD 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
            RI EDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS
Sbjct: 121 KRIVEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFLMARLL EMGKTE+AREVFEEILAV+PLS+EALFENALLMDRCGEGEAV+RRLE
Sbjct: 181 VTEWKFLMARLLAEMGKTENAREVFEEILAVDPLSYEALFENALLMDRCGEGEAVLRRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           EALRIAE E KAKEARDVKLIMAQIQFLQKNVEEALKSYKEL KEDPSDFRPYFCQGMIY
Sbjct: 241 EALRIAEKERKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 346
           SLLDKN EAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 SLLDKNTEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 343

[Close]

BLAST of CSPI05G02170 vs. ExPASy TrEMBL
Match: A0A1S3CRV7 (protein SLOW GREEN 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504062 PE=4 SV=1)

HSP 1 Score: 591.7 bits (1524), Expect = 2.0e-165
Identity = 320/345 (92.75%), Postives = 328/345 (95.07%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MSSTFA +SSPSSSS SSIFNFNPSNSKMVSFSNNL FAAPLSR S+SVHPFRVRASS  
Sbjct: 1   MSSTFASMSSPSSSSLSSIFNFNPSNSKMVSFSNNLRFAAPLSRHSISVHPFRVRASS-- 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           VPVPRTHHPVV CLRNYAKAAILIGAAATMVGKFSNLPARAE+ A VAEEASR+EETT D
Sbjct: 61  VPVPRTHHPVVQCLRNYAKAAILIGAAATMVGKFSNLPARAETPAAVAEEASRMEETTPD 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
            RI EDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS
Sbjct: 121 KRIVEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFLMARLL EMGKTE+AREVFEEILAV+PLS+EALFENALLMDRCGEGEAV+RRLE
Sbjct: 181 VTEWKFLMARLLAEMGKTENAREVFEEILAVDPLSYEALFENALLMDRCGEGEAVLRRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           EALRIAE E KAKEARDVKLIMAQIQFLQKNVEEALKSYKEL KEDPSDFRPYFCQGMIY
Sbjct: 241 EALRIAEKERKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 346
           SLLDKN EAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 SLLDKNTEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 343

[Close]

BLAST of CSPI05G02170 vs. ExPASy TrEMBL
Match: A0A6J1CXB6 (protein SLOW GREEN 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015681 PE=4 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.9e-148
Identity = 294/344 (85.47%), Postives = 315/344 (91.57%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MSSTFA +SSPSSSS SSIF+FN S  K VS   NL FAAPLSR+SV V  FRVRASS P
Sbjct: 1   MSSTFAAMSSPSSSSLSSIFHFNASKPKPVS-PPNLRFAAPLSRNSVYVQRFRVRASSAP 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           +P    +HPVV CLRNYA+AAILIGAAATMVGKFS+LPARAES A VAEEASR+EE   D
Sbjct: 61  LPDASRNHPVVQCLRNYARAAILIGAAATMVGKFSHLPARAESPAAVAEEASRMEE---D 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
            ++ EDSD+D +QSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSA PS
Sbjct: 121 RQVVEDSDRDRQQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSAQPS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFLMARLLGEMGKTE+AR+VFEEILAVNPLSFEALFENALLMDRCGEGEAV+RRLE
Sbjct: 181 VTEWKFLMARLLGEMGKTENARDVFEEILAVNPLSFEALFENALLMDRCGEGEAVLRRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           EALRIAE+ENKAKEARDVKLIMAQIQFLQKNVEEALKSYKEL KEDP+DFRPYFCQGMIY
Sbjct: 241 EALRIAEDENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPNDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDE 345
           SLLDKN+EA++QF+KYRELSPKKFEVDGYLRTPLSRMKIFGSDE
Sbjct: 301 SLLDKNVEAREQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDE 340

[Close]

BLAST of CSPI05G02170 vs. ExPASy TrEMBL
Match: A0A6J1GYL7 (protein SLOW GREEN 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111458452 PE=4 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 3.3e-139
Identity = 287/345 (83.19%), Postives = 303/345 (87.83%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MS TFA +SSPSSSS SSI  F  S SK V    NL FAAP+SR+SVSVH FRVRASSVP
Sbjct: 1   MSFTFASMSSPSSSSLSSI--FISSKSKPVP-PPNLRFAAPISRTSVSVHRFRVRASSVP 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           V     +HPVV C +NYA+AAILIGAAATMVGKFS+LPARAES  VV EEASR+EE   +
Sbjct: 61  V---SRNHPVVQCFKNYARAAILIGAAATMVGKFSHLPARAESPVVVEEEASRIEE---E 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
            RI EDSDQDG+QSSPLNDFLESNSEAVEALKSLLQQKLEN EDEEALKIL QLVSA  S
Sbjct: 121 QRIVEDSDQDGQQSSPLNDFLESNSEAVEALKSLLQQKLENSEDEEALKILNQLVSAQSS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFL ARLLGEMGKTE+AREVFEEILA NPLSFEALFENALLMDRCGEGEAV+ RLE
Sbjct: 181 VTEWKFLKARLLGEMGKTENAREVFEEILAENPLSFEALFENALLMDRCGEGEAVLLRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           +ALRIAENE KAKEARDV+LIMAQIQFLQKNVE AL SYKEL KEDPSDFRPYFCQGMIY
Sbjct: 241 QALRIAENEKKAKEARDVRLIMAQIQFLQKNVEGALTSYKELIKEDPSDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 346
           SLLDKN EA+QQF+KYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 SLLDKNEEARQQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 336

[Close]

BLAST of CSPI05G02170 vs. NCBI nr
Match: XP_004149472.1 (protein SLOW GREEN 1, chloroplastic [Cucumis sativus] >KAE8648295.1 hypothetical protein Csa_017797 [Cucumis sativus])

HSP 1 Score: 638.6 bits (1646), Expect = 3.0e-179
Identity = 342/345 (99.13%), Postives = 342/345 (99.13%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MSSTFA ISSPSSSSFSSIFNFNPSNSKMVSFSNNL FAAPLSRSSVSVHPFRVRASSVP
Sbjct: 1   MSSTFASISSPSSSSFSSIFNFNPSNSKMVSFSNNLRFAAPLSRSSVSVHPFRVRASSVP 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD
Sbjct: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
           HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS
Sbjct: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE
Sbjct: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKEL KEDPSDFRPYFCQGMIY
Sbjct: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 346
           SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 345

[Close]

BLAST of CSPI05G02170 vs. NCBI nr
Match: TYJ97188.1 (protein SLOW GREEN 1 [Cucumis melo var. makuwa])

HSP 1 Score: 591.7 bits (1524), Expect = 4.2e-165
Identity = 320/345 (92.75%), Postives = 329/345 (95.36%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MSSTFA +SSPSSSS SSIFNFNPSNSKMVSFSNNL FAAPLSR S+SVHPFRVRASS  
Sbjct: 1   MSSTFASMSSPSSSSLSSIFNFNPSNSKMVSFSNNLRFAAPLSRHSISVHPFRVRASS-- 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           VPVPRTHHPVV CLRNYAKAAILIGAAATMVGKFSNLPARAE+ AVVAEEASR+EET+ D
Sbjct: 61  VPVPRTHHPVVQCLRNYAKAAILIGAAATMVGKFSNLPARAETPAVVAEEASRMEETSPD 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
            RI EDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS
Sbjct: 121 KRIVEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFLMARLL EMGKTE+AREVFEEILAV+PLS+EALFENALLMDRCGEGEAV+RRLE
Sbjct: 181 VTEWKFLMARLLAEMGKTENAREVFEEILAVDPLSYEALFENALLMDRCGEGEAVLRRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           EALRIAE E KAKEARDVKLIMAQIQFLQKNVEEALKSYKEL KEDPSDFRPYFCQGMIY
Sbjct: 241 EALRIAEKERKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 346
           SLLDKN EAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 SLLDKNTEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 343

[Close]

BLAST of CSPI05G02170 vs. NCBI nr
Match: XP_008466719.1 (PREDICTED: protein SLOW GREEN 1, chloroplastic [Cucumis melo])

HSP 1 Score: 591.7 bits (1524), Expect = 4.2e-165
Identity = 320/345 (92.75%), Postives = 328/345 (95.07%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MSSTFA +SSPSSSS SSIFNFNPSNSKMVSFSNNL FAAPLSR S+SVHPFRVRASS  
Sbjct: 1   MSSTFASMSSPSSSSLSSIFNFNPSNSKMVSFSNNLRFAAPLSRHSISVHPFRVRASS-- 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           VPVPRTHHPVV CLRNYAKAAILIGAAATMVGKFSNLPARAE+ A VAEEASR+EETT D
Sbjct: 61  VPVPRTHHPVVQCLRNYAKAAILIGAAATMVGKFSNLPARAETPAAVAEEASRMEETTPD 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
            RI EDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS
Sbjct: 121 KRIVEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFLMARLL EMGKTE+AREVFEEILAV+PLS+EALFENALLMDRCGEGEAV+RRLE
Sbjct: 181 VTEWKFLMARLLAEMGKTENAREVFEEILAVDPLSYEALFENALLMDRCGEGEAVLRRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           EALRIAE E KAKEARDVKLIMAQIQFLQKNVEEALKSYKEL KEDPSDFRPYFCQGMIY
Sbjct: 241 EALRIAEKERKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 346
           SLLDKN EAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 SLLDKNTEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 343

[Close]

BLAST of CSPI05G02170 vs. NCBI nr
Match: XP_038876236.1 (protein SLOW GREEN 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 565.1 bits (1455), Expect = 4.2e-157
Identity = 309/345 (89.57%), Postives = 322/345 (93.33%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MSSTFA ISSP+SSS SSIFNFN S SKMVS  NNL FAAPLSR+SVSVHPFRVRASSVP
Sbjct: 1   MSSTFASISSPTSSSLSSIFNFNASKSKMVSLPNNLRFAAPLSRNSVSVHPFRVRASSVP 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           V     +HPVV CLRNYA+AAILIGAAATMVGKFS+LPARAES A VAEEASR+EE   D
Sbjct: 61  V---SRNHPVVQCLRNYARAAILIGAAATMVGKFSHLPARAESPAAVAEEASRMEE---D 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
            RI EDSDQ+G+QSSPLNDFLESNSEA+EALKSLLQQKLENGEDEEALKILKQLVSA PS
Sbjct: 121 QRIAEDSDQEGKQSSPLNDFLESNSEAIEALKSLLQQKLENGEDEEALKILKQLVSAQPS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFLMARLLGEMGKTE+AREVFEEILAVNPLSFEALFENALLMDRCGEGEAV+RRLE
Sbjct: 181 VTEWKFLMARLLGEMGKTENAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVLRRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           EAL+IAENENK KEARDVKLIMAQIQFLQKNVEEALKSYKEL KEDPSDFRPYFCQGMIY
Sbjct: 241 EALKIAENENKVKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPSDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 346
           SLLDKN+EAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN
Sbjct: 301 SLLDKNMEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDEN 339

[Close]

BLAST of CSPI05G02170 vs. NCBI nr
Match: XP_022146470.1 (protein SLOW GREEN 1, chloroplastic [Momordica charantia])

HSP 1 Score: 534.3 bits (1375), Expect = 8.0e-148
Identity = 294/344 (85.47%), Postives = 315/344 (91.57%), Query Frame = 0


Query: 1   MSSTFAYISSPSSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVP 60
           MSSTFA +SSPSSSS SSIF+FN S  K VS   NL FAAPLSR+SV V  FRVRASS P
Sbjct: 1   MSSTFAAMSSPSSSSLSSIFHFNASKPKPVS-PPNLRFAAPLSRNSVYVQRFRVRASSAP 60

Query: 61  VPVPRTHHPVVHCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSD 120
           +P    +HPVV CLRNYA+AAILIGAAATMVGKFS+LPARAES A VAEEASR+EE   D
Sbjct: 61  LPDASRNHPVVQCLRNYARAAILIGAAATMVGKFSHLPARAESPAAVAEEASRMEE---D 120

Query: 121 HRIFEDSDQDGRQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPS 180
            ++ EDSD+D +QSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSA PS
Sbjct: 121 RQVVEDSDRDRQQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSAQPS 180

Query: 181 VTEWKFLMARLLGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLE 240
           VTEWKFLMARLLGEMGKTE+AR+VFEEILAVNPLSFEALFENALLMDRCGEGEAV+RRLE
Sbjct: 181 VTEWKFLMARLLGEMGKTENARDVFEEILAVNPLSFEALFENALLMDRCGEGEAVLRRLE 240

Query: 241 EALRIAENENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIY 300
           EALRIAE+ENKAKEARDVKLIMAQIQFLQKNVEEALKSYKEL KEDP+DFRPYFCQGMIY
Sbjct: 241 EALRIAEDENKAKEARDVKLIMAQIQFLQKNVEEALKSYKELVKEDPNDFRPYFCQGMIY 300

Query: 301 SLLDKNIEAKQQFAKYRELSPKKFEVDGYLRTPLSRMKIFGSDE 345
           SLLDKN+EA++QF+KYRELSPKKFEVDGYLRTPLSRMKIFGSDE
Sbjct: 301 SLLDKNVEAREQFSKYRELSPKKFEVDGYLRTPLSRMKIFGSDE 340

[Close]

BLAST of CSPI05G02170 vs. TAIR 10
Match: AT3G18420.1 (Protein prenylyltransferase superfamily protein )

HSP 1 Score: 343.6 bits (880), Expect = 1.9e-94
Identity = 181/270 (67.04%), Postives = 219/270 (81.11%), Query Frame = 0


Query: 75  RNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQS 134
           +++AK+AILIGAA +M GKFS LP +AES             TT +    E  ++   + 
Sbjct: 56  KSFAKSAILIGAAVSMTGKFSTLPVKAESPV-----------TTIEKTYEEVKEEKLSEI 115

Query: 135 SPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGE 194
           +PL++ L+S  EAVE L+SLLQQKLE GEDEEALK+L++LV+A P  TEWKFLMARLLGE
Sbjct: 116 TPLSELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEETEWKFLMARLLGE 175

Query: 195 MGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLEEALRIAENENKAKE 254
           MG+ E+AR++FEEIL  NPLSFEALFENALLMDR GEG AV++RLE+AL +AE E   KE
Sbjct: 176 MGRPENARQMFEEILQRNPLSFEALFENALLMDRSGEGNAVLQRLEDALAVAEAEYLVKE 235

Query: 255 ARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIYSLLDKNIEAKQQFA 314
           ARDV+LI+AQI FLQKNV+EALKSY++L KEDP DFRPYFC+GMIYSLLDKN+EAK+QFA
Sbjct: 236 ARDVRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYSLLDKNVEAKEQFA 295

Query: 315 KYRELSPKKFEVDGYLRTPLSRMKIFGSDE 345
           KYRELSPKKFEV+GYLRTPLS+MK+FG  E
Sbjct: 296 KYRELSPKKFEVEGYLRTPLSKMKLFGGSE 314

[Close]

BLAST of CSPI05G02170 vs. TAIR 10
Match: AT4G39470.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-31
Identity = 83/252 (32.94%), Postives = 141/252 (55.95%), Query Frame = 0


Query: 79  KAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQSSPLN 138
           KAAIL+  +   +G  S+ PA A  +A V  +A        D ++FE             
Sbjct: 82  KAAILLVGSFVFLGFCSSKPALALPTATVVSQAE-----LEDEKMFE------------- 141

Query: 139 DFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGEMGKT 198
             LE+  E +EA+K+++ +K+  G++E+A+K +++L+   P   EWK L A     MG+ 
Sbjct: 142 KLLENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKLMKLEPHEVEWKLLEALCYETMGEL 201

Query: 199 EHAREVFEEILAVNPLSFEALFENALLMDRCGEGEAVIRRLEEALRIAENENKAKEARDV 258
             A+ ++++IL   PL   AL   A++M +  +  +V   L EA+ +A   N+  E R++
Sbjct: 202 SKAKRLYKDILKEQPLLIRALHGLAMVMHKTHD-TSVFDMLIEAMEVARQGNRVTEERNI 261

Query: 259 KLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIYSLLDKNIEAKQQFAKYRE 318
           ++++ Q+  ++   EE LK ++++  ++P DFRPY CQG++YSL+DK  EA QQF  Y  
Sbjct: 262 QVLIGQMHIVEGQFEEGLKIFQQMVNDNPRDFRPYLCQGIVYSLMDKKEEAAQQFEIYWS 314

Query: 319 LSPKKFEVDGYL 331
           L P +F   G+L
Sbjct: 322 LVPGEFPQKGFL 314

[Close]

BLAST of CSPI05G02170 vs. TAIR 10
Match: AT2G37400.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 132.1 bits (331), Expect = 8.5e-31
Identity = 104/330 (31.52%), Postives = 169/330 (51.21%), Query Frame = 0


Query: 12  SSSSFSSIFNFNPSNSKMVSFSNNLLFAAPLSRSSVSVHPFRVRASSVPVPVPRTHHPVV 71
           S + FSS F   PS+  + S          L RS+ S     ++ASS      ++    +
Sbjct: 17  SFTHFSSSFPKKPSSFSLRS----------LPRSTSSFKCISIKASS-----SKSQDSKL 76

Query: 72  HCLRNYAKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDG 131
             L+  +       AAA  +      P+ A ++ V A       + ++ +  FE+ ++  
Sbjct: 77  SILK--STCVSFTAAAALFLVNLQLKPSPAIAAPVAATPLMESLKQSNGNVSFEEEERS- 136

Query: 132 RQSSPLNDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARL 191
                L ++L S+ + VEAL+SL++ ++++ +  EA++++ +L+   P   EW  L A +
Sbjct: 137 -----LEEYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIELEPEEKEWPMLKANI 196

Query: 192 LGEMGKTEHAREVFEEILAVNPLSFEALFENALLMDRCGEG-EAVIRRLEEALRIAENEN 251
               G  E A+  FEEIL  +PL  EA     +     G+   AV +R+EEA+   + E 
Sbjct: 197 FSYSGDLESAKTGFEEILVKDPLRVEAYHGLVMAYSDSGDDLNAVEKRIEEAMVRCKKEK 256

Query: 252 KAKEARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIYSLLDKNIEAK 311
             K+ RD KL++AQI+ ++    EALK Y+EL KE+P DFRPY CQG+IY++L K  EA+
Sbjct: 257 NRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYLCQGIIYTVLKKENEAE 316

Query: 312 QQFAKYRELSPKKFEVDGYLRTPLSRMKIF 341
           +QF K+R L PK      Y    +   K+F
Sbjct: 317 KQFEKFRRLVPKNHPYREYFMDNMVASKLF 323

[Close]

BLAST of CSPI05G02170 vs. TAIR 10
Match: AT3G53560.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-28
Identity = 102/326 (31.29%), Postives = 171/326 (52.45%), Query Frame = 0


Query: 20  FNFNPSNSKMVSFSNNLLFAA--PLSRSSVSVHPFRVRASSVPVPVPRTHHPVVHCLRNY 79
           F+ + +++   +F  NL  ++  P+S    S+    ++ASS       T  P     R +
Sbjct: 14  FHLSFTHTSSSTFPKNLFKSSIQPIS----SLKSASIKASSSKFQNSITPLPKSTPFRLF 73

Query: 80  AKAAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQSSPL 139
               I +  AA ++   +NL    +S A+ A  A      + ++   E+ ++       L
Sbjct: 74  KSTCITLTTAAALL--LANL--HLKSPAIAAPIAPPPSVESKENVTLEEEER------AL 133

Query: 140 NDFLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGEMGK 199
           ++ L ++   V+AL+SL++ K+++ +  EA++++ +L+   P   EW  L A +    G 
Sbjct: 134 DEHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLIKLEPEEKEWPVLKANIFTYSGD 193

Query: 200 TEHAREVFEEILAVNPLSFEALFENALLMDRCGEG---EAVIRRLEEALRIAENENKAKE 259
            + A+  FEEILA +PL  EA   + LLM     G   + V  R+EEA+   + EN   +
Sbjct: 194 LDLAKTGFEEILAKDPLRVEAY--HGLLMAYSDAGLDLKEVESRIEEAMLKCKKENNQND 253

Query: 260 ARDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIYSLLDKNIEAKQQFA 319
            RD KL++AQI+ ++    EALK Y+EL KE+P DFRPY CQG+IY+LL K  +A++QF 
Sbjct: 254 FRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGIIYTLLKKKDKAEEQFD 313

Query: 320 KYRELSPKKFEVDGYLRTPLSRMKIF 341
            +R+L PK      Y    +   K+F
Sbjct: 314 NFRKLVPKNHPYREYFMDNMIATKLF 323

[Close]

BLAST of CSPI05G02170 vs. TAIR 10
Match: AT5G02590.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 6.8e-28
Identity = 91/270 (33.70%), Postives = 145/270 (53.70%), Query Frame = 0


Query: 80  AAILIGAAATMVGKFSNLPARAESSAVVAEEASRVEETTSDHRIFEDSDQDGRQSSPLND 139
           AA L+ A+  +    S  P  A +        S   + TSD        ++  + + L  
Sbjct: 67  AAALLSASLHL----STKPVTAATLVSPPPPPSTAADLTSDQ--ISSRPKEEEEEAALEK 126

Query: 140 FLESNSEAVEALKSLLQQKLENGEDEEALKILKQLVSALPSVTEWKFLMARLLGEMGKTE 199
            L  N   VEAL+SL++ K +    + AL+IL +L+   P   EW+ L A++    G  +
Sbjct: 127 HLTKNPNDVEALQSLMKIKFQTKNIDHALEILNRLIEIQPEEQEWRILKAQVQTYGGDFD 186

Query: 200 HAREVFEEILAVNPLSFEALFENALLMDRCGEGEA----VIRRLEEALRIAENENKAKEA 259
            A + FEE+L+ +P   EA   + L+M    E E+    +  R+ EA+   + ENK K+ 
Sbjct: 187 SATKGFEEVLSKDPFRVEAY--HGLVM-AYSESESKLSEIESRINEAIEKCKKENK-KDF 246

Query: 260 RDVKLIMAQIQFLQKNVEEALKSYKELAKEDPSDFRPYFCQGMIYSLLDKNIEAKQQFAK 319
           RD  L++AQI+ ++ N  EAL+ Y+EL K++P DFRPY CQG+IY+L+ K  EA++QFA+
Sbjct: 247 RDFMLLIAQIRVIKGNPIEALRVYQELVKDEPKDFRPYLCQGLIYTLMKKKDEAEKQFAE 306

Query: 320 YRELSPKKFEVDGYL-RTPLSRMKIFGSDE 345
           +R L P+      YL    L+  K+F  ++
Sbjct: 307 FRRLVPENHPYKEYLDANVLNTNKLFAKNQ 326

The following BLAST results are available for this feature:

BLAST of CSPI05G02170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS48	2.6e-93	67.04	protein SLOW GREEN 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SG1 PE=1 ...	[more]

BLAST of CSPI05G02170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMW6	8.3e-167	99.37	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G114590 ...	[more]
A0A5D3BG83	2.0e-165	92.75	Protein SLOW GREEN 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174...	[more]
A0A1S3CRV7	2.0e-165	92.75	protein SLOW GREEN 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103504062 PE=4...	[more]
A0A6J1CXB6	3.9e-148	85.47	protein SLOW GREEN 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110156...	[more]
A0A6J1GYL7	3.3e-139	83.19	protein SLOW GREEN 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC11145845...	[more]

BLAST of CSPI05G02170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149472.1	3.0e-179	99.13	protein SLOW GREEN 1, chloroplastic [Cucumis sativus] >KAE8648295.1 hypothetical...	[more]
TYJ97188.1	4.2e-165	92.75	protein SLOW GREEN 1 [Cucumis melo var. makuwa]	[more]
XP_008466719.1	4.2e-165	92.75	PREDICTED: protein SLOW GREEN 1, chloroplastic [Cucumis melo]	[more]
XP_038876236.1	4.2e-157	89.57	protein SLOW GREEN 1, chloroplastic [Benincasa hispida]	[more]
XP_022146470.1	8.0e-148	85.47	protein SLOW GREEN 1, chloroplastic [Momordica charantia]	[more]

BLAST of CSPI05G02170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18420.1	1.9e-94	67.04	Protein prenylyltransferase superfamily protein	[more]
AT4G39470.1	1.0e-31	32.94	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G37400.1	8.5e-31	31.52	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53560.1	1.0e-28	31.29	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G02590.1	6.8e-28	33.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 145..165
None	No IPR available	COILS	Coil	Coil	coord: 229..256
None	No IPR available	COILS	Coil	Coil	coord: 265..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..139
None	No IPR available	PANTHER	PTHR26312	TETRATRICOPEPTIDE REPEAT PROTEIN 5	coord: 90..344
None	No IPR available	PANTHER	PTHR26312:SF138	PROTEIN SLOW GREEN 1, CHLOROPLASTIC	coord: 90..344
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 256..289 e-value: 11.0 score: 14.5 coord: 182..215 e-value: 60.0 score: 8.1 coord: 290..323 e-value: 160.0 score: 4.4
IPR019734	Tetratricopeptide repeat	PFAM	PF13174	TPR_6	coord: 260..288 e-value: 0.1 score: 13.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 75..257 e-value: 5.4E-14 score: 54.1
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 258..331 e-value: 1.2E-8 score: 36.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 142..323

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G02170.1	CSPI05G02170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
molecular_function	GO:0005515	protein binding