CSPI05G01850 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G01850
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrotransposon protein
Location	Chr5: 2508282 .. 2508596 (-)
RNA-Seq Expression	CSPI05G01850
Synteny	CSPI05G01850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAACCATTTCCTTATTTCTATGACTTGAAAATTGTGTTTGGAAGAGATAGGGCTACTAGTGGTAGATGTAAGACACCCATTGAAATGGGCTTACAAATTGCAAAAGATACTGAGGAAGATGACATGAACATTAATCTCGAAGATTTAGATATTTCAAATCCACATGGACTCGAGCGACCATCGTGGATGGATCCACTCCAACAAGTATGTCACATGATGTAGGGTCATCTATGCAAAGTAAGAAAAGGCGATCATATTCAGGTGACCTCATGGACACATTTCATGTAGGTTTGCGAGAAGCTTCCATGA

mRNA sequence

ATGAGCAAACCATTTCCTTATTTCTATGACTTGAAAATTGTGTTTGGAAGAGATAGGGCTACTAGTGGTAGATGTAAGACACCCATTGAAATGGGCTTACAAATTGCAAAAGATACTGAGGAAGATGACATGAACATTAATCTCGAAGATTTAGATATTTCAAATCCACATGGACTCGAGCGACCATCGTGGATGGATCCACTCCAACAAGTTTGCGAGAAGCTTCCATGA

Coding sequence (CDS)

ATGAGCAAACCATTTCCTTATTTCTATGACTTGAAAATTGTGTTTGGAAGAGATAGGGCTACTAGTGGTAGATGTAAGACACCCATTGAAATGGGCTTACAAATTGCAAAAGATACTGAGGAAGATGACATGAACATTAATCTCGAAGATTTAGATATTTCAAATCCACATGGACTCGAGCGACCATCGTGGATGGATCCACTCCAACAAGTTTGCGAGAAGCTTCCATGA

Protein sequence

MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLERPSWMDPLQQVCEKLP*

Homology

[Close]

BLAST of CSPI05G01850 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++K FPYFYDLKI+FGRDRAT GRCKTPIEMGLQIA+DTEEDDM+INLED DI NPHGLE
Sbjct: 39  LNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLE 98

Query: 61  RPSWMD 67
            PS  D
Sbjct: 99  PPSGED 104

[Close]

BLAST of CSPI05G01850 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++K FPYFYDLKI+FGRDRAT GRCKTPIEMGLQIA+DTEEDDM+INLED DI NPHGLE
Sbjct: 38  LNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLE 97

Query: 61  RPSWMD 67
            PS  D
Sbjct: 98  PPSGED 103

[Close]

BLAST of CSPI05G01850 vs. ExPASy TrEMBL
Match: A0A5D3CKC1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00580 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.1e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++K FPYFYDLKI+FGRDRAT GRCKTP+EMGLQIA+DTEEDDM+INLED DI NPHGLE
Sbjct: 39  LNKSFPYFYDLKIMFGRDRATGGRCKTPVEMGLQIARDTEEDDMDINLEDFDIPNPHGLE 98

Query: 61  RPSWMD 67
            PS  D
Sbjct: 99  PPSGED 104

[Close]

BLAST of CSPI05G01850 vs. ExPASy TrEMBL
Match: A0A5D3DJR9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold580G00150 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.6e-23
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++KPFPYFYDL+I+FGRDRAT GRCKTP+EMG QIA+DTEEDDM+INLE+ DI NPHGLE
Sbjct: 153 LNKPFPYFYDLEILFGRDRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLE 212

Query: 61  RPSWMDPL 69
            PS  D L
Sbjct: 213 PPSGEDML 220

[Close]

BLAST of CSPI05G01850 vs. ExPASy TrEMBL
Match: A0A5A7SW62 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00210 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.1e-22
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++KPFPYFYDL+IVFGRDRAT G+CKTP+EMG Q A+DTEEDDM INLED DI NPHGLE
Sbjct: 208 LNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGLE 267

Query: 61  RPSWMD 67
            PS  D
Sbjct: 268 PPSGED 273

[Close]

BLAST of CSPI05G01850 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++K FPYFYDLKI+FGRDRAT GRCKTPIEMGLQIA+DTEEDDM+INLED DI NPHGLE
Sbjct: 38  LNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLE 97

Query: 61  RPSWMD 67
            PS  D
Sbjct: 98  PPSGED 103

[Close]

BLAST of CSPI05G01850 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++K FPYFYDLKI+FGRDRAT GRCKTPIEMGLQIA+DTEEDDM+INLED DI NPHGLE
Sbjct: 39  LNKSFPYFYDLKIMFGRDRATGGRCKTPIEMGLQIARDTEEDDMDINLEDFDIPNPHGLE 98

Query: 61  RPSWMD 67
            PS  D
Sbjct: 99  PPSGED 104

[Close]

BLAST of CSPI05G01850 vs. NCBI nr
Match: TYK10886.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-23
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++K FPYFYDLKI+FGRDRAT GRCKTP+EMGLQIA+DTEEDDM+INLED DI NPHGLE
Sbjct: 39  LNKSFPYFYDLKIMFGRDRATGGRCKTPVEMGLQIARDTEEDDMDINLEDFDIPNPHGLE 98

Query: 61  RPSWMD 67
            PS  D
Sbjct: 99  PPSGED 104

[Close]

BLAST of CSPI05G01850 vs. NCBI nr
Match: KAA0060670.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23802.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.2e-22
Identity = 52/68 (76.47%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++KPFPYFYDL+I+FGRDRAT GRCKTP+EMG QIA+DTEEDDM+INLE+ DI NPHGLE
Sbjct: 153 LNKPFPYFYDLEILFGRDRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLE 212

Query: 61  RPSWMDPL 69
            PS  D L
Sbjct: 213 PPSGEDML 220

[Close]

BLAST of CSPI05G01850 vs. NCBI nr
Match: KAA0033487.1 (uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 4.4e-22
Identity = 51/66 (77.27%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1   MSKPFPYFYDLKIVFGRDRATSGRCKTPIEMGLQIAKDTEEDDMNINLEDLDISNPHGLE 60
           ++KPFPYFYDL+IVFGRDRAT G+CKTP+EMG Q A+DTEEDDM INLED DI NPHGLE
Sbjct: 208 LNKPFPYFYDLEIVFGRDRATGGKCKTPVEMGSQTARDTEEDDMIINLEDFDIPNPHGLE 267

Query: 61  RPSWMD 67
            PS  D
Sbjct: 268 PPSGED 273

The following BLAST results are available for this feature:

BLAST of CSPI05G01850 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G01850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VGQ0	8.6e-24	81.82	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CC17	8.6e-24	81.82	uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=...	[more]
A0A5D3CKC1	1.1e-23	80.30	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DJR9	5.6e-23	76.47	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SW62	2.1e-22	77.27	Myb_DNA-bind_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of CSPI05G01850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460440.1	1.8e-23	81.82	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]
KAA0067273.1	1.8e-23	81.82	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10886.1	2.3e-23	80.30	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0060670.1	1.2e-22	76.47	retrotransposon protein [Cucumis melo var. makuwa] >TYK23802.1 retrotransposon p...	[more]
KAA0033487.1	4.4e-22	77.27	uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI05G01850 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G01850.1	CSPI05G01850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding