CSPI05G01760 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G01760
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposon protein
LocationChr5: 2414113 .. 2414439 (+)
RNA-Seq ExpressionCSPI05G01760
SyntenyCSPI05G01760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGAAACAAACTGACACCATATTTGAGTTTAGGCAGCTATTCGAAACCTACTCAGCGTCGTTACCGAAGTTGGCTGAAAATGTCCACCAGAATACGTTTATGATTGGGCTTCAACAAAATATTAAGGCTAAGATTATCACCAATGAACCGATTGGGCTGGAAAGTATCATGCAACAAGCCCAAATTATTGAAGACCATCATTTAGCCCTCAAATTGGCTTCAGAGGTCATATCCTTTTCAAAAAAAGAAAAAAGAAAAATTGGCTTCAGAGGCATTGGGTACCGAGCCCCAAAAACAATGCATGGAATCTGCCCAATATCTTAG

mRNA sequence

ATGGTGAAACAAACTGACACCATATTTGAGTTTAGGCAGCTATTCGAAACCTACTCAGCGTCGTTACCGAAGTTGGCTGAAAATGTCCACCAGAATACGTTTATGATTGGGCTTCAACAAAATATTAAGGCTAAGATTATCACCAATGAACCGATTGGGCTGGAAAGTATCATGCAACAAGCCCAAATTATTGAAGACCATCATTTAGCCCTCAAATTGGCTTCAGAGGTCATATCCTTTTCAAAAAAAGAAAAAAGAAAAATTGGCTTCAGAGGCATTGGGTACCGAGCCCCAAAAACAATGCATGGAATCTGCCCAATATCTTAG

Coding sequence (CDS)

ATGGTGAAACAAACTGACACCATATTTGAGTTTAGGCAGCTATTCGAAACCTACTCAGCGTCGTTACCGAAGTTGGCTGAAAATGTCCACCAGAATACGTTTATGATTGGGCTTCAACAAAATATTAAGGCTAAGATTATCACCAATGAACCGATTGGGCTGGAAAGTATCATGCAACAAGCCCAAATTATTGAAGACCATCATTTAGCCCTCAAATTGGCTTCAGAGGTCATATCCTTTTCAAAAAAAGAAAAAAGAAAAATTGGCTTCAGAGGCATTGGGTACCGAGCCCCAAAAACAATGCATGGAATCTGCCCAATATCTTAG

Protein sequence

MVKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQAQIIEDHHLALKLASEVISFSKKEKRKIGFRGIGYRAPKTMHGICPIS*
Homology
BLAST of CSPI05G01760 vs. ExPASy TrEMBL
Match: A0A5D3DFL3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00520 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.7e-07
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 1   MVKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQ 60
           +V Q  +  E+ + F  YSA LP +AE+V ++TF+IGL+  +KA+++   P  LE  M++
Sbjct: 54  VVVQDGSYNEYVKKFVNYSAPLPYIAESVLRDTFLIGLEPALKAEVVGRHPQTLEDCMKE 113

Query: 61  AQIIEDHHLALKLASEVISFSK-----------KEKRKI 89
           AQ++ D +LALKLA   +   K           KEKR++
Sbjct: 114 AQLVNDRNLALKLARAELGIPKPKGGESSTTKIKEKREL 152

BLAST of CSPI05G01760 vs. ExPASy TrEMBL
Match: A0A6J1D5H9 (uncharacterized protein LOC111017476 OS=Momordica charantia OX=3673 GN=LOC111017476 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.7e-07
Identity = 30/75 (40.00%), Postives = 51/75 (68.00%), Query Frame = 0

Query: 2   VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQA 61
           +KQ  ++ E+++ FE  SA LP+L++ V + TF+ GL   +++K++  EP GLE IM +A
Sbjct: 150 IKQEGSVAEYQEAFEALSAPLPQLSDEVLECTFLNGLDLVVRSKVLATEPQGLEQIMHRA 209

Query: 62  QIIEDHHLALKLASE 77
           Q++ED   A++ A E
Sbjct: 210 QLVEDIATAVQEAGE 224

BLAST of CSPI05G01760 vs. ExPASy TrEMBL
Match: A0A5A7V689 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00280 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 30/73 (41.10%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 2   VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQA 61
           ++Q  +  ++ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++A
Sbjct: 234 IQQEGSYNDYVKKFVTYSAPLPYMAESVLVDAFVTGLEPSLQAEVISRHPQTLEECMREA 293

Query: 62  QIIEDHHLALKLA 75
           Q+I D +LALKLA
Sbjct: 294 QLINDRNLALKLA 306

BLAST of CSPI05G01760 vs. ExPASy TrEMBL
Match: A0A5D3DTH7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G001150 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.0e-06
Identity = 29/73 (39.73%), Postives = 50/73 (68.49%), Query Frame = 0

Query: 2   VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQA 61
           +KQ     ++ + F  YSA LP++AE+V  + F+IGL+ N++A++    P+ LE+ M++A
Sbjct: 171 IKQDGLYADYLKKFLEYSAPLPEMAESVLIDAFIIGLETNLQAEVKGRHPVTLEACMREA 230

Query: 62  QIIEDHHLALKLA 75
           Q++ D  LA+KLA
Sbjct: 231 QMVSDRDLAIKLA 243

BLAST of CSPI05G01760 vs. ExPASy TrEMBL
Match: A0A5A7T8C0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00570 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 29/73 (39.73%), Postives = 51/73 (69.86%), Query Frame = 0

Query: 2   VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQA 61
           ++Q  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++A
Sbjct: 172 IQQDGSYNEYVKKFVTYSAPLPYMAESVLVDAFVTGLEPSLQAEVISRHPQTLEDCMREA 231

Query: 62  QIIEDHHLALKLA 75
           Q++ D +LALKL+
Sbjct: 232 QLVNDRNLALKLS 244

BLAST of CSPI05G01760 vs. NCBI nr
Match: XP_031745472.1 (uncharacterized protein K02A2.6-like [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 2   VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQA 61
           +KQ  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++A
Sbjct: 113 IKQEGSYSEYVKKFVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEA 172

Query: 62  QIIEDHHLALKLASEVISF--SKKEKRKIGFRG 93
           Q++ D ++ALKLA E +     K+ +    F+G
Sbjct: 173 QLVNDRNIALKLAMEELDIVEPKRNENSSKFQG 205

BLAST of CSPI05G01760 vs. NCBI nr
Match: XP_031745726.1 (uncharacterized protein K02A2.6-like [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 0

Query: 2   VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQA 61
           +KQ  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++A
Sbjct: 84  IKQEGSYSEYVKKFVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEA 143

Query: 62  QIIEDHHLALKLASEVISF--SKKEKRKIGFRG 93
           Q++ D ++ALKLA E +     K+ +    F+G
Sbjct: 144 QLVNDRNIALKLAMEELDIVEPKRNENSSKFQG 176

BLAST of CSPI05G01760 vs. NCBI nr
Match: KAA0060319.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22069.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 5.7e-07
Identity = 37/99 (37.37%), Postives = 59/99 (59.60%), Query Frame = 0

Query: 1   MVKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQ 60
           +V Q  +  E+ + F  YSA LP +AE+V ++TF+IGL+  +KA+++   P  LE  M++
Sbjct: 54  VVVQDGSYNEYVKKFVNYSAPLPYIAESVLRDTFLIGLEPALKAEVVGRHPQTLEDCMKE 113

Query: 61  AQIIEDHHLALKLASEVISFSK-----------KEKRKI 89
           AQ++ D +LALKLA   +   K           KEKR++
Sbjct: 114 AQLVNDRNLALKLARAELGIPKPKGGESSTTKIKEKREL 152

BLAST of CSPI05G01760 vs. NCBI nr
Match: XP_031745419.1 (uncharacterized protein LOC116405630 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.4e-07
Identity = 34/93 (36.56%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 2   VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQA 61
           +KQ  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++A
Sbjct: 130 IKQEVSYSEYVKKFVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEA 189

Query: 62  QIIEDHHLALKLASEVISF--SKKEKRKIGFRG 93
           Q+  D ++ALKLA E +     K+ +    F+G
Sbjct: 190 QLANDRNIALKLAMEELDIVEPKRNENSSKFQG 222

BLAST of CSPI05G01760 vs. NCBI nr
Match: XP_031742100.1 (uncharacterized protein LOC116404055 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.4e-07
Identity = 34/93 (36.56%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 2   VKQTDTIFEFRQLFETYSASLPKLAENVHQNTFMIGLQQNIKAKIITNEPIGLESIMQQA 61
           +KQ  +  E+ + F TYSA LP +AE+V  + F+ GL+ +++A++I+  P  LE  M++A
Sbjct: 171 IKQEVSYSEYVKKFVTYSAPLPDMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEA 230

Query: 62  QIIEDHHLALKLASEVISF--SKKEKRKIGFRG 93
           Q+  D ++ALKLA E +     K+ +    F+G
Sbjct: 231 QLANDRNIALKLAMEELDIVEPKRNENSSKFQG 263

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DFL32.7e-0737.37Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1D5H94.7e-0740.00uncharacterized protein LOC111017476 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5A7V6893.0e-0641.10Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DTH73.0e-0639.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T8C04.0e-0639.73Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
Match NameE-valueIdentityDescription
XP_031745472.11.5e-0736.56uncharacterized protein K02A2.6-like [Cucumis sativus][more]
XP_031745726.11.5e-0736.56uncharacterized protein K02A2.6-like [Cucumis sativus][more]
KAA0060319.15.7e-0737.37retrotransposon protein [Cucumis melo var. makuwa] >TYK22069.1 retrotransposon p... [more]
XP_031745419.17.4e-0736.56uncharacterized protein LOC116405630 [Cucumis sativus][more]
XP_031742100.17.4e-0736.56uncharacterized protein LOC116404055 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G01760.1CSPI05G01760.1mRNA