Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTTCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAATACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCTTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAGTAATTTCTACTAATGTGTTTTGTTTGTTTGTGATTGTTATATTTAGAGGTGAACTTCTGGATTCCATGAAGTTACCGAAACAAACTACAAATATACACACAAGTATGAACGATTCTTTTGTGGGTGAGAGAGTCGGTTTACATTTCACGTTTGTAGAAAAGATATTGAAGAAATCCAAACAAGAAGTATTTTTAAATTTGTTATATGATCACTATTCATTAGGCAATCCAAACAAGAATAAAGGATACAACTCCTTTTGATTTCCCCCCC
mRNA sequence
ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTTCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAATACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCTTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAGTAATTTCTACTAATGTGTTTTGTTTGTTTGTGATTGTTATATTTAGAGGTGAACTTCTGGATTCCATGAAGTTACCGAAACAAACTACAAATATACACACAAGTATGAACGATTCTTTTGTGGGTGAGAGAGTCGGTTTACATTTCACGTTTGTAGAAAAGATATTGAAGAAATCCAAACAAGAAGTATTTTTAAATTTGTTATATGATCACTATTCATTAGGCAATCCAAACAAGAATAAAGGATACAACTCCTTTTGATTTCCCCCCC
Coding sequence (CDS)
ATGAATGAATGGAATTCATTCCCCCAGTTTGATGTTCTTCTTTCACCACAGATTCAAAACCCCACCATAATGCTTAAAGCCACAAAGAAGAAACTCAAAGGATTATGGTCCAAAATGAAGAAGAAGAATAAGAAGAAAAAACCAAACGAAACCCAAACAAATTCCTACCAATACTGCTGCATTTGCCATTGCTCCTCCTCAACCCATCAGCATCAGCAGCAGCAGCCCTCAGCTCCCCCACTTCCGCCATGGCTCAACGATGCTCCCACCTTTCTGCCGCCTTCAACGCAATCGCAATTTGAACATCCAGACACAGCTGATGAAATGGTGGAGCCGCTTGTGGCTAATCAGTGGTCTTACCAGCAATACTTGGTGGCAGAGCCGGTTTACGGGGTGCCGATCATCGTGGAAACTGAAAGTGGAAGAGGTCAGAAATGGAAAAGGTTGATTAAGTTATTTGAGTGCTTCTGCCCCTGTTTTGGTATTACACAACAACTTTACTACATACCATAG
Protein sequence
MNEWNSFPQFDVLLSPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQPSAPPLPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECFCPCFGITQQLYYIP*
Homology
BLAST of CSPI05G01710 vs. ExPASy TrEMBL
Match:
A0A0A0KJG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1)
HSP 1 Score: 348.2 bits (892), Expect = 1.9e-92
Identity = 164/170 (96.47%), Postives = 165/170 (97.06%), Query Frame = 0
Query: 1 MNEWNSFPQFDVLLSPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
MNEWNSF QFDVLL PQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC
Sbjct: 1 MNEWNSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
Query: 61 ICHCSSSTHQHQQQQPSAPPLPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY 120
ICHCSSSTHQH QQQPSAPPLP WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY
Sbjct: 61 ICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY 120
Query: 121 QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECFCPCFGITQQLYYIP 171
QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFEC CPCFGITQQLYY+P
Sbjct: 121 QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 170
BLAST of CSPI05G01710 vs. ExPASy TrEMBL
Match:
A0A5A7UIP5 (AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00680 PE=4 SV=1)
HSP 1 Score: 245.4 bits (625), Expect = 1.8e-61
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQPSAPPLPP 83
MLKATKKKLKGLWSKM KKKKPN+TQTN YQYCC CHCSSS+H H QPSAPPLPP
Sbjct: 1 MLKATKKKLKGLWSKM----KKKKPNKTQTNCYQYCCSCHCSSSSHLH--HQPSAPPLPP 60
Query: 84 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRG 143
WLN+ PTFLPP TQSQFEHPD AD M V NQWSYQQYLVAEPVYGVPIIV+TES R
Sbjct: 61 WLNEDPTFLPPPTQSQFEHPDRADGM----VTNQWSYQQYLVAEPVYGVPIIVKTESRRD 120
Query: 144 QKWKRLIKLFECFCPCFGITQQLYYIP 171
QKWKRLIKLF+CFCPCFGITQQLYYIP
Sbjct: 121 QKWKRLIKLFDCFCPCFGITQQLYYIP 137
BLAST of CSPI05G01710 vs. ExPASy TrEMBL
Match:
A0A6J1EYP6 (uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC111439771 PE=4 SV=1)
HSP 1 Score: 106.3 bits (264), Expect = 1.3e-19
Identity = 71/148 (47.97%), Postives = 87/148 (58.78%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQPSAPPLPP 83
MLKA KKKLK WS+ KK+ K PN+ +CC CHCSS+ QPSAPPLPP
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPNPNDFPPPC--HCCTCHCSSAI------QPSAPPLPP 60
Query: 84 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR- 143
WL+D PPS EHP+ A E+ PLVA YQ Y+ +PVYGVPIIV+T+S R
Sbjct: 61 WLDD--RIFPPS-----EHPEEA-EIAAPLVAAP-LYQHYMDPDPVYGVPIIVQTDSRRD 120
Query: 144 GQKWKRL----------IKLFECFCPCF 161
G + +R I++ CFCPCF
Sbjct: 121 GSRSRRFAVSGCVGELGIRIIGCFCPCF 130
BLAST of CSPI05G01710 vs. ExPASy TrEMBL
Match:
A0A1U8PF34 (uncharacterized protein LOC107958521 OS=Gossypium hirsutum OX=3635 GN=LOC107958521 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQ--------Q 83
M KA KKLK WS+ K+K K P + CICHCS ST H Q Q
Sbjct: 1 MFKAV-KKLK-FWSRKKRKRKSLAPQPSH-------CICHCSHSTSSHYYQCNYPYSPLQ 60
Query: 84 PSAPPLPPWL------NDAPTFLPPSTQ--SQFEHPDTADEMVE--PLV--ANQWSYQQY 143
PSAPPLPPWL ++ PT + +F HP + +E P++ A SYQQY
Sbjct: 61 PSAPPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESAPMIPAAAVPSYQQY 120
Query: 144 LVAEPVYGVPIIVETESGRGQKWKRL--------IKLFECFCPCFGITQ 165
+V+ PVYG P++ +T GR ++ ++L CFCPC I +
Sbjct: 121 MVSNPVYGPPVVQQT--GRRERSGGYFGCIIDISLRLIRCFCPCVHIRE 158
BLAST of CSPI05G01710 vs. ExPASy TrEMBL
Match:
A0A5J5VM38 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G115100v1 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQ--------Q 83
M KA KKLK WS+ K+K K P + CICHCS ST H Q Q
Sbjct: 1 MFKAV-KKLK-FWSRKKRKRKSLAPQPSH-------CICHCSHSTSSHYYQCNYPYSPLQ 60
Query: 84 PSAPPLPPWL------NDAPTFLPPSTQ--SQFEHPDTADEMVE--PLV--ANQWSYQQY 143
PSAPPLPPWL ++ PT + +F HP + +E P++ A SYQQY
Sbjct: 61 PSAPPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESAPMIPAAAVPSYQQY 120
Query: 144 LVAEPVYGVPIIVETESGRGQKWKRL--------IKLFECFCPCFGITQ 165
+V+ PVYG P++ +T GR ++ ++L CFCPC I +
Sbjct: 121 MVSNPVYGPPVVQQT--GRRERSGGYFGCIIDISLRLIRCFCPCVHIRE 158
BLAST of CSPI05G01710 vs. NCBI nr
Match:
KGN49708.1 (hypothetical protein Csa_018344 [Cucumis sativus])
HSP 1 Score: 348.2 bits (892), Expect = 4.0e-92
Identity = 164/170 (96.47%), Postives = 165/170 (97.06%), Query Frame = 0
Query: 1 MNEWNSFPQFDVLLSPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
MNEWNSF QFDVLL PQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC
Sbjct: 1 MNEWNSFSQFDVLLPPQIQNPTIMLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCC 60
Query: 61 ICHCSSSTHQHQQQQPSAPPLPPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY 120
ICHCSSSTHQH QQQPSAPPLP WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY
Sbjct: 61 ICHCSSSTHQHNQQQPSAPPLPLWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSY 120
Query: 121 QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECFCPCFGITQQLYYIP 171
QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFEC CPCFGITQQLYY+P
Sbjct: 121 QQYLVAEPVYGVPIIVETESGRGQKWKRLIKLFECLCPCFGITQQLYYVP 170
BLAST of CSPI05G01710 vs. NCBI nr
Match:
KAA0054146.1 (AUX/IAA protein [Cucumis melo var. makuwa])
HSP 1 Score: 245.4 bits (625), Expect = 3.7e-61
Identity = 121/147 (82.31%), Postives = 126/147 (85.71%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQPSAPPLPP 83
MLKATKKKLKGLWSKM KKKKPN+TQTN YQYCC CHCSSS+H H QPSAPPLPP
Sbjct: 1 MLKATKKKLKGLWSKM----KKKKPNKTQTNCYQYCCSCHCSSSSHLH--HQPSAPPLPP 60
Query: 84 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGRG 143
WLN+ PTFLPP TQSQFEHPD AD M V NQWSYQQYLVAEPVYGVPIIV+TES R
Sbjct: 61 WLNEDPTFLPPPTQSQFEHPDRADGM----VTNQWSYQQYLVAEPVYGVPIIVKTESRRD 120
Query: 144 QKWKRLIKLFECFCPCFGITQQLYYIP 171
QKWKRLIKLF+CFCPCFGITQQLYYIP
Sbjct: 121 QKWKRLIKLFDCFCPCFGITQQLYYIP 137
BLAST of CSPI05G01710 vs. NCBI nr
Match:
XP_022933064.1 (uncharacterized protein LOC111439771 [Cucurbita moschata])
HSP 1 Score: 106.3 bits (264), Expect = 2.7e-19
Identity = 71/148 (47.97%), Postives = 87/148 (58.78%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQQPSAPPLPP 83
MLKA KKKLK WS+ KK+ K PN+ +CC CHCSS+ QPSAPPLPP
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPNPNDFPPPC--HCCTCHCSSAI------QPSAPPLPP 60
Query: 84 WLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESGR- 143
WL+D PPS EHP+ A E+ PLVA YQ Y+ +PVYGVPIIV+T+S R
Sbjct: 61 WLDD--RIFPPS-----EHPEEA-EIAAPLVAAP-LYQHYMDPDPVYGVPIIVQTDSRRD 120
Query: 144 GQKWKRL----------IKLFECFCPCF 161
G + +R I++ CFCPCF
Sbjct: 121 GSRSRRFAVSGCVGELGIRIIGCFCPCF 130
BLAST of CSPI05G01710 vs. NCBI nr
Match:
KAG6601672.1 (hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 105.1 bits (261), Expect = 5.9e-19
Identity = 72/150 (48.00%), Postives = 88/150 (58.67%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQ--YCCICHCSSSTHQHQQQQPSAPPL 83
MLKA KKKLK WS+ KK+ K PN+ +CC CHCSS+ QPSAPPL
Sbjct: 1 MLKAAKKKLK-FWSRSKKRKKIPDPNDFTPPPPPPCHCCTCHCSSAI------QPSAPPL 60
Query: 84 PPWLNDAPTFLPPSTQSQFEHPDTADEMVEPLVANQWSYQQYLVAEPVYGVPIIVETESG 143
PPWL+D F PP EHP+ A E+ PLVA YQQY+ +PVYGVPIIV+T+S
Sbjct: 61 PPWLDDR-IFPPP------EHPEEA-EIAAPLVAAP-LYQQYMDPDPVYGVPIIVQTDSR 120
Query: 144 R-GQKWKRL----------IKLFECFCPCF 161
R G + +R I++ CFCPCF
Sbjct: 121 RDGSRSRRFAVSGCVGDLGIRIIGCFCPCF 134
BLAST of CSPI05G01710 vs. NCBI nr
Match:
XP_016749822.1 (uncharacterized protein LOC107958521 [Gossypium hirsutum] >KAB2081181.1 hypothetical protein ES319_A05G115100v1 [Gossypium barbadense] >KAG4198822.1 hypothetical protein ERO13_A05G110000v2 [Gossypium hirsutum] >TYH16438.1 hypothetical protein ES288_A05G117100v1 [Gossypium darwinii])
HSP 1 Score: 81.3 bits (199), Expect = 9.2e-12
Identity = 63/169 (37.28%), Postives = 84/169 (49.70%), Query Frame = 0
Query: 24 MLKATKKKLKGLWSKMKKKNKKKKPNETQTNSYQYCCICHCSSSTHQHQQQ--------Q 83
M KA KKLK WS+ K+K K P + CICHCS ST H Q Q
Sbjct: 1 MFKAV-KKLK-FWSRKKRKRKSLAPQPSH-------CICHCSHSTSSHYYQCNYPYSPLQ 60
Query: 84 PSAPPLPPWL------NDAPTFLPPSTQ--SQFEHPDTADEMVE--PLV--ANQWSYQQY 143
PSAPPLPPWL ++ PT + +F HP + +E P++ A SYQQY
Sbjct: 61 PSAPPLPPWLQAELTQDEFPTLEQAEAEPFPEFSHPTDLVQDIESAPMIPAAAVPSYQQY 120
Query: 144 LVAEPVYGVPIIVETESGRGQKWKRL--------IKLFECFCPCFGITQ 165
+V+ PVYG P++ +T GR ++ ++L CFCPC I +
Sbjct: 121 MVSNPVYGPPVVQQT--GRRERSGGYFGCIIDISLRLIRCFCPCVHIRE 158
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KJG0 | 1.9e-92 | 96.47 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G077760 PE=4 SV=1 | [more] |
| A0A5A7UIP5 | 1.8e-61 | 82.31 | AUX/IAA protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G0068... | [more] |
| A0A6J1EYP6 | 1.3e-19 | 47.97 | uncharacterized protein LOC111439771 OS=Cucurbita moschata OX=3662 GN=LOC1114397... | [more] |
| A0A1U8PF34 | 4.4e-12 | 37.28 | uncharacterized protein LOC107958521 OS=Gossypium hirsutum OX=3635 GN=LOC1079585... | [more] |
| A0A5J5VM38 | 4.4e-12 | 37.28 | Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G115100v1 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN49708.1 | 4.0e-92 | 96.47 | hypothetical protein Csa_018344 [Cucumis sativus] | [more] |
| KAA0054146.1 | 3.7e-61 | 82.31 | AUX/IAA protein [Cucumis melo var. makuwa] | [more] |
| XP_022933064.1 | 2.7e-19 | 47.97 | uncharacterized protein LOC111439771 [Cucurbita moschata] | [more] |
| KAG6601672.1 | 5.9e-19 | 48.00 | hypothetical protein SDJN03_06905, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_016749822.1 | 9.2e-12 | 37.28 | uncharacterized protein LOC107958521 [Gossypium hirsutum] >KAB2081181.1 hypothet... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
