CSPI05G01650 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G01650
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionC2 domain-containing protein
LocationChr5: 2297727 .. 2297960 (+)
RNA-Seq ExpressionCSPI05G01650
SyntenyCSPI05G01650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAGGAAGCTTTTAAGGAGGAAAGAGAAGATTCCAACCAAGACTACCTCATTGCTCTTTGAAGCTTCTGCCTTGCTAGTGACCTCAAATTTTCCCCCCAAAAACCCCATCAATTTTGGTTTCCTCCTCCCAATCTCTTTCTTCCTCGGCAAGATTTGGATCAAGATCAAGGCCCAAAAGACTTGTAAAAGCTCGAGTTTACCCTCACCTCTTCAAACCGTTTCCTAA

mRNA sequence

ATGGAGAAGAGGAAGCTTTTAAGGAGGAAAGAGAAGATTCCAACCAAGACTACCTCATTGCTCTTTGAAGCTTCTGCCTTGCTAGTGACCTCAAATTTTCCCCCCAAAAACCCCATCAATTTTGGTTTCCTCCTCCCAATCTCTTTCTTCCTCGGCAAGATTTGGATCAAGATCAAGGCCCAAAAGACTTGTAAAAGCTCGAGTTTACCCTCACCTCTTCAAACCGTTTCCTAA

Coding sequence (CDS)

ATGGAGAAGAGGAAGCTTTTAAGGAGGAAAGAGAAGATTCCAACCAAGACTACCTCATTGCTCTTTGAAGCTTCTGCCTTGCTAGTGACCTCAAATTTTCCCCCCAAAAACCCCATCAATTTTGGTTTCCTCCTCCCAATCTCTTTCTTCCTCGGCAAGATTTGGATCAAGATCAAGGCCCAAAAGACTTGTAAAAGCTCGAGTTTACCCTCACCTCTTCAAACCGTTTCCTAA

Protein sequence

MEKRKLLRRKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKAQKTCKSSSLPSPLQTVS*
Homology
[Close]
BLAST of CSPI05G01650 vs. ExPASy TrEMBL
Match: A0A0A0KMR3 (C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G077210 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 9.3e-34
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MEKRKLLRRKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKA 60
           MEKRKLLRRKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKA
Sbjct: 375 MEKRKLLRRKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKA 434

Query: 61  QKTCKSSSLPSPLQTVS 78
           QKTCKSSSLPSPLQTVS
Sbjct: 435 QKTCKSSSLPSPLQTVS 451

[Close]
BLAST of CSPI05G01650 vs. NCBI nr
Match: KAE8648244.1 (hypothetical protein Csa_018339 [Cucumis sativus])

HSP 1 Score: 152.1 bits (383), Expect = 1.9e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MEKRKLLRRKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKA 60
           MEKRKLLRRKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKA
Sbjct: 283 MEKRKLLRRKEKIPTKTTSLLFEASALLVTSNFPPKNPINFGFLLPISFFLGKIWIKIKA 342

Query: 61  QKTCKSSSLPSPLQTVS 78
           QKTCKSSSLPSPLQTVS
Sbjct: 343 QKTCKSSSLPSPLQTVS 359

The following BLAST results are available for this feature:
BLAST of CSPI05G01650 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G01650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMR39.3e-34100.00C2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G077210 PE=4 SV=... [more]
BLAST of CSPI05G01650 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648244.11.9e-33100.00hypothetical protein Csa_018339 [Cucumis sativus][more]
BLAST of CSPI05G01650 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G01650.1CSPI05G01650.1mRNA