CSPI05G01440 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G01440
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTransposase-like protein
LocationChr5: 2024698 .. 2027571 (+)
RNA-Seq ExpressionCSPI05G01440
SyntenyCSPI05G01440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGACATCAGCAGGTGTTCTAAATGTAACATTTCAAGGTGGAAGACAAGTAAGAACTTGAAGAGATTAATGAAGTTATAGTCAAACAGTTGTGGTATTTTTCAATTGTTCCGAGGTTTTTAAGGATGTTCAAGAACTTCGAACATGCAAAGAACTCGTGTTGCCATGCAAATGACAGGAAAGTAGACAGTGTGTTGAGGCGTCCAACTGATACTCCATCTTGGAGGTTGGTAGACCATCTATGGCCAAATTTTAGGTTCAAACCGAGAAACCTCTACTTAGGGTTGTCCACAGATGGCACCAATCTATATGGAGATTTATAGACGAAATATAGTTGTTGGCTGGTGATTGCTACAATATACAACCTTCCACCGTGGGTATGTATGAGAGAAAAGTATTTGATGTTAACTATGTTAATCTCATGACCTAAGCAACCAGGATACAACATAAATGTCTACCTAGCACCTTTGATTGGTTATCTCAAACATACGTGGAAAGAAGGTGTTTAGTGTTTTGATGCACATAAAGAAGAATCATTCACCCCGTGAGTTGTTTACTGTGAACCATCAATGATTTTTCTACATACGACAACCTGTTTGGATGTAGCGTGAAGGGGTATAAGGCTTGTCCAATATGTGGGAAGGAGACTTTTTCTATAAGACTACCACATGGGAAGAAAAATGCATAAATGAGACATAGAAAATACCTACAAAGACATCACCCTTATAAGAGACAAAAGAAAGCATTTGATGGTAATCAGGAGCATGGGACACCTCCGTTCCCTTTATCAGGTGAGGTAATCTATAATACCCTTAAGGACAACGTCACACCCTAAACTGCAATAGGACCAAAACACTGAAGTAAAAGGAATATGATGTGATTTAGTTACAACCTTAAAATTCTCTTACCGACTAATTCAACCTCAACACCTTTTAAATACTAAGAGAAAACATAACGTCATAGAAGTCGTATCGAACGCCAAATACATTCAAAGAATCTTAATGCGAAAAACTTAACGCAATCAATTCAACCAAAACTTACACTTTATTAATAAGAGGTGTTTAATACAACAATGTAAAGAAACAACTCTTAACCAAAATTTACATTAAATAAACTCTTAAACGCCTAGTAACTTTCTCATCATGCCGCAAAACCTCCCTCTTCCTTCTCTACTTGGCTTAAATGTCTTATTCTAGAGGATTAATTTTGAAAACATCAGTCGAATGACTCAGTGGGGTTTTATGAAAACCTTTTGCAATATATTTTCATAATCATTTCACAAAAATAATATCAAATCATTTAAACATACTAACAAATCATTTCATTTCGCATAAACCTTTCTTAACAAATAATTTTCTTTCGCTAAGGATCCCAAATTATCCTCTATGCTTGGTCTTATTACCTCGCGTTTAGACTACTATATCAACAACATTTGAGAACATACAAATTTGTTCTTGTTACTCAGGACACTAAGCTTTATACGCTCCTTGCAACGTATAAGCCAACTTCTTATTATCATGTAGCCCGTACACCCCATGGTGGTCTTTATGTGTACATAAAAGTTAGCATCATCTTAAAGAAACAACTAATAGTTTGGAAATTATTTTATAGTATTGAAATCATAATCATCAAATCAATCTTTAACATTATAAATCATGCTTGAAAACATAACTTTTCATAGAAATCTCTTTGATACATACTCATTTGAATTCTTCTTTCAAATCAGTAAAGAGAAATCATAACAAAGTTTTTAACATAAATTCATTTGAGAGAAAAGCACTCACAAAACTTTACTAAAGAAGTTCTTCTTCTTCTCGCAAGCCCCTTCTCGCGTAGCTAAACCAACAACACTTCAACATTTCAACAAAACTCCCACCATCCCCTCAGTTATCCAAATCCTCTTATTTATAGAGCCCCTAAACTAACTTAGTAATGCATAAACTCTTCTCAGTTTGCTAGCTTCTACTTAAAACTTTACATGTGTAAATCAATATTCAACCTCGCCATGTTTAAGTCCTTAATCTTACACGTTAACCCCTGTCAAATCAGATTTGACATTTTTTTCGCCAGACCTTGCTTCTCGCCTAACCCAAACCACGAATAACTTCAACCACTTAACATTTCTCGCGAATAACCTTATCGTGTGGTTATATTTTTACTATAAAAAACCTTCCACGCGAACTAACCGACTTTTACTTGCATAGAACTCTTATCACGAACTTAAACTCCAAGAATTTCTCGCAGACTTCTTCTTCGTGAAACATTTGGTTCCTCTCTCGAAGACCACCCAAAACCCGTAGTGTAACACTTTTTAAAAACTTTCACTTCTTAACTTAAGGGAAGACTTTTTCTCTTCTTATCACACAACTTTTTTTGTGAACTACCCACTTAATCGAAAAAATGTATACTTAACCATAAAAGATTTTATCGCTTAATCCTTTTCGTAAATTTATTCAAACACCAAATTCTTAATACTTTTGTCGAATATTACTTCCTTACTCAAATTAGAAATGAGTCTCATAGACAACACCTTTCCATGTGGTAAAAGGTCCAGTAGGAGGTTAAATGAAGACATTTCAAATGTCTACTAGAAGAGGATTATATTTATGCATTCTTTGAGTTACCATACTGGAAAAAAATTACATGTAAGATAATGTCTTGATGTTATGCATATTGAGAAGAGTATGTTGATGAATATAATTGGTACACTACTCGACATGCCAGAGGAAGAGTAAGGATCGACGGAGTTCTAGACCCGATTTGGTAGAAATGAACATTCGACCTGAGTTGGCCCCTTTGTCTGATGGGAGTAGAACTTACATACCTGCAGCATGTTATACATTATCAAGAAGGTTATTCATCGAATTTTAG

mRNA sequence

ATGGCAGACATCAGCAGGTTTTTAAGGATGTTCAAGAACTTCGAACATGCAAAGAACTCGTGTTGCCATGCAAATGACAGGAAAGTAGACAGTGTGTTGAGGCGTCCAACTGATACTCCATCTTGGAGGTTGACGAAATATAGTTGTTGGCTGGTGATTGCTACAATATACAACCTTCCACCGTGGGAGCATGGGACACCTCCGTTCCCTTTATCAGGTGAGGACACTAAGCTTTATACGCTCCTTGCAACGTATAAGCCAACTTCTTATTATCATGTAGCCCGTACACCCCATGGTGGTCTTTATAGGAAGAGTAAGGATCGACGGAGTTCTAGACCCGATTTGGTAGAAATGAACATTCGACCTGAGTTGGCCCCTTTGTCTGATGGGAGTAGAACTTACATACCTGCAGCATGTTATACATTATCAAGAAGGTTATTCATCGAATTTTAG

Coding sequence (CDS)

ATGGCAGACATCAGCAGGTTTTTAAGGATGTTCAAGAACTTCGAACATGCAAAGAACTCGTGTTGCCATGCAAATGACAGGAAAGTAGACAGTGTGTTGAGGCGTCCAACTGATACTCCATCTTGGAGGTTGACGAAATATAGTTGTTGGCTGGTGATTGCTACAATATACAACCTTCCACCGTGGGAGCATGGGACACCTCCGTTCCCTTTATCAGGTGAGGACACTAAGCTTTATACGCTCCTTGCAACGTATAAGCCAACTTCTTATTATCATGTAGCCCGTACACCCCATGGTGGTCTTTATAGGAAGAGTAAGGATCGACGGAGTTCTAGACCCGATTTGGTAGAAATGAACATTCGACCTGAGTTGGCCCCTTTGTCTGATGGGAGTAGAACTTACATACCTGCAGCATGTTATACATTATCAAGAAGGTTATTCATCGAATTTTAG

Protein sequence

MADISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRLTKYSCWLVIATIYNLPPWEHGTPPFPLSGEDTKLYTLLATYKPTSYYHVARTPHGGLYRKSKDRRSSRPDLVEMNIRPELAPLSDGSRTYIPAACYTLSRRLFIEF*
Homology
BLAST of CSPI05G01440 vs. ExPASy TrEMBL
Match: A0A5A7UR43 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 85/172 (49.42%), Postives = 94/172 (54.65%), Query Frame = 0

Query: 4   ISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------- 63
           + RFLRMFKN E+AKN C HANDRKVD VLR   DTPSWRL                   
Sbjct: 123 VPRFLRMFKNSEYAKNLCGHANDRKVDGVLRHLADTPSWRLVDHLWPDFGSEPRNLRLGL 182

Query: 64  ------------TKYSCWLVIATIYNLPPWEHGTPPFPLSGEDTKLYTLLATYKPTSYYH 123
                       TKYSCW VIATIYNL PW        +  +   L  L++  K   Y  
Sbjct: 183 STDGINPYGDLSTKYSCWPVIATIYNLLPW------LCMRRKYLMLTMLISGPKQPGY-- 242

Query: 124 VARTPHGGLYRKSKDRRSSRPDLVEMNIRPELAPLSDGSRTYIPAACYTLSR 145
                   +  KSKD  S+  DLVEMNIRPELAP+SD SRTYIPAACYTLSR
Sbjct: 243 -------DIKGKSKDGLSAILDLVEMNIRPELAPVSDESRTYIPAACYTLSR 279

BLAST of CSPI05G01440 vs. ExPASy TrEMBL
Match: A0A5D3DGT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19523G00260 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.1e-29
Identity = 85/172 (49.42%), Postives = 94/172 (54.65%), Query Frame = 0

Query: 4   ISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------- 63
           + RFLRMFKN E+AKN C HANDRKVD VLR   DTPSWRL                   
Sbjct: 123 VPRFLRMFKNSEYAKNLCGHANDRKVDGVLRHLADTPSWRLVDHLWPDFGSEPRNLRLGL 182

Query: 64  ------------TKYSCWLVIATIYNLPPWEHGTPPFPLSGEDTKLYTLLATYKPTSYYH 123
                       TKYSCW VIATIYNL PW        +  +   L  L++  K   Y  
Sbjct: 183 STDGINPYGDLSTKYSCWPVIATIYNLLPW------LCMRRKYLMLTMLISGPKQPGY-- 242

Query: 124 VARTPHGGLYRKSKDRRSSRPDLVEMNIRPELAPLSDGSRTYIPAACYTLSR 145
                   +  KSKD  S+  DLVEMNIRPELAP+SD SRTYIPAACYTLSR
Sbjct: 243 -------DIKGKSKDGLSAILDLVEMNIRPELAPVSDESRTYIPAACYTLSR 279

BLAST of CSPI05G01440 vs. ExPASy TrEMBL
Match: A0A5A7T3F8 (Transposase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001930 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.5e-24
Identity = 103/313 (32.91%), Postives = 108/313 (34.50%), Query Frame = 0

Query: 4   ISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------- 63
           + RFLRMFKN E+AK+ C HANDRKVD VLR P DTPSWRL                   
Sbjct: 217 VPRFLRMFKNSEYAKHLCWHANDRKVDGVLRHPADTPSWRLVDHLWPDFGSEPRNLRLGL 276

Query: 64  ------------TKYSCWLVIATIYNLPPW------------------------------ 123
                       TKYSCW VIATIYNLPPW                              
Sbjct: 277 STDGINPYRDLSTKYSCWPVIATIYNLPPWLCMRRKYLMLTMLISGPKQPGYDINVYLAP 336

Query: 124 ------------------------------------------------------------ 145
                                                                       
Sbjct: 337 LIDDLKLMWEEGVQCFDAHRNERFTLRAVLLWTINDFPAYGNLCGCSVKGYKACPICGEE 396

BLAST of CSPI05G01440 vs. ExPASy TrEMBL
Match: A0A5A7USJ8 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00320 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.9e-24
Identity = 98/315 (31.11%), Postives = 109/315 (34.60%), Query Frame = 0

Query: 4   ISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------- 63
           + RFLRMFKN E+AK+ C HANDRKVD VLR P DTPSWRL                   
Sbjct: 356 VPRFLRMFKNSEYAKHLCWHANDRKVDGVLRHPADTPSWRLVDHLWPDFGSEPRNLHLGL 415

Query: 64  ------------TKYSCWLVIATIYNLPPW------------------------------ 123
                       TKYSCW VIATIYNLPPW                              
Sbjct: 416 STDGINPYGDLSTKYSCWPVIATIYNLPPWLCMRRKYLMLTMLISGPKQPGYDINVYLAP 475

Query: 124 ------------------------------------------------------------ 145
                                                                       
Sbjct: 476 LIDDLKLMWEEGNLCGCSVKGYKACPICGEETSSIRLPHGKKNAYMGHRKYLPRDHPYRR 535

BLAST of CSPI05G01440 vs. ExPASy TrEMBL
Match: A0A5D3E4X2 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00350 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.4e-23
Identity = 76/167 (45.51%), Postives = 83/167 (49.70%), Query Frame = 0

Query: 10  MFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------------- 69
           MFKN E+AKN C HAND KVD VLR P DTPSWRL                         
Sbjct: 1   MFKNSEYAKNLCWHANDMKVDGVLRHPVDTPSWRLVDHLWPDFGFEPRNLRLGLSTYGIN 60

Query: 70  ------TKYSCWLVIATI-YNLPPWEHGTPPFPLSGEDTKLYTLLATYKPTSYYHVARTP 129
                 TKYSCW VIA I   + P+        + G      TLL               
Sbjct: 61  PYRDLSTKYSCWPVIAIIDLRIKPFHAKNVLMNIIG------TLL--------------- 120

Query: 130 HGGLYRKSKDRRSSRPDLVEMNIRPELAPLSDGSRTYIPAACYTLSR 145
              +  KSKD  S+R DLVEMNIRPELAP+ DGSRTYIPA CYTLSR
Sbjct: 121 --DIPGKSKDGLSARLDLVEMNIRPELAPMFDGSRTYIPATCYTLSR 144

BLAST of CSPI05G01440 vs. NCBI nr
Match: TYK22489.1 (hypothetical protein E5676_scaffold19523G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-29
Identity = 85/172 (49.42%), Postives = 94/172 (54.65%), Query Frame = 0

Query: 4   ISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------- 63
           + RFLRMFKN E+AKN C HANDRKVD VLR   DTPSWRL                   
Sbjct: 123 VPRFLRMFKNSEYAKNLCGHANDRKVDGVLRHLADTPSWRLVDHLWPDFGSEPRNLRLGL 182

Query: 64  ------------TKYSCWLVIATIYNLPPWEHGTPPFPLSGEDTKLYTLLATYKPTSYYH 123
                       TKYSCW VIATIYNL PW        +  +   L  L++  K   Y  
Sbjct: 183 STDGINPYGDLSTKYSCWPVIATIYNLLPW------LCMRRKYLMLTMLISGPKQPGY-- 242

Query: 124 VARTPHGGLYRKSKDRRSSRPDLVEMNIRPELAPLSDGSRTYIPAACYTLSR 145
                   +  KSKD  S+  DLVEMNIRPELAP+SD SRTYIPAACYTLSR
Sbjct: 243 -------DIKGKSKDGLSAILDLVEMNIRPELAPVSDESRTYIPAACYTLSR 279

BLAST of CSPI05G01440 vs. NCBI nr
Match: KAA0058342.1 (hypothetical protein E6C27_scaffold409G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 4.3e-29
Identity = 85/172 (49.42%), Postives = 94/172 (54.65%), Query Frame = 0

Query: 4   ISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------- 63
           + RFLRMFKN E+AKN C HANDRKVD VLR   DTPSWRL                   
Sbjct: 123 VPRFLRMFKNSEYAKNLCGHANDRKVDGVLRHLADTPSWRLVDHLWPDFGSEPRNLRLGL 182

Query: 64  ------------TKYSCWLVIATIYNLPPWEHGTPPFPLSGEDTKLYTLLATYKPTSYYH 123
                       TKYSCW VIATIYNL PW        +  +   L  L++  K   Y  
Sbjct: 183 STDGINPYGDLSTKYSCWPVIATIYNLLPW------LCMRRKYLMLTMLISGPKQPGY-- 242

Query: 124 VARTPHGGLYRKSKDRRSSRPDLVEMNIRPELAPLSDGSRTYIPAACYTLSR 145
                   +  KSKD  S+  DLVEMNIRPELAP+SD SRTYIPAACYTLSR
Sbjct: 243 -------DIKGKSKDGLSAILDLVEMNIRPELAPVSDESRTYIPAACYTLSR 279

BLAST of CSPI05G01440 vs. NCBI nr
Match: KAA0038004.1 (transposase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 3.2e-24
Identity = 103/313 (32.91%), Postives = 108/313 (34.50%), Query Frame = 0

Query: 4   ISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------- 63
           + RFLRMFKN E+AK+ C HANDRKVD VLR P DTPSWRL                   
Sbjct: 217 VPRFLRMFKNSEYAKHLCWHANDRKVDGVLRHPADTPSWRLVDHLWPDFGSEPRNLRLGL 276

Query: 64  ------------TKYSCWLVIATIYNLPPW------------------------------ 123
                       TKYSCW VIATIYNLPPW                              
Sbjct: 277 STDGINPYRDLSTKYSCWPVIATIYNLPPWLCMRRKYLMLTMLISGPKQPGYDINVYLAP 336

Query: 124 ------------------------------------------------------------ 145
                                                                       
Sbjct: 337 LIDDLKLMWEEGVQCFDAHRNERFTLRAVLLWTINDFPAYGNLCGCSVKGYKACPICGEE 396

BLAST of CSPI05G01440 vs. NCBI nr
Match: KAA0057657.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-23
Identity = 98/315 (31.11%), Postives = 109/315 (34.60%), Query Frame = 0

Query: 4   ISRFLRMFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------- 63
           + RFLRMFKN E+AK+ C HANDRKVD VLR P DTPSWRL                   
Sbjct: 356 VPRFLRMFKNSEYAKHLCWHANDRKVDGVLRHPADTPSWRLVDHLWPDFGSEPRNLHLGL 415

Query: 64  ------------TKYSCWLVIATIYNLPPW------------------------------ 123
                       TKYSCW VIATIYNLPPW                              
Sbjct: 416 STDGINPYGDLSTKYSCWPVIATIYNLPPWLCMRRKYLMLTMLISGPKQPGYDINVYLAP 475

Query: 124 ------------------------------------------------------------ 145
                                                                       
Sbjct: 476 LIDDLKLMWEEGNLCGCSVKGYKACPICGEETSSIRLPHGKKNAYMGHRKYLPRDHPYRR 535

BLAST of CSPI05G01440 vs. NCBI nr
Match: TYK30621.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-22
Identity = 76/167 (45.51%), Postives = 83/167 (49.70%), Query Frame = 0

Query: 10  MFKNFEHAKNSCCHANDRKVDSVLRRPTDTPSWRL------------------------- 69
           MFKN E+AKN C HAND KVD VLR P DTPSWRL                         
Sbjct: 1   MFKNSEYAKNLCWHANDMKVDGVLRHPVDTPSWRLVDHLWPDFGFEPRNLRLGLSTYGIN 60

Query: 70  ------TKYSCWLVIATI-YNLPPWEHGTPPFPLSGEDTKLYTLLATYKPTSYYHVARTP 129
                 TKYSCW VIA I   + P+        + G      TLL               
Sbjct: 61  PYRDLSTKYSCWPVIAIIDLRIKPFHAKNVLMNIIG------TLL--------------- 120

Query: 130 HGGLYRKSKDRRSSRPDLVEMNIRPELAPLSDGSRTYIPAACYTLSR 145
              +  KSKD  S+R DLVEMNIRPELAP+ DGSRTYIPA CYTLSR
Sbjct: 121 --DIPGKSKDGLSARLDLVEMNIRPELAPMFDGSRTYIPATCYTLSR 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UR432.1e-2949.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DGT72.1e-2949.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T3F81.5e-2432.91Transposase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5A7USJ89.9e-2431.11Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43054G00320 ... [more]
A0A5D3E4X28.4e-2345.51Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00350 ... [more]
Match NameE-valueIdentityDescription
TYK22489.14.3e-2949.42hypothetical protein E5676_scaffold19523G00260 [Cucumis melo var. makuwa][more]
KAA0058342.14.3e-2949.42hypothetical protein E6C27_scaffold409G00280 [Cucumis melo var. makuwa][more]
KAA0038004.13.2e-2432.91transposase-like protein [Cucumis melo var. makuwa][more]
KAA0057657.12.1e-2331.11transposase [Cucumis melo var. makuwa][more]
TYK30621.11.7e-2245.51transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G01440.1CSPI05G01440.1mRNA