CSPI05G01420 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G01420
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Clavata3/esr-related 16, putative
Location	Chr5: 1992565 .. 1993267 (+)
RNA-Seq Expression	CSPI05G01420
Synteny	CSPI05G01420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAGAAAAAAGAAAACATATAAGAAGGTTCTCAAGAATCCAAGAGAGGGTCAGAAATCATGTGGGTTAGACCCATGATATAAGGAGGAATACACACACCCAACCTCTCCTCTCTCTCATTTTCATTCTTCACCATTTCTGCTTCCATTTCCAAAACTCTTCAAAATCACAAAAACAAAAAACAAACAAAAAAGAAAACAATTTTTTTTTGGAGGGTGTGGTGGTTTCGTGGCAATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAGGCCTAATACGGCCCAACAACAACATTCCCATATCTGTTTATTCTTCTACAGATCAATTTCTTCTGTAAGAGAAGCTTTCAATTATTACTATTTTCTTTTTAATTATTTAGAAGTTTGAAGAGAAATAAGATCATTAGGC

mRNA sequence

AAAAGAAAAAAGAAAACATATAAGAAGGTTCTCAAGAATCCAAGAGAGGGTCAGAAATCATGTGGGTTAGACCCATGATATAAGGAGGAATACACACACCCAACCTCTCCTCTCTCTCATTTTCATTCTTCACCATTTCTGCTTCCATTTCCAAAACTCTTCAAAATCACAAAAACAAAAAACAAACAAAAAAGAAAACAATTTTTTTTTGGAGGGTGTGGTGGTTTCGTGGCAATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAGGCCTAATACGGCCCAACAACAACATTCCCATATCTGTTTATTCTTCTACAGATCAATTTCTTCTGTAAGAGAAGCTTTCAATTATTACTATTTTCTTTTTAATTATTTAGAAGTTTGAAGAGAAATAAGATCATTAGGC

Coding sequence (CDS)

ATGAGAGTGGGTGTGGAGAGAGGAAGAAACGGCGGTAAGGGAAGGAAAGGGGAAGCAGGAGCCGTGGCTGCAATTTTCTTCATATGGCTAATTTTGGTGGTGTCTCGAATGAGATTATCGTCTGCCGCCAGTAAAGAAGTTAACGGCCGGATGTTAACAAAATCCACCGTCCTCCACCGTAAGACTCATATTTTCGAAACGGAGGAGGTGTTTAAACCGCCAGCGGGTTTCAAAGTCCACGGCGGAGGAGAAAACGACGACGTTACGGACATTGTATACGAAGATGATAAACGGGTGATCCATACCGGCCCAAATCCACTTCACAATTAG

Protein sequence

MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN*

Homology

[Close]

BLAST of CSPI05G01420 vs. ExPASy Swiss-Prot
Match: Q8S8M2 (CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 PE=2 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 30/87 (34.48%), Postives = 44/87 (50.57%), Query Frame = 0


Query: 23  AAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRKTHIFETEEVFKPPAGFKVHGG 82
           AA+FF   I V ++  +SS+A    +       ++  +  H  E      P A     G 
Sbjct: 22  AAVFFCG-IFVFAQFGISSSALFAPD----HYPSLPRKAGHFHEMASFQAPKATVSFTGQ 81

Query: 83  GENDDVTDIVYEDDKRVIHTGPNPLHN 110
              ++  D VY+DDKR++HTGPNPLHN
Sbjct: 82  RREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of CSPI05G01420 vs. ExPASy TrEMBL
Match: A0A0A0KIX6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 6.1e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of CSPI05G01420 vs. ExPASy TrEMBL
Match: A0A5A7VBQ7 (Putative Clavata3/esr-related 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold19870G00010 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 103/109 (94.50%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNGGKGRK EAGAVAAIFFIWLIL+VSRMRLSSAA KEVN R L KSTVLHR
Sbjct: 1   MRVGVERGRNGGKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of CSPI05G01420 vs. ExPASy TrEMBL
Match: V4UGP5 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017256mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 1   MRVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLH 60
           M++ V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSA 60

Query: 61  RKTHIFETEEVF--KPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           RKT  F TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 61  RKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of CSPI05G01420 vs. ExPASy TrEMBL
Match: A0A067FB56 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-10
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 2   RVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 61
           R  V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   R
Sbjct: 13  RPQVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSAR 72

Query: 62  KTHIFETEEVF--KPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KT  F TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 73  KTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of CSPI05G01420 vs. ExPASy TrEMBL
Match: A0A2H5Q2V2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_190950 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.0e-09
Identity = 48/112 (42.86%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 1   MRVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLH 60
           M++ V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSA 60

Query: 61  RKTHIFETEEVF--KPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           RKT    TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 61  RKTRSVNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of CSPI05G01420 vs. NCBI nr
Match: KAA0063335.1 (putative Clavata3/esr-related 16 [Cucumis melo var. makuwa] >TYK03325.1 putative Clavata3/esr-related 16 [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 2.4e-50
Identity = 103/109 (94.50%), Postives = 104/109 (95.41%), Query Frame = 0


Query: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNGGKGRK EAGAVAAIFFIWLIL+VSRMRLSSAA KEVN R L KSTVLHR
Sbjct: 1   MRVGVERGRNGGKGRKREAGAVAAIFFIWLILLVSRMRLSSAAIKEVNVRALAKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 109

[Close]

BLAST of CSPI05G01420 vs. NCBI nr
Match: KAE8648231.1 (hypothetical protein Csa_018474 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 5.6e-47
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60
           MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR
Sbjct: 1   MRVGVERGRNGGKGRKGEAGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 60

Query: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRV 100
           KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKR+
Sbjct: 61  KTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRL 99

[Close]

BLAST of CSPI05G01420 vs. NCBI nr
Match: KAG6600814.1 (CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031451.1 CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 2.5e-34
Identity = 81/112 (72.32%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MRVGVERGRNGGKGRKGEAG---AVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTV 60
           MRVGVERGRNGG G K +AG     AAIFFI LI V+SRM LSSAA + VN   LTKS  
Sbjct: 1   MRVGVERGRNGGNGTKRQAGGAVVAAAIFFICLIFVLSRMTLSSAAVRGVNVPTLTKSAT 60

Query: 61  LHRKTHIFETEEVFKPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           LHRKTH+FETEEVFKPPAGFK+H      DV DIVYEDDKRV+HTGPNPLHN
Sbjct: 61  LHRKTHVFETEEVFKPPAGFKIHA-----DVADIVYEDDKRVVHTGPNPLHN 107

[Close]

BLAST of CSPI05G01420 vs. NCBI nr
Match: ESR61476.1 (hypothetical protein CICLE_v10017256mg [Citrus clementina])

HSP 1 Score: 75.5 bits (184), Expect = 3.2e-10
Identity = 49/112 (43.75%), Postives = 62/112 (55.36%), Query Frame = 0


Query: 1   MRVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLH 60
           M++ V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   
Sbjct: 1   MQMTVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSA 60

Query: 61  RKTHIFETEEVF--KPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           RKT  F TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 61  RKTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 109

[Close]

BLAST of CSPI05G01420 vs. NCBI nr
Match: KDO64624.1 (hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 49/111 (44.14%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 2   RVGVERGRNGGKGRKGE-AGAVAAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHR 61
           R  V R     +GR+   AGA AA FF W+IL+ S + L  A   +  G   T S+   R
Sbjct: 13  RPQVPRDVVSARGRRRRCAGAKAASFFFWVILIFSLLGLLCALHDDETG---TYSSFSAR 72

Query: 62  KTHIFETEEVF--KPPAGFKVHGGGENDDVTDIVYEDDKRVIHTGPNPLHN 110
           KT  F TE  F   PP+   +    E D+    VYEDDKR+IHTGPNPLHN
Sbjct: 73  KTRSFNTESTFHAPPPSISGLLVDTEADNPGSSVYEDDKRIIHTGPNPLHN 120

[Close]

BLAST of CSPI05G01420 vs. TAIR 10
Match: AT2G01505.1 (CLAVATA3/ESR-RELATED 16 )

HSP 1 Score: 47.4 bits (111), Expect = 8.8e-06
Identity = 30/87 (34.48%), Postives = 44/87 (50.57%), Query Frame = 0


Query: 23  AAIFFIWLILVVSRMRLSSAASKEVNGRMLTKSTVLHRKTHIFETEEVFKPPAGFKVHGG 82
           AA+FF   I V ++  +SS+A    +       ++  +  H  E      P A     G 
Sbjct: 22  AAVFFCG-IFVFAQFGISSSALFAPD----HYPSLPRKAGHFHEMASFQAPKATVSFTGQ 81

Query: 83  GENDDVTDIVYEDDKRVIHTGPNPLHN 110
              ++  D VY+DDKR++HTGPNPLHN
Sbjct: 82  RREEENRDEVYKDDKRLVHTGPNPLHN 103

[Close]

BLAST of CSPI05G01420 vs. TAIR 10
Match: AT1G70895.1 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 31/105 (29.52%), Postives = 48/105 (45.71%), Query Frame = 0


Query: 7   RGRNGGKGRKGEAGAVAAIFFIWLILVVS-RMRLSSAASKEVNGRMLTKSTVLHRKTHIF 66
           R +  GK R+ +       F  + +  VS ++ LSS+AS            V + + H+ 
Sbjct: 7   RRQGQGKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSAS------------VGYSRLHLV 66

Query: 67  ETEEVFKPPAGFKVHGGGENDDVT-DIVYEDDKRVIHTGPNPLHN 110
            +     P    +         ++ D +Y DDKRV+HTGPNPLHN
Sbjct: 67  ASPPPPPPRKALRYSTAPFRGPLSRDDIYGDDKRVVHTGPNPLHN 99

[Close]

BLAST of CSPI05G01420 vs. TAIR 10
Match: AT1G70895.2 (CLAVATA3/ESR-RELATED 17 )

HSP 1 Score: 43.5 bits (101), Expect = 1.3e-04
Identity = 31/105 (29.52%), Postives = 48/105 (45.71%), Query Frame = 0


Query: 7   RGRNGGKGRKGEAGAVAAIFFIWLILVVS-RMRLSSAASKEVNGRMLTKSTVLHRKTHIF 66
           R +  GK R+ +       F  + +  VS ++ LSS+AS            V + + H+ 
Sbjct: 7   RRQGQGKKRRWDVNMTMCFFLFFFVFYVSFQIVLSSSAS------------VGYSRLHLV 66

Query: 67  ETEEVFKPPAGFKVHGGGENDDVT-DIVYEDDKRVIHTGPNPLHN 110
            +     P    +         ++ D +Y DDKRV+HTGPNPLHN
Sbjct: 67  ASPPPPPPRKALRYSTAPFRGPLSRDDIYGDDKRVVHTGPNPLHN 99

The following BLAST results are available for this feature:

BLAST of CSPI05G01420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8M2	1.2e-04	34.48	CLAVATA3/ESR (CLE)-related protein 16 OS=Arabidopsis thaliana OX=3702 GN=CLE16 P...	[more]

BLAST of CSPI05G01420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIX6	6.1e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G060150 PE=4 SV=1	[more]
A0A5A7VBQ7	1.2e-50	94.50	Putative Clavata3/esr-related 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
V4UGP5	1.6e-10	43.75	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017256mg PE=4 ...	[more]
A0A067FB56	6.0e-10	44.14	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048706m...	[more]
A0A2H5Q2V2	1.0e-09	42.86	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_190950 PE=4 SV=1	[more]

BLAST of CSPI05G01420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063335.1	2.4e-50	94.50	putative Clavata3/esr-related 16 [Cucumis melo var. makuwa] >TYK03325.1 putative...	[more]
KAE8648231.1	5.6e-47	98.99	hypothetical protein Csa_018474 [Cucumis sativus]	[more]
KAG6600814.1	2.5e-34	72.32	CLAVATA3/ESR (CLE)-related protein 16, partial [Cucurbita argyrosperma subsp. so...	[more]
ESR61476.1	3.2e-10	43.75	hypothetical protein CICLE_v10017256mg [Citrus clementina]	[more]
KDO64624.1	1.2e-09	44.14	hypothetical protein CISIN_1g048706mg, partial [Citrus sinensis]	[more]

BLAST of CSPI05G01420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01505.1	8.8e-06	34.48	CLAVATA3/ESR-RELATED 16	[more]
AT1G70895.1	1.3e-04	29.52	CLAVATA3/ESR-RELATED 17	[more]
AT1G70895.2	1.3e-04	29.52	CLAVATA3/ESR-RELATED 17	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033249	CLAVATA3/ESR (CLE)-related protein, plant	PANTHER	PTHR34545	CLAVATA3/ESR (CLE)-RELATED PROTEIN 22	coord: 6..109
None	No IPR available	PANTHER	PTHR34545:SF7	CLAVATA3/ESR (CLE)-RELATED PROTEIN 16	coord: 6..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G01420.1	CSPI05G01420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048731	system development