CSPI05G00980 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI05G00980
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr5: 1278415 .. 1278886 (+)
RNA-Seq ExpressionCSPI05G00980
SyntenyCSPI05G00980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAAGTTCACTATTCATCATCTTCTTCCTCTCATCACACAAAACCAACCTTAGAAACCCTAGCCCCCGTCAAGGTTTTGCCGGGCGTTGCCTCCGTCCGACAGTCCTCAGGTGAAGCCTCGTCACCGTTTATCTTCCACCATCGACCGTCCTCGCAAGAATCTGGTCTCCGTCCCTGTCATCGTGAAGCAGCCGATGCAAGTCTTCCTCGTTCGTCCACACCTCCATCAGCCGCTCAACGTCGTTGTCTCCTTCACGCATGACATTCTCTACGTTGAAGTTCTCTCCATTTGTTGATGCATTGTCGTAGCTCCAGCCCCAACCACCACATCACCGAAGCCTTCGTCTGCAGTAACCGAGCTTCTTGACTCCATCCGAGTCAAATGCGAGCCACGTGCCCCCTCCCTACCAAACGCGAGTCGCACGCCTCCTCCATCCGTGAGCCATTTTCGAGCCAAACTCCCTTAA

mRNA sequence

ATGCTTCAAGTTCACTATTCATCATCTTCTTCCTCTCATCACACAAAACCAACCTTAGAAACCCTAGCCCCCGTCAAGGTTTTGCCGGGCGTTGCCTCCGTCCGACAGTCCTCAGGTGAAGCCTCGTCACCGTTTATCTTCCACCATCGACCGTCCTCGCAAGAATCTGGTCTCCGTCCCTGTCATCGTGAAGCAGCCGATGCAAGTCTTCCTCCTCCAGCCCCAACCACCACATCACCGAAGCCTTCGTCTGCAGTAACCGAGCTTCTTGACTCCATCCGAGTCAAATGCGAGCCACGTGCCCCCTCCCTACCAAACGCGAGTCGCACGCCTCCTCCATCCGTGAGCCATTTTCGAGCCAAACTCCCTTAA

Coding sequence (CDS)

ATGCTTCAAGTTCACTATTCATCATCTTCTTCCTCTCATCACACAAAACCAACCTTAGAAACCCTAGCCCCCGTCAAGGTTTTGCCGGGCGTTGCCTCCGTCCGACAGTCCTCAGGTGAAGCCTCGTCACCGTTTATCTTCCACCATCGACCGTCCTCGCAAGAATCTGGTCTCCGTCCCTGTCATCGTGAAGCAGCCGATGCAAGTCTTCCTCCTCCAGCCCCAACCACCACATCACCGAAGCCTTCGTCTGCAGTAACCGAGCTTCTTGACTCCATCCGAGTCAAATGCGAGCCACGTGCCCCCTCCCTACCAAACGCGAGTCGCACGCCTCCTCCATCCGTGAGCCATTTTCGAGCCAAACTCCCTTAA

Protein sequence

MLQVHYSSSSSSHHTKPTLETLAPVKVLPGVASVRQSSGEASSPFIFHHRPSSQESGLRPCHREAADASLPPPAPTTTSPKPSSAVTELLDSIRVKCEPRAPSLPNASRTPPPSVSHFRAKLP*
Homology
[Close]
BLAST of CSPI05G00980 vs. ExPASy TrEMBL
Match: A0A0A0KML1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G035750 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.1e-27
Identity = 72/85 (84.71%), Postives = 74/85 (87.06%), Query Frame = 0 

Query: 1  MLQVHYSSSSSSHHTKPTLETLAPVKVLPGVASVRQSSGEASSPFIFHHRPSSQESGLRP 60
          MLQVHYSSSSSSHHTK TLETLA VKV PGVASVRQSSGEASSPFIFHHRPSSQESGLRP
Sbjct: 1  MLQVHYSSSSSSHHTKLTLETLANVKVFPGVASVRQSSGEASSPFIFHHRPSSQESGLRP 60

Query: 61 CHREAADASLPPPAPTTTSPKPSSA 86
          CHREAADASLP      +S  PS+A
Sbjct: 61 CHREAADASLP-----RSSTPPSAA 80

[Close]
BLAST of CSPI05G00980 vs. NCBI nr
Match: KGN49637.1 (hypothetical protein Csa_018517 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-27
Identity = 72/85 (84.71%), Postives = 74/85 (87.06%), Query Frame = 0 

Query: 1  MLQVHYSSSSSSHHTKPTLETLAPVKVLPGVASVRQSSGEASSPFIFHHRPSSQESGLRP 60
          MLQVHYSSSSSSHHTK TLETLA VKV PGVASVRQSSGEASSPFIFHHRPSSQESGLRP
Sbjct: 1  MLQVHYSSSSSSHHTKLTLETLANVKVFPGVASVRQSSGEASSPFIFHHRPSSQESGLRP 60

Query: 61 CHREAADASLPPPAPTTTSPKPSSA 86
          CHREAADASLP      +S  PS+A
Sbjct: 61 CHREAADASLP-----RSSTPPSAA 80

The following BLAST results are available for this feature:
BLAST of CSPI05G00980 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI05G00980 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KML12.1e-2784.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G035750 PE=4 SV=1[more]
BLAST of CSPI05G00980 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49637.14.3e-2784.71hypothetical protein Csa_018517 [Cucumis sativus][more]
BLAST of CSPI05G00980 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G00980.1CSPI05G00980.1mRNA