CSPI04G27440 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G27440
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 24098913 .. 24099372 (-)
RNA-Seq ExpressionCSPI04G27440
SyntenyCSPI04G27440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGGTAAAATTTCCTCGTCAGTTCCACATTTTACATTCTCCACATGGAAAAACACTACCACTTTTGCATGTATATTTTCTAGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA

mRNA sequence

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA

Coding sequence (CDS)

ATGTGTGTCGTGGATTTGTATTTAACAGAACAGACTAATGGCTGTAGTCGGAACTTTTCATCATTTTGGTTGGCGGCTGTGTTCACTGTTGGCCGCTTGGTGGTGAATCTCGAACCCTTTATTACATTGGATTATATTTTCGTTTCACCAGTCGGTCACCGCGTGCCACTTTCATTCATTGTAAGCTCTTTCAGGGTAAAAAAATCTTTTATAAATAATTCTTTAAATGTGTCTGGACTTGGACCGGGACTTGGACCGGGACCTGGACCTGGACCTGGACCTGGACCACACCATTTCTTAATTGATCCAGGTATGTTCACGGTTGGTTCCAAAATTAGAGCTTATGCCGTTTTCTTTTCCATTTTCTTAAAGAAATTATAA

Protein sequence

MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFIVSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPGPHHFLIDPGMFTVGSKIRAYAVFFSIFLKKL*
Homology
[Close]
BLAST of CSPI04G27440 vs. ExPASy TrEMBL
Match: A0A0A0L0V1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665400 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPGPHHFLIDPGM 106
           VSSFRVKKSFINNSLNVSGLGPGL  GPGPGPGPGPHHFLIDPGM
Sbjct: 61  VSSFRVKKSFINNSLNVSGLGPGL--GPGPGPGPGPHHFLIDPGM 103

[Close]
BLAST of CSPI04G27440 vs. NCBI nr
Match: KGN55560.1 (hypothetical protein Csa_011976 [Cucumis sativus])

HSP 1 Score: 209.1 bits (531), Expect = 2.2e-50
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0 

Query: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60
           MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI
Sbjct: 1   MCVVDLYLTEQTNGCSRNFSSFWLAAVFTVGRLVVNLEPFITLDYIFVSPVGHRVPLSFI 60

Query: 61  VSSFRVKKSFINNSLNVSGLGPGLGPGPGPGPGPGPHHFLIDPGM 106
           VSSFRVKKSFINNSLNVSGLGPGL  GPGPGPGPGPHHFLIDPGM
Sbjct: 61  VSSFRVKKSFINNSLNVSGLGPGL--GPGPGPGPGPHHFLIDPGM 103

The following BLAST results are available for this feature:
BLAST of CSPI04G27440 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G27440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0V11.0e-5098.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G665400 PE=4 SV=1[more]
BLAST of CSPI04G27440 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55560.12.2e-5098.10hypothetical protein Csa_011976 [Cucumis sativus][more]
BLAST of CSPI04G27440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G27440.1CSPI04G27440.1mRNA