CSPI04G26950 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G26950
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 23872283 .. 23872968 (+)
RNA-Seq ExpressionCSPI04G26950
SyntenyCSPI04G26950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGGGCTTTGTGGTCAAGAAGGATCATGTAAGTGTTTTTGGGATCAATTAATTCTAATGCAGAAGCTCACAAGGTGGCCTAGACACTCATAGATATATATGTACTGTTAAGTTTGTCATGCGTCCTTGTTGGCCACAGCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTGTAGGCTTAAATTTGTTTTCTTTTGTTTTGCTAAAAGGATATGTGGAAGTACCACCTATTTCAAATGTTCTTTGGGGTTTCAAAATTTCCTTCTTTGAGATTTATTGTGATACTCCAGCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTGTTTTTTGGTGGTTCTTGATTAATTTACAGGTTTGAATTTTGTCTGAAATGTCTTTTTTCTTTATGTGCAGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTGTAAGCTACCTTCGTTTCTGTTTTATTGACTCCGAATTGTTCTCTCTGCTTTCTTTCACGATTGTTGATTTTTTTCGTTAGTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

mRNA sequence

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Coding sequence (CDS)

ATGAGTGGGCTTTGTGGTCAAGAAGGATCATCAAAAACACTTCCCAGAGTGTTGGTTTGGCATAGGAATATTCCTTTGGGATTCTTGAGTTTTCTCTGGATCATTCTATTGCATTCGGGGTTTTGTGAATCTCTTTCTATTGTGGCTGTCCAATCCACTGATTCCACCTTGGGCTGGGATGGTATATTAAATCCTTGGGGTCACTTTGAAGGCGTTCTTGTGCTTTGTGGATCACTGTCGCTGTCATCAACCGCTCAAATTGAATGCTCTGATTCTAAATTTATGTCATTTAGTATTTGGTAA

Protein sequence

MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWDGILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW*
Homology
[Close]
BLAST of CSPI04G26950 vs. ExPASy TrEMBL
Match: A0A0A0L0R3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663640 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.8e-52
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

[Close]
BLAST of CSPI04G26950 vs. NCBI nr
Match: KGN55505.1 (hypothetical protein Csa_012178 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60
           MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD
Sbjct: 1   MSGLCGQEGSSKTLPRVLVWHRNIPLGFLSFLWIILLHSGFCESLSIVAVQSTDSTLGWD 60

Query: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 101
           GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW
Sbjct: 61  GILNPWGHFEGVLVLCGSLSLSSTAQIECSDSKFMSFSIW 100

The following BLAST results are available for this feature:
BLAST of CSPI04G26950 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G26950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0R35.8e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G663640 PE=4 SV=1[more]
BLAST of CSPI04G26950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55505.11.2e-51100.00hypothetical protein Csa_012178 [Cucumis sativus][more]
BLAST of CSPI04G26950 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G26950.1CSPI04G26950.1mRNA