CSPI04G26450 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G26450
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 23564894 .. 23565330 (-)
RNA-Seq ExpressionCSPI04G26450
SyntenyCSPI04G26450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCGCCTTCAACAATCCAAATCCAATTCTCATATCCCCCTATAAAGCCAAGAGACTAATTATTCTTTAATGAAACAAATTATTCTCTTCCTTTCTATTGAAGCATTCATTATTTGCTTTACACTCCACACCATGGAAATTAACTCAAAGGATTCATCTATCCAAGTTCTTCGTTGTCCTCAAGATGGTTCTAAGAACGCCATACCTTGCAGACCTCCAAACAAACAAAAACAAAGCCTAAACAAGGCCAAGGTGGTTAAGTTTCAAGTGACAAGTTCACTCTGTAATACAAAAGAGCGAATTTTTTACGCCGGAACCTCTACCTTTGGTATCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGACTGGTCTGTTTAGATCAACTATAGATGGAAGTACTCAGAACTCACGGACACACATGTAG

mRNA sequence

ACCGCCTTCAACAATCCAAATCCAATTCTCATATCCCCCTATAAAGCCAAGAGACTAATTATTCTTTAATGAAACAAATTATTCTCTTCCTTTCTATTGAAGCATTCATTATTTGCTTTACACTCCACACCATGGAAATTAACTCAAAGGATTCATCTATCCAAGTTCTTCGTTGTCCTCAAGATGGTTCTAAGAACGCCATACCTTGCAGACCTCCAAACAAACAAAAACAAAGCCTAAACAAGGCCAAGGTGGTTAAGTTTCAAGTGACAAGTTCACTCTGTAATACAAAAGAGCGAATTTTTTACGCCGGAACCTCTACCTTTGGTATCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGACTGGTCTGTTTAGATCAACTATAGATGGAAGTACTCAGAACTCACGGACACACATGTAG

Coding sequence (CDS)

ATGAAACAAATTATTCTCTTCCTTTCTATTGAAGCATTCATTATTTGCTTTACACTCCACACCATGGAAATTAACTCAAAGGATTCATCTATCCAAGTTCTTCGTTGTCCTCAAGATGGTTCTAAGAACGCCATACCTTGCAGACCTCCAAACAAACAAAAACAAAGCCTAAACAAGGCCAAGGTGGTTAAGTTTCAAGTGACAAGTTCACTCTGTAATACAAAAGAGCGAATTTTTTACGCCGGAACCTCTACCTTTGGTATCTCACCACCACCAAGTTCTATACCTCTACCCACTTTTGTAATGAAGACTGGTCTGTTTAGATCAACTATAGATGGAAGTACTCAGAACTCACGGACACACATGTAG

Protein sequence

MKQIILFLSIEAFIICFTLHTMEINSKDSSIQVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYAGTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRTHM*
Homology
[Close]
BLAST of CSPI04G26450 vs. ExPASy TrEMBL
Match: A0A0A0L158 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652660 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.3e-49
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 22  MEINSKDSSIQVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 81
           MEINSKDSSI VLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA
Sbjct: 1   MEINSKDSSIHVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 60

Query: 82  GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRTHM 123
           GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRTHM
Sbjct: 61  GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRTHM 101

[Close]
BLAST of CSPI04G26450 vs. ExPASy TrEMBL
Match: A0A5D3D8T1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001030 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-31
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0 

Query: 22  MEINSKDSSIQVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 81
           MEI+SK    QV RCPQ+G+ NAI  RPP+KQK+SLNK + V  QVTSSLCNT ER+FYA
Sbjct: 1   MEIHSK----QVRRCPQNGTINAISYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYA 60

Query: 82  GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRT 121
           GTSTF +SPPPSSIPLPTFVMK GLFRST DGST+NSRT
Sbjct: 61  GTSTFAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRT 95

[Close]
BLAST of CSPI04G26450 vs. NCBI nr
Match: KGN55453.1 (hypothetical protein Csa_012035 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 6.7e-49
Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0 

Query: 22  MEINSKDSSIQVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 81
           MEINSKDSSI VLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA
Sbjct: 1   MEINSKDSSIHVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 60

Query: 82  GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRTHM 123
           GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRTHM
Sbjct: 61  GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRTHM 101

[Close]
BLAST of CSPI04G26450 vs. NCBI nr
Match: KAA0064603.1 (hypothetical protein E6C27_scaffold255G003250 [Cucumis melo var. makuwa] >TYK19987.1 hypothetical protein E5676_scaffold134G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.9e-31
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0 

Query: 22  MEINSKDSSIQVLRCPQDGSKNAIPCRPPNKQKQSLNKAKVVKFQVTSSLCNTKERIFYA 81
           MEI+SK    QV RCPQ+G+ NAI  RPP+KQK+SLNK + V  QVTSSLCNT ER+FYA
Sbjct: 1   MEIHSK----QVRRCPQNGTINAISYRPPHKQKRSLNKDRGVTLQVTSSLCNTNERLFYA 60

Query: 82  GTSTFGISPPPSSIPLPTFVMKTGLFRSTIDGSTQNSRT 121
           GTSTF +SPPPSSIPLPTFVMK GLFRST DGST+NSRT
Sbjct: 61  GTSTFAVSPPPSSIPLPTFVMKPGLFRSTTDGSTRNSRT 95

The following BLAST results are available for this feature:
BLAST of CSPI04G26450 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G26450 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1583.3e-4999.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652660 PE=4 SV=1[more]
A0A5D3D8T12.4e-3174.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI04G26450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55453.16.7e-4999.01hypothetical protein Csa_012035 [Cucumis sativus][more]
KAA0064603.14.9e-3174.75hypothetical protein E6C27_scaffold255G003250 [Cucumis melo var. makuwa] >TYK199... [more]
BLAST of CSPI04G26450 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G26450.1CSPI04G26450.1mRNA