CSPI04G26440 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G26440
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L39
LocationChr4: 23563721 .. 23564494 (+)
RNA-Seq ExpressionCSPI04G26440
SyntenyCSPI04G26440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATATCGATTACCCTTCTCAAGGGAGGGTATAAAGGTTCTTCGCTCCTGATAGGGTTTTTGTTTATCTCGCCGTCGATCGCCGGAACCCGAAGATGGTACGTATCGTTATTCGACTCTGAACTTTTTCTCTACGTAAAACTGGTGCTATTCATTGTTCTCTAATTGATGATTGTTGAACTTCTGCGAGTTTGTAATTCGATTTTTCTCTTCTCTTCCAATACACAGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTAAGAACCGACAACACGATCAGGTATTAAGCCTAAATGATATTTGAATCTGCATATTTTTATTTGAATCTCTCCCTCTCGTATTCATTTTGACGTTGTAATTTGTTCGATCGTGTTATAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGACTCCTAACTTCAATGTTCATTTAGCTTGATTTTGTTAAGTTTCAGAACTTGAACTTTCTTAAGGATCTACATTTGTATTTCCGCAACTGAAATTTAGTTTATCGGAAACTTTTGTTTAATCATCGTTACACTCAAGATTGAAGTGCTTTGGAATAGAGTGAATTTTCCATCAACTTTTATGTCTTTAGAGTAGCATTTTTGGCGAACCTTTACGGCATTTACTTCTTCATTTCTACGACATTTATCAAAGTTGGTGATTCTTGACAAAATTCCATTTAAATTTACA

mRNA sequence

AATATCGATTACCCTTCTCAAGGGAGGGTATAAAGGTTCTTCGCTCCTGATAGGGTTTTTGTTTATCTCGCCGTCGATCGCCGGAACCCGAAGATGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTAAGAACCGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGAGGTGCTTTCGACTCCTAACTTCAATGTTCATTTAGCTTGATTTTGTTAAGTTTCAGAACTTGAACTTTCTTAAGGATCTACATTTGTATTTCCGCAACTGAAATTTAGTTTATCGGAAACTTTTGTTTAATCATCGTTACACTCAAGATTGAAGTGCTTTGGAATAGAGTGAATTTTCCATCAACTTTTATGTCTTTAGAGTAGCATTTTTGGCGAACCTTTACGGCATTTACTTCTTCATTTCTACGACATTTATCAAAGTTGGTGATTCTTGACAAAATTCCATTTAAATTTACA

Coding sequence (CDS)

ATGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTAAGAACCGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGA

Protein sequence

MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF*
Homology
[Close]
BLAST of CSPI04G26440 vs. ExPASy Swiss-Prot
Match: Q6KAJ8 (60S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy Swiss-Prot
Match: P51426 (60S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B PE=3 SV=2)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy Swiss-Prot
Match: P51425 (60S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-22
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy Swiss-Prot
Match: Q5SMI4 (60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.1e-22
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFQIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy Swiss-Prot
Match: P51424 (60S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 5.3e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy TrEMBL
Match: A0A6J1HZ80 (60S ribosomal protein L39 OS=Cucurbita maxima OX=3661 GN=LOC111467947 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy TrEMBL
Match: A0A0A0LYE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy TrEMBL
Match: A0A1S3BCZ7 (60S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy TrEMBL
Match: A0A6J1C1Z7 (60S ribosomal protein L39 OS=Momordica charantia OX=3673 GN=LOC111007536 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. ExPASy TrEMBL
Match: A0A6J1F9G6 (60S ribosomal protein L39 OS=Cucurbita moschata OX=3662 GN=LOC111443316 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. NCBI nr
Match: XP_022962571.1 (uncharacterized protein LOC111462968 [Cucurbita moschata])

HSP 1 Score: 109.4 bits (272), Expect = 9.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
           MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 80  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 130

[Close]
BLAST of CSPI04G26440 vs. NCBI nr
Match: PON37200.1 (Ribosomal protein [Trema orientale] >PON38027.1 Ribosomal protein [Parasponia andersonii])

HSP 1 Score: 109.4 bits (272), Expect = 9.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 21 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 71

[Close]
BLAST of CSPI04G26440 vs. NCBI nr
Match: KAG7024434.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 9.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 37 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 87

[Close]
BLAST of CSPI04G26440 vs. NCBI nr
Match: KAG6585491.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020407.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 9.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 33 MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 83

[Close]
BLAST of CSPI04G26440 vs. NCBI nr
Match: KAG7029487.1 (60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 9.6e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0 

Query: 1   MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
           MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 69  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 119

[Close]
BLAST of CSPI04G26440 vs. TAIR 10
Match: AT4G31985.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 104.0 bits (258), Expect = 3.7e-23
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. TAIR 10
Match: AT3G02190.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-21
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 0 

Query: 1  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Sbjct: 1  MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51

[Close]
BLAST of CSPI04G26440 vs. TAIR 10
Match: AT2G25210.1 (Ribosomal protein L39 family protein )

HSP 1 Score: 90.9 bits (224), Expect = 3.3e-19
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0 

Query: 9  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 52
          IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 2  IKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 44

The following BLAST results are available for this feature:
BLAST of CSPI04G26440 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6KAJ81.1e-2296.0860S ribosomal protein L39-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39A P... [more]
P514261.1e-2296.0860S ribosomal protein L39-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39B P... [more]
P514251.1e-2296.0860S ribosomal protein L39 OS=Zea mays OX=4577 GN=RPL39 PE=3 SV=1[more]
Q5SMI43.1e-2294.1260S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL39C P... [more]
P514245.3e-2294.1260S ribosomal protein L39-1 OS=Arabidopsis thaliana OX=3702 GN=RPL39A PE=3 SV=2[more]
BLAST of CSPI04G26440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HZ804.6e-21100.0060S ribosomal protein L39 OS=Cucurbita maxima OX=3661 GN=LOC111467947 PE=3 SV=1[more]
A0A0A0LYE14.6e-21100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G568530 PE=3 SV=1[more]
A0A1S3BCZ74.6e-21100.0060S ribosomal protein L39 OS=Cucumis melo OX=3656 GN=LOC103488337 PE=3 SV=1[more]
A0A6J1C1Z74.6e-21100.0060S ribosomal protein L39 OS=Momordica charantia OX=3673 GN=LOC111007536 PE=3 SV... [more]
A0A6J1F9G64.6e-21100.0060S ribosomal protein L39 OS=Cucurbita moschata OX=3662 GN=LOC111443316 PE=3 SV=... [more]
BLAST of CSPI04G26440 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022962571.19.6e-21100.00uncharacterized protein LOC111462968 [Cucurbita moschata][more]
PON37200.19.6e-21100.00Ribosomal protein [Trema orientale] >PON38027.1 Ribosomal protein [Parasponia an... [more]
KAG7024434.19.6e-21100.0060S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6585491.19.6e-21100.0060S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia] >KAG7... [more]
KAG7029487.19.6e-21100.0060S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CSPI04G26440 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G31985.13.7e-2394.12Ribosomal protein L39 family protein [more]
AT3G02190.11.2e-2190.20Ribosomal protein L39 family protein [more]
AT2G25210.13.3e-1997.67Ribosomal protein L39 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000077Ribosomal protein L39ePFAMPF00832Ribosomal_L39coord: 28..68
e-value: 4.8E-22
score: 77.3
IPR023626Ribosomal protein L39e domain superfamilyGENE3D1.10.1620.10Ribosomal protein L39ecoord: 21..70
e-value: 2.5E-28
score: 99.8
IPR023626Ribosomal protein L39e domain superfamilySUPERFAMILY48662Ribosomal protein L39ecoord: 22..69
NoneNo IPR availablePANTHERPTHR19970:SF29SUBFAMILY NOT NAMEDcoord: 11..70
NoneNo IPR availablePANTHERPTHR19970RIBOSOMAL PROTEIN L39Ecoord: 11..70
IPR020083Ribosomal protein L39e, conserved sitePROSITEPS00051RIBOSOMAL_L39Ecoord: 49..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G26440.1CSPI04G26440.1mRNA
CSPI04G26440.2CSPI04G26440.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0008061 chitin binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0003735 structural constituent of ribosome