CSPI04G24190 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G24190
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 22051653 .. 22051856 (-)
RNA-Seq Expression	CSPI04G24190
Synteny	CSPI04G24190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGGGAGTGACGGTGGGGTGAGTATATCAGGACGCACAGGCGGTGGAGCAAAAGAGGAAAAATCACGTGAAAATCTGACATCTCTTTTACCGATATGGCGACGGCGCGGTGACGTCGTTTTTGTTAATCAAATACATTCCCTCCGCCGCATCCCATCATCGGCCACCGTGAAGAATACTCACACCCTTCTAACAAATTAA

mRNA sequence

ATGAAAGGGAGTGACGGTGGGGTGAGTATATCAGGACGCACAGGCGGTGGAGCAAAAGAGGAAAAATCACGTGAAAATCTGACATCTCTTTTACCGATATGGCGACGGCGCGGTGACGTCGTTTTTGTTAATCAAATACATTCCCTCCGCCGCATCCCATCATCGGCCACCGTGAAGAATACTCACACCCTTCTAACAAATTAA

Coding sequence (CDS)

ATGAAAGGGAGTGACGGTGGGGTGAGTATATCAGGACGCACAGGCGGTGGAGCAAAAGAGGAAAAATCACGTGAAAATCTGACATCTCTTTTACCGATATGGCGACGGCGCGGTGACGTCGTTTTTGTTAATCAAATACATTCCCTCCGCCGCATCCCATCATCGGCCACCGTGAAGAATACTCACACCCTTCTAACAAATTAA

Protein sequence

MKGSDGGVSISGRTGGGAKEEKSRENLTSLLPIWRRRGDVVFVNQIHSLRRIPSSATVKNTHTLLTN*

Homology

[Close]

BLAST of CSPI04G24190 vs. ExPASy TrEMBL
Match: A0A0A0L3L2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639895 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MKGSDGGVSISGRTGGGAKEEKSRENLTSLLPIWRRRGDVVFVNQIHSLRRIPSSATVKN 60
          MKGSDGGVSISGRTGGGAKEEKSRENLTSLLPIWRRRGDVVFVNQIHSLR IPSSATV N
Sbjct: 1  MKGSDGGVSISGRTGGGAKEEKSRENLTSLLPIWRRRGDVVFVNQIHSLRHIPSSATV-N 60

Query: 61 THTLLTN 68
          THTLLTN
Sbjct: 61 THTLLTN 66

[Close]

BLAST of CSPI04G24190 vs. NCBI nr
Match: KGN55202.1 (hypothetical protein Csa_012034 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0


Query: 1  MKGSDGGVSISGRTGGGAKEEKSRENLTSLLPIWRRRGDVVFVNQIHSLRRIPSSATVKN 60
          MKGSDGGVSISGRTGGGAKEEKSRENLTSLLPIWRRRGDVVFVNQIHSLR IPSSATV N
Sbjct: 1  MKGSDGGVSISGRTGGGAKEEKSRENLTSLLPIWRRRGDVVFVNQIHSLRHIPSSATV-N 60

Query: 61 THTLLTN 68
          THTLLTN
Sbjct: 61 THTLLTN 66

The following BLAST results are available for this feature:

BLAST of CSPI04G24190 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G24190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3L2	1.1e-25	97.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G639895 PE=4 SV=1	[more]

BLAST of CSPI04G24190 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55202.1	2.2e-25	97.01	hypothetical protein Csa_012034 [Cucumis sativus]	[more]

BLAST of CSPI04G24190 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G24190.1	CSPI04G24190.1	mRNA