CSPI04G23540 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G23540
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-type domain-containing protein
Location	Chr4: 21600584 .. 21601063 (-)
RNA-Seq Expression	CSPI04G23540
Synteny	CSPI04G23540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATCCATTACTCACACTTCTATTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGTCCTCCACTACACCGTAACGCTAGACATTCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGAAACGGAGGAGGCGGTGAGGACGTGGAGGCGGCAATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG

mRNA sequence

ATGGGAGATCCATTACTCACACTTCTATTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGTCCTCCACTACACCGTAACGCTAGACATTCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGAAACGGAGGAGGCGGTGAGGACGTGGAGGCGGCAATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG

Coding sequence (CDS)

ATGGGAGATCCATTACTCACACTTCTATTCCCCATGGAAACCATGGTCCCTGAATCTCCATCTCCTCCAGTCCTCCACTACACCGTAACGCTAGACATTCGAACCTCCATTATCTTCTCCTTCTCCATAATCCTCTTCTTCCTCTTCCTCTTCCACGTCCTCAGCGGCTTCCTCCAGTGGTTCCTCGACGTCCGGCGAAACGGAGGAGGCGGTGAGGACGTGGAGGCGGCAATGGCGGAGGAGCGGAGGTTGAAGCGGGCGGAGAAGTTGCCGTTGCCACCGACTGTGAGGTTTGGGAGCGAGAAAATGGTGAGGAGGAGGAGTGAGGAGGAATGCGCGATATGTTTGGAGGAGTTTTTGATCGGAGAAAATTGTCAGGCGTTGCCGGAGTGTAATCATTTTTTTCATTCGGAGTGTATTGATGTTTGGTTTAGCAAGAAATTTACGTGCCCCATCTGCCGTAATTGTGTTGCAGCTTAG

Protein sequence

MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQWFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA*

Homology

[Close]

BLAST of CSPI04G23540 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 34/102 (33.33%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 74  VEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRS------------------EEECAIC 133
           +  A+    R   +E +P   + R  S K +++++                  +EEC IC
Sbjct: 79  IRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVIC 138

Query: 134 LEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 158
           L +F+ GE  + LP+CNH FH  CID W  +  TCP CRNC+
Sbjct: 139 LSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

[Close]

BLAST of CSPI04G23540 vs. ExPASy Swiss-Prot
Match: Q9XF63 (RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-12
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 111 ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 158
           EC+ICL E + G+  + LP+CNH FH ECID+WF    TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of CSPI04G23540 vs. ExPASy Swiss-Prot
Match: Q9LS99 (RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.9e-12
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 110 EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 158
           EEC ICL +F+ GE  + LP+CNH FH  CID W ++  TCP CR+C+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of CSPI04G23540 vs. ExPASy Swiss-Prot
Match: P0C035 (RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.2e-11
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 111 ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
           ECA+CL + + G+  + LP CNH FH +CID+WF    TCP+CRN V +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

[Close]

BLAST of CSPI04G23540 vs. ExPASy Swiss-Prot
Match: O64763 (E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.8e-11
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 73  DVEAAMAEERRLKR----AEKLPLPPTVRFGSEKMVR-RRSEEECAICLEEFLIGENCQA 132
           D E+ +   RRL      AE +   PT  +   K VR  +   ECA+CL EF   E  + 
Sbjct: 91  DAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRL 150

Query: 133 LPECNHFFHSECIDVWFSKKFTCPICR 155
           +P C H FH++C+DVW S+  TCP+CR
Sbjct: 151 MPPCCHVFHADCVDVWLSEHSTCPLCR 177

[Close]

BLAST of CSPI04G23540 vs. ExPASy TrEMBL
Match: A0A0A0L062 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
           IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
Sbjct: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of CSPI04G23540 vs. ExPASy TrEMBL
Match: A0A5A7VAT0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00330 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.2e-81
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 40  MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 99

Query: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 100 FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 159

Query: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
            GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 160 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of CSPI04G23540 vs. ExPASy TrEMBL
Match: A0A5D3D9M0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003920 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.2e-81
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
            GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of CSPI04G23540 vs. ExPASy TrEMBL
Match: A0A1S3BVC7 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.2e-81
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
            GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of CSPI04G23540 vs. ExPASy TrEMBL
Match: A0A6J1IG67 (RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 7.2e-65
Identity = 129/160 (80.62%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVL-HYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           M DPLLTLLFPMETMV ES SPPV+ HYTVTLD+RTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEF 120
           WFL  RR G    DVEA M EERR++RAEK  +P  VRFGSE+MVRRRSEEECAICLEEF
Sbjct: 61  WFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEF 120

Query: 121 LIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
           + GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Sbjct: 121 MAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of CSPI04G23540 vs. NCBI nr
Match: XP_031740449.1 (RING-H2 finger protein ATL39-like [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 2.6e-85
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
           IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA
Sbjct: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of CSPI04G23540 vs. NCBI nr
Match: KAA0064334.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 40  MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 99

Query: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 100 FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 159

Query: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
            GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 160 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 198

[Close]

BLAST of CSPI04G23540 vs. NCBI nr
Match: XP_008453063.1 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 1.5e-80
Identity = 150/159 (94.34%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQW 60
           MGDPLLTLLFPMETMVPES SPPVLHYTVTLD+RTSIIFSFSIILFFLFLFHVLSGFLQW
Sbjct: 1   MGDPLLTLLFPMETMVPESSSPPVLHYTVTLDLRTSIIFSFSIILFFLFLFHVLSGFLQW 60

Query: 61  FLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEFL 120
           FLDVRR+GGG EDVEAAMAEERR+KRAEKLPLPPTV+FGSEKMVRRRSEEECAICLEEFL
Sbjct: 61  FLDVRRSGGGDEDVEAAMAEERRMKRAEKLPLPPTVKFGSEKMVRRRSEEECAICLEEFL 120

Query: 121 IGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
            GENCQALPEC+HFFHSECI+VWFSKKFTCPICRNCVAA
Sbjct: 121 AGENCQALPECSHFFHSECIEVWFSKKFTCPICRNCVAA 159

[Close]

BLAST of CSPI04G23540 vs. NCBI nr
Match: XP_022976597.1 (RING-H2 finger protein ATL39-like [Cucurbita maxima])

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 129/160 (80.62%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPPVL-HYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           M DPLLTLLFPMETMV ES SPPV+ HYTVTLD+RTSIIFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVIVHYTVTLDLRTSIIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEF 120
           WFL  RR G    DVEA M EERR++RAEK  +P  VRFGSE+MVRRRSEEECAICLEEF
Sbjct: 61  WFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEF 120

Query: 121 LIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
           + GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Sbjct: 121 MAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of CSPI04G23540 vs. NCBI nr
Match: XP_022936829.1 (RING-H2 finger protein ATL39-like [Cucurbita moschata])

HSP 1 Score: 255.0 bits (650), Expect = 4.3e-64
Identity = 128/160 (80.00%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 1   MGDPLLTLLFPMETMVPESPSPP-VLHYTVTLDIRTSIIFSFSIILFFLFLFHVLSGFLQ 60
           M DPLLTLLFPMETMV ES SPP V+HYTVTLD+RTS+IFS +IILFFLFL+HVLSGFLQ
Sbjct: 1   MADPLLTLLFPMETMVSESASPPVVVHYTVTLDLRTSMIFSVTIILFFLFLYHVLSGFLQ 60

Query: 61  WFLDVRRNGGGGEDVEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRSEEECAICLEEF 120
           WFL  RR G    DVEA M EERR++RAEK  +P  VRFGSE+MVRRRSEEECAICLEEF
Sbjct: 61  WFLSGRRGG----DVEAGMGEERRVRRAEK--MPAAVRFGSERMVRRRSEEECAICLEEF 120

Query: 121 LIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
           + GENCQALPECNHFFHS+CIDVWFSKKFTCPICR+C+AA
Sbjct: 121 MAGENCQALPECNHFFHSDCIDVWFSKKFTCPICRHCIAA 154

[Close]

BLAST of CSPI04G23540 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 7.5e-14
Identity = 34/102 (33.33%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 74  VEAAMAEERRLKRAEKLPLPPTVRFGSEKMVRRRS------------------EEECAIC 133
           +  A+    R   +E +P   + R  S K +++++                  +EEC IC
Sbjct: 79  IRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMFPVVSYSPEMNLPGLDEECVIC 138

Query: 134 LEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 158
           L +F+ GE  + LP+CNH FH  CID W  +  TCP CRNC+
Sbjct: 139 LSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCRNCL 180

[Close]

BLAST of CSPI04G23540 vs. TAIR 10
Match: AT1G72310.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-13
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 0


Query: 111 ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 158
           EC+ICL E + G+  + LP+CNH FH ECID+WF    TCPICRN V
Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTV 172

[Close]

BLAST of CSPI04G23540 vs. TAIR 10
Match: AT3G18773.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 6.3e-13
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 110 EECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCV 158
           EEC ICL +F+ GE  + LP+CNH FH  CID W ++  TCP CR+C+
Sbjct: 128 EECVICLSDFVAGEQLRVLPKCNHGFHLRCIDKWLTQHMTCPKCRHCL 175

[Close]

BLAST of CSPI04G23540 vs. TAIR 10
Match: AT1G53820.1 (RING/U-box superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 8.3e-13
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 0


Query: 111 ECAICLEEFLIGENCQALPECNHFFHSECIDVWFSKKFTCPICRNCVAA 160
           ECA+CL + + G+  + LP CNH FH +CID+WF    TCP+CRN V +
Sbjct: 119 ECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGS 167

[Close]

BLAST of CSPI04G23540 vs. TAIR 10
Match: AT2G35000.1 (RING/U-box superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.1e-12
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 0


Query: 73  DVEAAMAEERRLKR----AEKLPLPPTVRFGSEKMVR-RRSEEECAICLEEFLIGENCQA 132
           D E+ +   RRL      AE +   PT  +   K VR  +   ECA+CL EF   E  + 
Sbjct: 91  DAESQVVRIRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRL 150

Query: 133 LPECNHFFHSECIDVWFSKKFTCPICR 155
           +P C H FH++C+DVW S+  TCP+CR
Sbjct: 151 MPPCCHVFHADCVDVWLSEHSTCPLCR 177

The following BLAST results are available for this feature:

BLAST of CSPI04G23540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C034	1.1e-12	33.33	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q9XF63	3.1e-12	59.57	RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1	[more]
Q9LS99	8.9e-12	54.17	RING-H2 finger protein ATL77 OS=Arabidopsis thaliana OX=3702 GN=ATL77 PE=2 SV=1	[more]
P0C035	1.2e-11	51.02	RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1	[more]
O64763	5.8e-11	40.23	E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana OX=3702 GN=ATL9 PE=1 SV...	[more]

BLAST of CSPI04G23540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L062	1.3e-85	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637730 P...	[more]
A0A5A7VAT0	7.2e-81	94.34	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D9M0	7.2e-81	94.34	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BVC7	7.2e-81	94.34	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103493886 PE=4 S...	[more]
A0A6J1IG67	7.2e-65	80.63	RING-H2 finger protein ATL39-like OS=Cucurbita maxima OX=3661 GN=LOC111476945 PE...	[more]

BLAST of CSPI04G23540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740449.1	2.6e-85	100.00	RING-H2 finger protein ATL39-like [Cucumis sativus]	[more]
KAA0064334.1	1.5e-80	94.34	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
XP_008453063.1	1.5e-80	94.34	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYK20253.1 RING-H2 ...	[more]
XP_022976597.1	1.5e-64	80.63	RING-H2 finger protein ATL39-like [Cucurbita maxima]	[more]
XP_022936829.1	4.3e-64	80.00	RING-H2 finger protein ATL39-like [Cucurbita moschata]	[more]

BLAST of CSPI04G23540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49220.1	7.5e-14	33.33	RING/U-box superfamily protein	[more]
AT1G72310.1	2.2e-13	59.57	RING/U-box superfamily protein	[more]
AT3G18773.1	6.3e-13	54.17	RING/U-box superfamily protein	[more]
AT1G53820.1	8.3e-13	51.02	RING/U-box superfamily protein	[more]
AT2G35000.1	4.1e-12	40.23	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 112..153 e-value: 1.3E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 111..154 e-value: 4.9E-13 score: 49.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 112..154 score: 12.371254
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 72..158 e-value: 7.6E-19 score: 69.2
None	No IPR available	PANTHER	PTHR14155:SF493	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 80..157
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 80..157
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 111..154 e-value: 7.4164E-16 score: 65.4009
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 107..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G23540.1	CSPI04G23540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane