CSPI04G23440 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G23440
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDynamin-related protein 5A
LocationChr4: 21539692 .. 21540328 (-)
RNA-Seq ExpressionCSPI04G23440
SyntenyCSPI04G23440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACTCGAATTTCGACTGTTATTCCTCGATTTCACTTCCAAGTACCCGAAGTATTTCAATTTTCTGTCCTTGGCGGCACAACGCAATGTAAGTATATCCTCATCTTGAGGTACTTCTAAATCGCAATCTCTCTAGAAGCGTCAGGAGTAATGAATATGAAAAGCAAGTTTTGATGAGTTCAAAAGTGCGGGTCAATCACTTTGTTGTCTCACTTCACCTGCATCAATGCTAGAAACTCAACTCCCTGATTATTTCACTTGTGAGAGCATATTGAAAGTGTGTTATTTTCCTGTTTAGGATCGTGCAGTTCTTCTCGATTTACATATTATGTAAAATAGAAGCTAATTTTCCTATTGAGATAACTTATTATTTCAATTGTTCCGTTGGCTTTTCCTATTGTTCTAGAAGTCTATAAGATCAAATAAGATAGCTACCAAATGTTGAAAACAAACAAAGGGGAGTTACTGATCTGTTCTCCTCATCCTGTTGTACATTTATCAAACTGTAGGACCATGATATTTCTTGATTGCAGGACAACGTTACTGGCAGTATGTTAATGCCATCATCATCTGAGTATGGACAACAATTTGATTTTGGCAATTCTTTTTCCACAATCCCAACCAGAATTAGTTGA

mRNA sequence

ATGGAACTCGAATTTCGACTGTTATTCCTCGATTTCACTTCCAAGTACCCGAAGTATTTCAATTTTCTGTCCTTGGCGGCACAACGCAATGACAACGTTACTGGCAGTATGTTAATGCCATCATCATCTGAGTATGGACAACAATTTGATTTTGGCAATTCTTTTTCCACAATCCCAACCAGAATTAGTTGA

Coding sequence (CDS)

ATGGAACTCGAATTTCGACTGTTATTCCTCGATTTCACTTCCAAGTACCCGAAGTATTTCAATTTTCTGTCCTTGGCGGCACAACGCAATGACAACGTTACTGGCAGTATGTTAATGCCATCATCATCTGAGTATGGACAACAATTTGATTTTGGCAATTCTTTTTCCACAATCCCAACCAGAATTAGTTGA

Protein sequence

MELEFRLLFLDFTSKYPKYFNFLSLAAQRNDNVTGSMLMPSSSEYGQQFDFGNSFSTIPTRIS*
Homology
[Close]
BLAST of CSPI04G23440 vs. ExPASy TrEMBL
Match: A0A5A7VEK4 (Dynamin-related protein 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold255G00240 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.0e-09
Identity = 48/78 (61.54%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 1   MELEFRLLFLDFTSKY-------PKYFNFLSL--------AAQRNDNVTGSMLMPSSSEY 60
           MELEFRLLFLDFTSKY       P   N + +         +   DNVTGSMLMP SSEY
Sbjct: 825 MELEFRLLFLDFTSKYRSISIFRPWRHNAMQVYPHLEDHDISSLQDNVTGSMLMP-SSEY 884

Query: 61  GQQFDFGNSFSTIPTRIS 64
           G QFDFG SFSTIPTRIS
Sbjct: 885 G-QFDFGCSFSTIPTRIS 900

[Close]
BLAST of CSPI04G23440 vs. ExPASy TrEMBL
Match: A0A5D3D9M6 (Dynamin-related protein 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004010 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.9e-09
Identity = 47/78 (60.26%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 1   MELEFRLLFLDFTSKY-------PKYFNFLSL--------AAQRNDNVTGSMLMPSSSEY 60
           M+LEFRLLFLDFTSKY       P   N + +         +   DNVTGSMLMP SSEY
Sbjct: 825 MKLEFRLLFLDFTSKYRSISIFRPWRHNAMQVYPHLEDHDISSLQDNVTGSMLMP-SSEY 884

Query: 61  GQQFDFGNSFSTIPTRIS 64
           G QFDFG SFSTIPTRIS
Sbjct: 885 G-QFDFGCSFSTIPTRIS 900

[Close]
BLAST of CSPI04G23440 vs. NCBI nr
Match: KAE8649840.1 (hypothetical protein Csa_012114 [Cucumis sativus])

HSP 1 Score: 117.5 bits (293), Expect = 4.3e-23
Identity = 60/63 (95.24%), Postives = 61/63 (96.83%), Query Frame = 0 

Query: 1   MELEFRLLFLDFTSKYPKYFNFLSLAAQRNDNVTGSMLMPSSSEYGQQFDFGNSFSTIPT 60
           MELEFRLLFLDFTSKYPKYFNF SLAAQRNDNVTGSMLMPSSS+YG QFDFGNSFSTIPT
Sbjct: 814 MELEFRLLFLDFTSKYPKYFNFPSLAAQRNDNVTGSMLMPSSSKYG-QFDFGNSFSTIPT 873

Query: 61  RIS 64
           RIS
Sbjct: 874 RIS 875

[Close]
BLAST of CSPI04G23440 vs. NCBI nr
Match: KAA0064325.1 (dynamin-related protein 5A [Cucumis melo var. makuwa])

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-09
Identity = 48/78 (61.54%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 1   MELEFRLLFLDFTSKY-------PKYFNFLSL--------AAQRNDNVTGSMLMPSSSEY 60
           MELEFRLLFLDFTSKY       P   N + +         +   DNVTGSMLMP SSEY
Sbjct: 825 MELEFRLLFLDFTSKYRSISIFRPWRHNAMQVYPHLEDHDISSLQDNVTGSMLMP-SSEY 884

Query: 61  GQQFDFGNSFSTIPTRIS 64
           G QFDFG SFSTIPTRIS
Sbjct: 885 G-QFDFGCSFSTIPTRIS 900

[Close]
BLAST of CSPI04G23440 vs. NCBI nr
Match: TYK20261.1 (dynamin-related protein 5A [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 6.1e-09
Identity = 47/78 (60.26%), Postives = 51/78 (65.38%), Query Frame = 0 

Query: 1   MELEFRLLFLDFTSKY-------PKYFNFLSL--------AAQRNDNVTGSMLMPSSSEY 60
           M+LEFRLLFLDFTSKY       P   N + +         +   DNVTGSMLMP SSEY
Sbjct: 825 MKLEFRLLFLDFTSKYRSISIFRPWRHNAMQVYPHLEDHDISSLQDNVTGSMLMP-SSEY 884

Query: 61  GQQFDFGNSFSTIPTRIS 64
           G QFDFG SFSTIPTRIS
Sbjct: 885 G-QFDFGCSFSTIPTRIS 900

The following BLAST results are available for this feature:
BLAST of CSPI04G23440 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G23440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VEK41.0e-0961.54Dynamin-related protein 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5D3D9M62.9e-0960.26Dynamin-related protein 5A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
BLAST of CSPI04G23440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649840.14.3e-2395.24hypothetical protein Csa_012114 [Cucumis sativus][more]
KAA0064325.12.1e-0961.54dynamin-related protein 5A [Cucumis melo var. makuwa][more]
TYK20261.16.1e-0960.26dynamin-related protein 5A [Cucumis melo var. makuwa][more]
BLAST of CSPI04G23440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G23440.1CSPI04G23440.1mRNA