CSPI04G23160 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G23160
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 21314772 .. 21315528 (-)
RNA-Seq ExpressionCSPI04G23160
SyntenyCSPI04G23160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCGTGCAAGATTCTCTATCGAAGATGCATCAAAAAATACGTTTTGGCGCCCTATTTTCCTCCCTTTTGAGCCTCTCAAGTTCATCATTGCTCACTGTATTTTCGACACTAGCAACATCATCAAATTGCTTCTGGTACGTCCTTAATACCTATTTTTCTGTTTCTCTTTCAAATTTTGAGTGTCATCTTCTTGTTTTTAAGTTTAGAAATTATGAATTTTGTTCTGAAAATTGAAAATTGACCTTAAAAACTTGAGGAAAAACCATCTAATTAGTTTAAAAATTCTGATCGAGTAATTGAAGACATCTCCGGCTAGAATTGATTAAACGAAATCCTTATAATATATATGAAGAATTCACAATCGTATTATGCTTGATTAATTTTGCTGGATGAAAATTTGGAGCCATTATATTCAAGCATCATTGAAAATTAGTAGAATAAAATGAAAACACCCCTCACTGTTTTTAGAGTTGGAATGTAGCACTTTTTAAGAGGCCGGGGTGAAATGACTACTCAAGAACCTTTTAGGTGATTGAGATTTAAAAAGTGTCATTTAAGCAATTTTTGGATGCTTTTGGTAGCCACAGTGACATGAACTTCTTGTTACAAAATGTGGTAAGGTAGCTAGTTCAAAATTTTTAAAGCATGCATTGAGTTGGATCCAAGTTTATTTGTTTTACTCTACACATTTTTGTTTTGCAGCTTCTCACTTATCAGTCTCCATTGAAGGTTTGTCAGCGAGCACTAACTTAA

mRNA sequence

ATGCGGCGTGCAAGATTCTCTATCGAAGATGCATCAAAAAATACGTTTTGGCGCCCTATTTTCCTCCCTTTTGAGCCTCTCAAGTTCATCATTGCTCACTGTATTTTCGACACTAGCAACATCATCAAATTGCTTCTGCTTCTCACTTATCAGTCTCCATTGAAGGTTTGTCAGCGAGCACTAACTTAA

Coding sequence (CDS)

ATGCGGCGTGCAAGATTCTCTATCGAAGATGCATCAAAAAATACGTTTTGGCGCCCTATTTTCCTCCCTTTTGAGCCTCTCAAGTTCATCATTGCTCACTGTATTTTCGACACTAGCAACATCATCAAATTGCTTCTGCTTCTCACTTATCAGTCTCCATTGAAGGTTTGTCAGCGAGCACTAACTTAA

Protein sequence

MRRARFSIEDASKNTFWRPIFLPFEPLKFIIAHCIFDTSNIIKLLLLLTYQSPLKVCQRALT*
Homology
[Close]
BLAST of CSPI04G23160 vs. NCBI nr
Match: KAE8649832.1 (hypothetical protein Csa_012296 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 9.8e-12
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 0 

Query: 20 IFLPFEPLKFIIAHCIFDTSNIIKLLLLLTYQSPLKVCQRALT 63
          +F   EPLKFIIAHCIFDTSNIIKLLLLLTYQSPLKVCQRALT
Sbjct: 10 LFSSLEPLKFIIAHCIFDTSNIIKLLLLLTYQSPLKVCQRALT 52

[Close]
BLAST of CSPI04G23160 vs. NCBI nr
Match: KAE8650144.1 (hypothetical protein Csa_010410 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 1  MRRARFSIEDASKNTFWRPIFLPFEPLKFIIAHCIFDTSNIIKLLL 47
          MR ARFS+ DAS+   + P   PFEPLKF IAHCIF  SNIIKLLL
Sbjct: 1  MRHARFSVGDASRLAAYFP---PFEPLKFTIAHCIFGASNIIKLLL 43

The following BLAST results are available for this feature:
BLAST of CSPI04G23160 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G23160 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G23160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649832.19.8e-1290.70hypothetical protein Csa_012296 [Cucumis sativus][more]
KAE8650144.11.8e-0567.39hypothetical protein Csa_010410 [Cucumis sativus][more]
BLAST of CSPI04G23160 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G23160.1CSPI04G23160.1mRNA