CSPI04G22780 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G22780
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ubiquitin domain-containing protein
Location	Chr4: 21028478 .. 21032096 (+)
RNA-Seq Expression	CSPI04G22780
Synteny	CSPI04G22780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCAGAGGGACTCAAAGCTTCGGCTTTTGACTTTTTGGACTCTCAGCGAACCTTCTTCCCTCTGTTCACTTTTTCCTTCCAAATCTGCCTTTCCTCTTCCTTCTCTTCTCACCCCTTTTCTTCTTTTTCTCTCCAAATTTTGTACTCTTTAATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGTGAGTTTATTCTTCAACTTACTTTTCCCATATTCTGATTGTTTTCCGAGATTCTTCTTCTGCCAAATGAAGGATTGTCACCTTTTTTCTCATGTTTAATTCTGGGCTTCTATTCGTTTTCAGTTCTATGATGAATTTGCAGTGACCCCACTTTGATGGAGTGGTTAATCGTGTTTGGGAAAAGTGTTTGTGGAATGCAAGATGGGAATTTGTTAATCTGAATTAGCTTTATTGTTAAGCGAATAGATTGTTGGCATTTTAGTCTGTGTGATTCACTGATTGCCTTTTGAGCTTGTAGTGAATGATTGGTCTTTTCTTGAGTGTAATTTGTGTTTTTATTGCCTTTTCGTTATAAGACATTTGGTTTTGAGCTTCTTTAGCTTGTAATTAATGGTCTTGAAGAGCTGAGATTCATTGGTTTTTTCATTTAGTTGTAGCAATTTATTTGATTGCTGAAGTTTTTAATTGGAAACTCTGTGGTCTTTGGTATTTTTTATCATCATTTTATTGGGATGCCAATTTAGGGCGGTTAGTTCTTTGTATCTCATACACCCCTGCAGTGATTGCTAAACATCTTTGAGCTAGTTGGCTGAGCACTTTTCTGTTGTTTGTTCATGGGCTCCTTTTTGTTACGCTTATTTTTCTTGTATGCCCTTGTAGTTCTTTCGTTTTTCTCAATGGAATTTTTAAAAAGTGTTGGTTCTGCTGATCTCCCTCGTGGAGTTGAGTTTTTAAAGCTGATATGATACTATTATTCAATGAAAGGATTGAAATGCTCATAGTAATTCTCATGGATTTGGGGAATTTGATGTTAACATTCGTCGCCAGCTTCTTATGTTGTAAAGTCGATGTGATTGGTTCTGTCATTGATTATCCATTTATTTTTCTAATGAAATTCAGCCTCTTCAACTTTATTTCTTCAATCATCGTTCTTTAGGTGTTAATCTCAAAAGTTATAAGGAACTTATAGGATCCTCTTAGTCACTTGAAGATTCTTTTTTGATTCAGGGTCTGTGAAAAAAATCCGGAAGCCTAAACCTTGGAAGAATCCCCAGCCAATAACAAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGGTAACACTGTAATGCCAATTTTTTGATCTTGCATAATATTTCTAGTCTTTGTAATTTATTGTTGACCTGATCTTGAACTTTATATCACATTTTATGTAAAGGGTAACTGAGACTAGAATGACCAAAAGAAGTTCTTCAATGCTCATGAAAATTTATGATTCAGAAAGATTGTTACACTGGTTTCGTGCTACTGATTATCTTCAAGAGCATTATGTGCAAAGATTTCCCAGTCTAGTTGGTCACGACTCATGAAAAGTAATCCTCTATATTTAGCATCGTGGCCTCTCAAAGAAACAGAAATTTTACTAGAAAGGAAGAGAATTTTGTATTATGGATCATCAAGAATTTAAGAGTGATCTCTATTTAAGACTATGCTGTCGAGCATTTTCCACCACCCTCATTTGTTTGAGCAGTTGTTAGCCAGGCTGATTGAGTCTATCAGAAAATGCTTTCTACTTAGGAGTATTAGTTGGTCAGTTCTTTAATTTAAAGGTTCACTACATATCTTCTAGTTTTGAACTGCAGATAGACAAGGCACATTAAGTCTTAGACCTCTAGTTAAATTACCATATAGTTCAGCAGAATGTACATCCTCAATGCCATTGATCTGTATAAAAATGCTCTGCTTCAATGTGTGCCCGATTCGAGGGTACAACTATGCATGAATGTGACCAATAGTTGAATAAAAGTGAGAAAAACAGGAATGAGTGTGCTAATAAACAACTTATATTACGTAATTGTAGCCATGGAATTGATGAAAGCTGCTTTAATGATAATGTGTAATGTAAACTTTCATTGGCTGGACTAGTGGTAGAAAAGGAGACATAATCTCAATAAATGACTAAGAAGTCATGGTTCAATCTAGGTAGCAATCTACCTAGGAATTAATTTTCTATGGATTTTCTTGACCCTCAAATGTTTAGGGTTAAATGGGTTATCCTATGAGTCGTTAGATCAGTCTACATGCGTAAGTTGGTCTGAACATTCACGAATATAAAAAAAATGGTAACGTGTAATGTAAAGTCGTCTTTTTCCTCAGCTTATCTACCCTCATTCACAAAGGAGCTGCTCTTTTGTACTGTGTCTCAGATAGAATGTTCTTTTATGATCTATTTCATCAATAAATGAGATGGTTTCTATTTCCTATGAAAGAAAATGGTAATATGTATTGAAGCAAGTAGGAGAAATTATGATTAGCATCCAAGGCTTTAAATTCAGTTTCAAATTTTGTTTCACGCATTTTGCAAATGAAGCTACACCTCATCAATTGGTCGTTAGTGAAGTTAGACATTAGACTATGGCATGAGTTTTTGTTTGTTGTTCATATTCATGTTCACCAGATGATTGTGCTCTGTAGTGTTCATATAAGAGCTGAAACCATTAAAAAGAATCTTATTTTGTGGGCATTAGAGATCTGGGATGCACTTCGAGCTGCTGCAGAAGCTGATTTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGATCATTGTACAAAGTGCTGATTTAACCATTTGTTATGATGAAAGAGGTATTTATAATCAACCCCACTACTTTTATTAATCCAAAAAGCACCCCACCACTCTTTAGAATATCTTCACTCTACCTTGCATACTTCATTCTTGGATCTAGGATCTAATGCTTGGTTTCTGTGGCATTGGGAAAATTGTAATATTGTTAATATCTTATTCTGATTGGGAAACGTGAAATATTACTATAATTTATTTATTCAGTTAGAATGAAAGTCATGAATATAGATAAGATAAGATATAAGATAGTTCCATTGTCCAAGGAAAAACGAAGTTGTGAGTATTGAGTGTGGCATTAGATGGTTCGATCCAACACTCTTTTTGCATATATTATCAATTGTGATTTAAATTTCCTAATGTTTTTTTTTTTTTTTTTTATCCTTTCTCACAAATCAATTGCAGGTGCGAAATACGAATTGCCTAAGTATGTTTTGAGCGAGCCAACAAACTTGGTTTGAAGTAAAATATGAGAGAGATGAGGAAGAGGCTGTGTATCTTTTGTGTTGGAAATTGATTGTAAATCATGTATATTACAATATTACTTCCTTTTCTAATGTTTCTTTTCAGTCTGTACTTTGAAAGATTTCCCATATTGATCAATTGGGGACTTGCGCTAACTTGCTGTAAGTTCGTTTTGATCCAATGAAAGGAATGAAATGTCTATTTGGAGTTGTCTCGGTCTTGTCCCATTGAGTTACAGATATTTATTATATCGTAAACATTTAATTCCTACACATATTTGCAATTTGGTTAAACCTAAAGAGAGTTCATC

mRNA sequence

ACCAGAGGGACTCAAAGCTTCGGCTTTTGACTTTTTGGACTCTCAGCGAACCTTCTTCCCTCTGTTCACTTTTTCCTTCCAAATCTGCCTTTCCTCTTCCTTCTCTTCTCACCCCTTTTCTTCTTTTTCTCTCCAAATTTTGTACTCTTTAATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGTCTGTGAAAAAAATCCGGAAGCCTAAACCTTGGAAGAATCCCCAGCCAATAACAAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGAGATCTGGGATGCACTTCGAGCTGCTGCAGAAGCTGATTTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGATCATTGTACAAAGTGCTGATTTAACCATTTGTTATGATGAAAGAGGTGCGAAATACGAATTGCCTAAGTATGTTTTGAGCGAGCCAACAAACTTGGTTTGAAGTAAAATATGAGAGAGATGAGGAAGAGGCTGTGTATCTTTTGTGTTGGAAATTGATTGTAAATCATGTATATTACAATATTACTTCCTTTTCTAATGTTTCTTTTCAGTCTGTACTTTGAAAGATTTCCCATATTGATCAATTGGGGACTTGCGCTAACTTGCTGTAAGTTCGTTTTGATCCAATGAAAGGAATGAAATGTCTATTTGGAGTTGTCTCGGTCTTGTCCCATTGAGTTACAGATATTTATTATATCGTAAACATTTAATTCCTACACATATTTGCAATTTGGTTAAACCTAAAGAGAGTTCATC

Coding sequence (CDS)

ATGGGTTGTGCCGGATCGTCGCAGGCCAAAGGCGACGGGTCTGTGAAAAAAATCCGGAAGCCTAAACCTTGGAAGAATCCCCAGCCAATAACAAAGACAGATCTTGTGCGGATGCGTGATGAATTTTGGGATACTGCACCTCATTATGGTGGCAGAAAAGAGATCTGGGATGCACTTCGAGCTGCTGCAGAAGCTGATTTGACGCTAGCACAAGCAATTGTGGATAGTGCAGGGATCATTGTACAAAGTGCTGATTTAACCATTTGTTATGATGAAAGAGGTGCGAAATACGAATTGCCTAAGTATGTTTTGAGCGAGCCAACAAACTTGGTTTGA

Protein sequence

MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALRAAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV*

Homology

[Close]

BLAST of CSPI04G22780 vs. ExPASy Swiss-Prot
Match: Q4V8W7 (Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-23
Identity = 59/115 (51.30%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 2   GCAGSSQAKGDGSVKKIRKPKP-WKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 61
           G    +Q K  G  + ++K KP WK+  P+T+  L   RDEFWDTAP + GRKEIWDAL+
Sbjct: 14  GRGSRTQRKRGGRNEPLKKDKPKWKSDYPMTEGQLRSKRDEFWDTAPAFEGRKEIWDALK 73

Query: 62  AAAEA----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAA A    D  LAQAIVD A I +    LT CYDE G +Y+LP Y L+ P NL+
Sbjct: 74  AAAVALECSDHELAQAIVDGANITLPHGSLTECYDELGNRYQLPVYCLAPPVNLI 128

[Close]

BLAST of CSPI04G22780 vs. ExPASy Swiss-Prot
Match: Q6GL38 (Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.6e-23
Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 0


Query: 4   AGSSQAKGDGSVKKIRKPKP-WKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALRAA 63
           A   Q K  G  + ++K +P WK+  P+T   L   RDEFWDTAP + GRKEIWDAL+AA
Sbjct: 19  ASGQQRKRAGRNEPLKKERPRWKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAA 78

Query: 64  AEA----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           A A    D  LAQAIVD A I +    LT CYDE G +Y+LP Y L+ P NL+
Sbjct: 79  AFAVEANDHELAQAIVDGASITLPHGSLTECYDELGTRYQLPVYCLAPPVNLI 131

[Close]

BLAST of CSPI04G22780 vs. ExPASy Swiss-Prot
Match: Q6DG43 (Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-23
Identity = 58/111 (52.25%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 5   GSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALRAAAE 64
           G+  A G     K  KPK WK+  P+T   L   RDEFWDTAP + GRKEIWDAL+AAA+
Sbjct: 21  GTGVALGRNQPLKREKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAQ 80

Query: 65  A----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           A    D  LAQAI+D A I +    LT CYDE G +Y+LP Y LS P N++
Sbjct: 81  AFESNDHELAQAIIDGASITLPHGALTECYDELGNRYQLPVYCLSPPVNMI 130

[Close]

BLAST of CSPI04G22780 vs. ExPASy Swiss-Prot
Match: Q5EAE3 (Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-22
Identity = 57/111 (51.35%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 5   GSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALRAAAE 64
           G+  A G     K  KPK WK+  P+T   L   RDEFWDTAP + GRKEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 65  A----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           A    D  LAQAI+D A I +    LT CYDE G +Y+LP Y L+ P N++
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

[Close]

BLAST of CSPI04G22780 vs. ExPASy Swiss-Prot
Match: Q8WUN7 (Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2)

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-22
Identity = 57/111 (51.35%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 5   GSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALRAAAE 64
           G+  A G     K  KPK WK+  P+T   L   RDEFWDTAP + GRKEIWDAL+AAA 
Sbjct: 21  GTGVALGRNQPLKKEKPK-WKSDYPMTDGQLRSKRDEFWDTAPAFEGRKEIWDALKAAAH 80

Query: 65  A----DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           A    D  LAQAI+D A I +    LT CYDE G +Y+LP Y L+ P N++
Sbjct: 81  AFESNDHELAQAIIDGANITLPHGALTECYDELGNRYQLPVYCLAPPINMI 130

[Close]

BLAST of CSPI04G22780 vs. ExPASy TrEMBL
Match: A0A0A0KZH7 (UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G626080 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 3.9e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 111

[Close]

BLAST of CSPI04G22780 vs. ExPASy TrEMBL
Match: A0A1S3CJZ5 (ubiquitin domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC103501821 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.1e-57
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CSPI04G22780 vs. ExPASy TrEMBL
Match: A0A5N6RSN1 (UBD domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019544 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.2e-54
Identity = 103/111 (92.79%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDG+VKKIRKPKPWK+PQPITKT L+++RDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGTVKKIRKPKPWKHPQPITKTHLMQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CSPI04G22780 vs. ExPASy TrEMBL
Match: A0A6J1CTM1 (ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC111014152 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.8e-54
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKT+LV+MRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CSPI04G22780 vs. ExPASy TrEMBL
Match: A0A6J1IYX4 (ubiquitin domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111480432 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.6e-53
Identity = 103/111 (92.79%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKTDL RMRDEFWDTAPHYGG KEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTDLARMRDEFWDTAPHYGGTKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGA+YELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGARYELPKYVLSEPTNLI 111

[Close]

BLAST of CSPI04G22780 vs. NCBI nr
Match: XP_004146021.1 (ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN55055.1 hypothetical protein Csa_012079 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 8.0e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 111

[Close]

BLAST of CSPI04G22780 vs. NCBI nr
Match: XP_008463752.1 (PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 229.9 bits (585), Expect = 1.0e-56
Identity = 110/111 (99.10%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CSPI04G22780 vs. NCBI nr
Match: XP_038898666.1 (ubiquitin domain-containing protein 1-like [Benincasa hispida])

HSP 1 Score: 222.2 bits (565), Expect = 2.2e-54
Identity = 105/111 (94.59%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKG+G VKKIRKPKPWK+PQPI+KTDLVRMRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGNGPVKKIRKPKPWKHPQPISKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CSPI04G22780 vs. NCBI nr
Match: KAE8124679.1 (hypothetical protein FH972_019544 [Carpinus fangiana])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 103/111 (92.79%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDG+VKKIRKPKPWK+PQPITKT L+++RDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGTVKKIRKPKPWKHPQPITKTHLMQLRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CSPI04G22780 vs. NCBI nr
Match: XP_022144511.1 (ubiquitin domain-containing protein 1-like [Momordica charantia])

HSP 1 Score: 219.5 bits (558), Expect = 1.4e-53
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGSSQAKGDG VKKIRKPK WK+PQPITKT+LV+MRDEFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSSQAKGDGPVKKIRKPKAWKHPQPITKTELVQMRDEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAEADLTLAQAIVDSAG+IVQSADLTICYDERGAKYELPKYVLSEPTNL+
Sbjct: 61  AAAEADLTLAQAIVDSAGVIVQSADLTICYDERGAKYELPKYVLSEPTNLI 111

[Close]

BLAST of CSPI04G22780 vs. TAIR 10
Match: AT1G53400.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 203.4 bits (516), Expect = 9.8e-53
Identity = 92/110 (83.64%), Postives = 106/110 (96.36%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGCAGS+Q++ DGSVKKIRKPKPWK+ QPITK +L+++R+EFWDTAPHYGGRKEIWDALR
Sbjct: 1   MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFWDTAPHYGGRKEIWDALR 60

Query: 61  AAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNL 111
           AAAEAD++LAQAIVDSAG+IVQ+ DLT+CYDERGAKYELPKYVLSEPTNL
Sbjct: 61  AAAEADISLAQAIVDSAGVIVQNTDLTVCYDERGAKYELPKYVLSEPTNL 110

[Close]

BLAST of CSPI04G22780 vs. TAIR 10
Match: AT5G45740.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-44
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSV--KKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDA 60
           MGC GSSQA+ +G    KKI KPKPW + +PIT+  L  MR+EFWDT+PHYGG++EIW+A
Sbjct: 1   MGCIGSSQARNEGGAKRKKIMKPKPWAHTEPITRAQLTNMREEFWDTSPHYGGQREIWEA 60

Query: 61  LRAAAEADLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           LRAAAEADL LAQ IVDSAG+IVQ+ DLT+C+DERGA+YELP+YVLSEPTNL+
Sbjct: 61  LRAAAEADLKLAQTIVDSAGVIVQNRDLTLCWDERGARYELPRYVLSEPTNLI 113

[Close]

BLAST of CSPI04G22780 vs. TAIR 10
Match: AT1G16960.1 (Ubiquitin domain-containing protein )

HSP 1 Score: 165.6 bits (418), Expect = 2.3e-41
Identity = 76/112 (67.86%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MGCAGSSQAKGDGSVKKIRKPKPWKNPQPITKTDLVRMRDEFWDTAPHYGGRKEIWDALR 60
           MGC+ SS+   +G  +KIR+PK WK+PQPI++ +L +MR+EFWDTAPHYGG+KEIWDALR
Sbjct: 1   MGCS-SSRTIAEGKKEKIRRPKTWKHPQPISRDELTQMREEFWDTAPHYGGKKEIWDALR 60

Query: 61  AAAEA-DLTLAQAIVDSAGIIVQSADLTICYDERGAKYELPKYVLSEPTNLV 112
           AAAE  DL+LAQ I++SAG+IVQ+ DLTICYDE+G+KYELPKYVL +P+NL+
Sbjct: 61  AAAEEDDLSLAQTILESAGVIVQNTDLTICYDEKGSKYELPKYVLRDPSNLI 111

The following BLAST results are available for this feature:

BLAST of CSPI04G22780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4V8W7	2.1e-23	51.30	Ubiquitin domain-containing protein 1 OS=Danio rerio OX=7955 GN=ubtd1 PE=2 SV=1	[more]
Q6GL38	4.6e-23	51.33	Ubiquitin domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=ubtd1 PE=...	[more]
Q6DG43	6.0e-23	52.25	Ubiquitin domain-containing protein 2 OS=Danio rerio OX=7955 GN=ubtd2 PE=2 SV=1	[more]
Q5EAE3	3.0e-22	51.35	Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1	[more]
Q8WUN7	3.0e-22	51.35	Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2	[more]

BLAST of CSPI04G22780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZH7	3.9e-57	100.00	UBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G626080 PE=4 SV...	[more]
A0A1S3CJZ5	5.1e-57	99.10	ubiquitin domain-containing protein 1-like OS=Cucumis melo OX=3656 GN=LOC1035018...	[more]
A0A5N6RSN1	5.2e-54	92.79	UBD domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_019544 PE=...	[more]
A0A6J1CTM1	6.8e-54	93.69	ubiquitin domain-containing protein 1-like OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1IYX4	2.6e-53	92.79	ubiquitin domain-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CSPI04G22780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146021.1	8.0e-57	100.00	ubiquitin domain-containing protein 1 [Cucumis sativus] >KGN55055.1 hypothetical...	[more]
XP_008463752.1	1.0e-56	99.10	PREDICTED: ubiquitin domain-containing protein 1-like [Cucumis melo]	[more]
XP_038898666.1	2.2e-54	94.59	ubiquitin domain-containing protein 1-like [Benincasa hispida]	[more]
KAE8124679.1	1.1e-53	92.79	hypothetical protein FH972_019544 [Carpinus fangiana]	[more]
XP_022144511.1	1.4e-53	93.69	ubiquitin domain-containing protein 1-like [Momordica charantia]	[more]

BLAST of CSPI04G22780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53400.1	9.8e-53	83.64	Ubiquitin domain-containing protein	[more]
AT5G45740.1	1.7e-44	70.80	Ubiquitin domain-containing protein	[more]
AT1G16960.1	2.3e-41	67.86	Ubiquitin domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032752	DC-UbP/UBTD2, N-terminal domain	PFAM	PF16455	UBD	coord: 24..81 e-value: 8.0E-21 score: 74.1
IPR038169	DC-UbP/UBTD2, N-terminal domain superfamily	GENE3D	1.20.225.20		coord: 22..74 e-value: 1.1E-16 score: 62.8
None	No IPR available	PANTHER	PTHR13609:SF25	BINDING PROTEIN, PUTATIVE-RELATED	coord: 24..80
IPR039869	Ubiquitin domain-containing protein 1/2	PANTHER	PTHR13609	UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED	coord: 24..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G22780.1	CSPI04G22780.1	mRNA
CSPI04G22780.2	CSPI04G22780.2	mRNA