CSPI04G22580 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G22580
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr4: 20842632 .. 20843301 (+)
RNA-Seq Expression	CSPI04G22580
Synteny	CSPI04G22580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAAACGGAGAGAGTTAATAGGTGTTTGGAGCCGTACCGAAGATGTTTCTGTAATGAACCCAGAAAAACTGATGGGCATCCCATGGGCAGAACTATGGTATAACACCAATTTCCATGCTTCCACAAGGACAACACCCTACCAAATGGTTTATGGTAGACCACCACCTCCGCTTTTTTCCTTTGGGGATAGAAAGACATTGAATAATAGTGCAGAGCAGCTCCTCCAAGAGAGGGACTTGATCATTAATGCTTTAAAAGAAAACTTAGTGATTGCCCAAAATAGAATGAAGAAACAGGCAAACTTGCACAGGAGGAAATTAAATTTCCAGGTGGGTGATGAAGTTTTTTTAAAATTAAGACCATATCGTCAGCGCTCTTTGGCTAGGAAGCATTGCGAGAAGTAGCTCCGAAGTTCTATGGCCCTTATAAAGTCGTGGAAAAGATTGGTGAAGTGGCATACCGGTTGAAATTACCACCAGAGGCGAATATACACAATGTTTTTCATGTTTCACAGCTGAAGCTTAAATCGAGACAAACACAGACAGTTCAACACATTGCACCTTCCCTCACAGAAGAGTTTGAGCTCCAAGTCTGTCCGGAAGGGGTTTTGGTAGTGAGATGGAATAGTGACCTGGGAGCAAACGAGTGACTGCTGCAGTGGAAGGG

mRNA sequence

ATGGGCAAACGGAGAGAGTTAATAGGTGTTTGGAGCCGTACCGAAGATGTTTCTGTAATGAACCCAGAAAAACTGATGGGCATCCCATGGGCAGAACTATGGTATAACACCAATTTCCATGCTTCCACAAGGACAACACCCTACCAAATGGTTTATGGTAGACCACCACCTCCGCTTTTTTCCTTTGGGGATAGAAAGACATTGAATAATAGTGCAGAGCAGCTCCTCCAAGAGAGGGACTTGATCATTAATGCTTTAAAAGAAAACTTAGTGATTGCCCAAAATAGAATGAAGAAACAGGCAAACTTGCACAGGAGGAAATTAAATTTCCAGGAAGCATTGCGAGAAGTAGCTCCGAAGTTCTATGGCCCTTATAAAGTCGTGGAAAAGATTGGTGAAGTGGCATACCGGTTGAAATTACCACCAGAGGCGAATATACACAATGTTTTTCATGTTTCACAGCTGAAGCTTAAATCGAGACAAACACAGACAGTTCAACACATTGCACCTTCCCTCACAGAAGAGTTTGAGCTCCAAGTCTGTCCGGAAGGGGTTTTGGTAGTGAGATGGAATAGTGACCTGGGAGCAAACGAGTGACTGCTGCAGTGGAAGGG

Coding sequence (CDS)

ATGGGCAAACGGAGAGAGTTAATAGGTGTTTGGAGCCGTACCGAAGATGTTTCTGTAATGAACCCAGAAAAACTGATGGGCATCCCATGGGCAGAACTATGGTATAACACCAATTTCCATGCTTCCACAAGGACAACACCCTACCAAATGGTTTATGGTAGACCACCACCTCCGCTTTTTTCCTTTGGGGATAGAAAGACATTGAATAATAGTGCAGAGCAGCTCCTCCAAGAGAGGGACTTGATCATTAATGCTTTAAAAGAAAACTTAGTGATTGCCCAAAATAGAATGAAGAAACAGGCAAACTTGCACAGGAGGAAATTAAATTTCCAGGAAGCATTGCGAGAAGTAGCTCCGAAGTTCTATGGCCCTTATAAAGTCGTGGAAAAGATTGGTGAAGTGGCATACCGGTTGAAATTACCACCAGAGGCGAATATACACAATGTTTTTCATGTTTCACAGCTGAAGCTTAAATCGAGACAAACACAGACAGTTCAACACATTGCACCTTCCCTCACAGAAGAGTTTGAGCTCCAAGTCTGTCCGGAAGGGGTTTTGGTAGTGAGATGGAATAGTGACCTGGGAGCAAACGAGTGA

Protein sequence

MGKRRELIGVWSRTEDVSVMNPEKLMGIPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENLVIAQNRMKKQANLHRRKLNFQEALREVAPKFYGPYKVVEKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVVRWNSDLGANE*

Homology

[Close]

BLAST of CSPI04G22580 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 35   YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENL 94
            YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L
Sbjct: 1118 YNNAIHSATQMTPFEIVHRYSPALSPLELPSFSD-KTDENS-----QETIQVFQTVKEHL 1177

Query: 95   VIAQNRMKKQANL----------------HRRKLNFQEALREVAPKFYGPYKVVEKIGEV 154
                 +MKK  ++                 R K  F     ++AP F GP+ V++K G  
Sbjct: 1178 NTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPN 1237

Query: 155  AYRLKLPPEAN--IHNVFHVSQLK 157
             Y L LP        + FHVS L+
Sbjct: 1238 NYELDLPDSIKHMFSSTFHVSHLE 1255

[Close]

BLAST of CSPI04G22580 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 35   YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENL 94
            YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L
Sbjct: 1118 YNNAIHSATQMTPFEIVHRYSPALSPLELPSFSD-KTDENS-----QETIQVFQTVKEHL 1177

Query: 95   VIAQNRMKKQANL----------------HRRKLNFQEALREVAPKFYGPYKVVEKIGEV 154
                 +MKK  ++                 R K  F     ++AP F GP+ V++K G  
Sbjct: 1178 NTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPN 1237

Query: 155  AYRLKLPPEAN--IHNVFHVSQLK 157
             Y L LP        + FHVS L+
Sbjct: 1238 NYELDLPDSIKHMFSSTFHVSHLE 1255

[Close]

BLAST of CSPI04G22580 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 35   YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENL 94
            YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L
Sbjct: 1118 YNNAIHSATQMTPFEIVHRYSPALSPLELPSFSD-KTDENS-----QETIQVFQTVKEHL 1177

Query: 95   VIAQNRMKKQANL----------------HRRKLNFQEALREVAPKFYGPYKVVEKIGEV 154
                 +MKK  ++                 R K  F     ++AP F GP+ V++K G  
Sbjct: 1178 NTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPN 1237

Query: 155  AYRLKLPPEAN--IHNVFHVSQLK 157
             Y L LP        + FHVS L+
Sbjct: 1238 NYELDLPDSIKHMFSSTFHVSHLE 1255

[Close]

BLAST of CSPI04G22580 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 35   YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENL 94
            YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L
Sbjct: 1118 YNNAIHSATQMTPFEIVHRYSPALSPLELPSFSD-KTDENS-----QETIQVFQTVKEHL 1177

Query: 95   VIAQNRMKKQANL----------------HRRKLNFQEALREVAPKFYGPYKVVEKIGEV 154
                 +MKK  ++                 R K  F     ++AP F GP+ V++K G  
Sbjct: 1178 NTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPN 1237

Query: 155  AYRLKLPPEAN--IHNVFHVSQLK 157
             Y L LP        + FHVS L+
Sbjct: 1238 NYELDLPDSIKHMFSSTFHVSHLE 1255

[Close]

BLAST of CSPI04G22580 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-05
Identity = 44/144 (30.56%), Postives = 64/144 (44.44%), Query Frame = 0


Query: 35   YNTNFHASTRTTPYQMVY----GRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALKENL 94
            YN   H++T+ TP+++V+       P  L SF D KT  NS     QE   +   +KE+L
Sbjct: 1118 YNNAIHSATQMTPFEIVHRYSPALSPLELPSFSD-KTDENS-----QETIQVFQTVKEHL 1177

Query: 95   VIAQNRMKKQANL----------------HRRKLNFQEALREVAPKFYGPYKVVEKIGEV 154
                 +MKK  ++                 R K  F     ++AP F GP+ V++K G  
Sbjct: 1178 NTNNIKMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPN 1237

Query: 155  AYRLKLPPEAN--IHNVFHVSQLK 157
             Y L LP        + FHVS L+
Sbjct: 1238 NYELDLPDSIKHMFSSTFHVSHLE 1255

[Close]

BLAST of CSPI04G22580 vs. ExPASy TrEMBL
Match: A0A5D3DUN8 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001330 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.6e-64
Identity = 124/190 (65.26%), Postives = 149/190 (78.42%), Query Frame = 0


Query: 28  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
           IPWAELWYNT FHAS +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 45  IPWAELWYNTTFHASAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 104

Query: 88  ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
           ENL++AQNRMKKQA+LHRR+L F                   ++   ++APKFYGPY++V
Sbjct: 105 ENLMMAQNRMKKQADLHRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYRIV 164

Query: 148 EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
           E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +
Sbjct: 165 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHQVQHMPPALTEEFELQVEPEAVLGI 224

[Close]

BLAST of CSPI04G22580 vs. ExPASy TrEMBL
Match: A0A5A7VHA7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold25G001140 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 3.4e-64
Identity = 123/190 (64.74%), Postives = 149/190 (78.42%), Query Frame = 0


Query: 28   IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
            IPWAELWYNT FHAS +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 1138 IPWAELWYNTTFHASAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 1197

Query: 88   ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
            ENL++AQNRMKKQA+LHR++L F                   ++   ++APKFYGPY++V
Sbjct: 1198 ENLMMAQNRMKKQADLHRKELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYRIV 1257

Query: 148  EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
            E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +
Sbjct: 1258 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHQVQHVPPALTEEFELQVEPEAVLGI 1317

[Close]

BLAST of CSPI04G22580 vs. ExPASy TrEMBL
Match: A0A5D3BFZ9 (Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold401G00130 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 7.6e-64
Identity = 123/190 (64.74%), Postives = 148/190 (77.89%), Query Frame = 0


Query: 28  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
           IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 461 IPWAELWYNTTFHALAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 520

Query: 88  ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
           ENL++AQNRMKKQA+LHRR+L F                   ++   ++APKFYGPY++V
Sbjct: 521 ENLMMAQNRMKKQADLHRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYRIV 580

Query: 148 EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
           E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +
Sbjct: 581 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHQVQHVPPALTEEFELQVEPEAVLGI 640

[Close]

BLAST of CSPI04G22580 vs. ExPASy TrEMBL
Match: A0A5A7TH70 (DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G001860 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.6e-61
Identity = 120/190 (63.16%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 28   IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
            IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 1100 IPWAELWYNTTFHALAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 1159

Query: 88   ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
            ENL++ QNRMKKQA+LHRR+L F                   ++    +APKFYG Y++V
Sbjct: 1160 ENLIMTQNRMKKQADLHRRELKFKVGDEVYLKLRPYRQRSLARKRCENLAPKFYGAYRIV 1219

Query: 148  EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
            E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV  E VL +
Sbjct: 1220 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHLVQHVPPALTEEFELQVEHEAVLGI 1279

[Close]

BLAST of CSPI04G22580 vs. ExPASy TrEMBL
Match: A0A5D3C142 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001130 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.6e-61
Identity = 120/190 (63.16%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 28   IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
            IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 1100 IPWAELWYNTTFHALAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 1159

Query: 88   ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
            ENL++ QNRMKKQA+LHRR+L F                   ++    +APKFYG Y++V
Sbjct: 1160 ENLIMTQNRMKKQADLHRRELKFKVGDEVYLKLRPYRQRSLARKRCENLAPKFYGAYRIV 1219

Query: 148  EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
            E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV  E VL +
Sbjct: 1220 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHLVQHVPPALTEEFELQVEHEAVLGI 1279

[Close]

BLAST of CSPI04G22580 vs. NCBI nr
Match: KAA0062449.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK27436.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 255.0 bits (650), Expect = 5.4e-64
Identity = 124/190 (65.26%), Postives = 149/190 (78.42%), Query Frame = 0


Query: 28  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
           IPWAELWYNT FHAS +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 45  IPWAELWYNTTFHASAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 104

Query: 88  ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
           ENL++AQNRMKKQA+LHRR+L F                   ++   ++APKFYGPY++V
Sbjct: 105 ENLMMAQNRMKKQADLHRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYRIV 164

Query: 148 EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
           E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +
Sbjct: 165 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHQVQHMPPALTEEFELQVEPEAVLGI 224

[Close]

BLAST of CSPI04G22580 vs. NCBI nr
Match: KAA0066550.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 254.6 bits (649), Expect = 7.0e-64
Identity = 123/190 (64.74%), Postives = 149/190 (78.42%), Query Frame = 0


Query: 28   IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
            IPWAELWYNT FHAS +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 1138 IPWAELWYNTTFHASAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 1197

Query: 88   ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
            ENL++AQNRMKKQA+LHR++L F                   ++   ++APKFYGPY++V
Sbjct: 1198 ENLMMAQNRMKKQADLHRKELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYRIV 1257

Query: 148  EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
            E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +
Sbjct: 1258 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHQVQHVPPALTEEFELQVEPEAVLGI 1317

[Close]

BLAST of CSPI04G22580 vs. NCBI nr
Match: TYJ98047.1 (Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.6e-63
Identity = 123/190 (64.74%), Postives = 148/190 (77.89%), Query Frame = 0


Query: 28  IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
           IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 461 IPWAELWYNTTFHALAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 520

Query: 88  ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
           ENL++AQNRMKKQA+LHRR+L F                   ++   ++APKFYGPY++V
Sbjct: 521 ENLMMAQNRMKKQADLHRRELKFKVGDEVYLKLRPYRQRSLARKRCEKLAPKFYGPYRIV 580

Query: 148 EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
           E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV PE VL +
Sbjct: 581 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHQVQHVPPALTEEFELQVEPEAVLGI 640

[Close]

BLAST of CSPI04G22580 vs. NCBI nr
Match: KAA0040609.1 (DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-61
Identity = 120/190 (63.16%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 28   IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
            IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 1100 IPWAELWYNTTFHALAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 1159

Query: 88   ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
            ENL++ QNRMKKQA+LHRR+L F                   ++    +APKFYG Y++V
Sbjct: 1160 ENLIMTQNRMKKQADLHRRELKFKVGDEVYLKLRPYRQRSLARKRCENLAPKFYGAYRIV 1219

Query: 148  EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
            E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV  E VL +
Sbjct: 1220 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHLVQHVPPALTEEFELQVEHEAVLGI 1279

[Close]

BLAST of CSPI04G22580 vs. NCBI nr
Match: TYK05651.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 3.3e-61
Identity = 120/190 (63.16%), Postives = 144/190 (75.79%), Query Frame = 0


Query: 28   IPWAELWYNTNFHASTRTTPYQMVYGRPPPPLFSFGDRKTLNNSAEQLLQERDLIINALK 87
            IPWAELWYNT FHA  +TTP+Q+VYGRPPPPL  +GD K+ NNS EQLL+ERDL+I+ALK
Sbjct: 1100 IPWAELWYNTTFHALAKTTPFQVVYGRPPPPLVRYGDIKSNNNSVEQLLKERDLVISALK 1159

Query: 88   ENLVIAQNRMKKQANLHRRKLNF-------------------QEALREVAPKFYGPYKVV 147
            ENL++ QNRMKKQA+LHRR+L F                   ++    +APKFYG Y++V
Sbjct: 1160 ENLIMTQNRMKKQADLHRRELKFKVGDEVYLKLRPYRQRSLARKRCENLAPKFYGAYRIV 1219

Query: 148  EKIGEVAYRLKLPPEANIHNVFHVSQLKLKSRQTQTVQHIAPSLTEEFELQVCPEGVLVV 199
            E+IGEVAYRL LPPEA IHNVFHVSQLKLK   +  VQH+ P+LTEEFELQV  E VL +
Sbjct: 1220 EEIGEVAYRLNLPPEAIIHNVFHVSQLKLKLGNSHLVQHVPPALTEEFELQVEHEAVLGI 1279

The following BLAST results are available for this feature:

BLAST of CSPI04G22580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.5e-05	30.56	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.5e-05	30.56	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.5e-05	30.56	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.5e-05	30.56	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.5e-05	30.56	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI04G22580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DUN8	2.6e-64	65.26	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7VHA7	3.4e-64	64.74	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BFZ9	7.6e-64	64.74	Transposon Tf2-6 polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7TH70	1.6e-61	63.16	DNA polymerase epsilon catalytic subunit OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C142	1.6e-61	63.16	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of CSPI04G22580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062449.1	5.4e-64	65.26	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK27436.1 Tran...	[more]
KAA0066550.1	7.0e-64	64.74	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ98047.1	1.6e-63	64.74	Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]	[more]
KAA0040609.1	3.3e-61	63.16	DNA polymerase epsilon catalytic subunit A-like [Cucumis melo var. makuwa]	[more]
TYK05651.1	3.3e-61	63.16	Retrotransposable element Tf2 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G22580 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 83..103
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 28..166
None	No IPR available	PANTHER	PTHR46148:SF38	PROTEIN NYNRIN-LIKE	coord: 28..166
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 20..99 e-value: 2.1E-6 score: 29.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G22580.1	CSPI04G22580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity