CSPI04G22520 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G22520
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L13
Location	Chr4: 20796224 .. 20799576 (+)
RNA-Seq Expression	CSPI04G22520
Synteny	CSPI04G22520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGAAGAGAAGTTGTGTTTGGCAAATTTATCCATTCCCACCGTTTTCCCTTTTCTCATCTCCGAATTCACAAAGGGGCAAGAAGGAGTCTTATCCACATTCCATAGCAGCAATTCACCAACTGAAAGAGCCACTGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTCACCAATGGAACCACGAGTAACAAAAGCTTTCCCAGAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCTCCATTTCTCTAACCTCCAATTCCAAGAGGTCGGCCCTTCAAGTGCGAGCCCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGTACGTCTGTAGATCATACAATATGTTTATTTGTTTGCGCTAAATTTGGTATCGTGAGTTTGAGCGTAATTGAACTCGTTTTTTGCATAAGACGTTAATGGGTTCCTATTAAGCCTAAAACGCTAATGGGTTGTTGTTTGTTGTTTCTTTTGGGGCTGTTACATCGAACATTTGGCTTCTCCGTATTGCAATGTCTCTTTCCGTTGATCTATTGAAGTTATTTTCACAGAAACTATCAACAAAAAAACTGGATACAAGTGTAATTGTTCTTATGACTGAACATACAAACCTCTCTTTGCTTGTTAGGCCAATTTGATATGCCCATTCTCCGAAACTTGAAGAATTGTTTCCTGTTTTAGCTAGCTGTTTGTTTGTTTTCAATTTTCAGATTTGGATGCTTAGCAGTGATTGTTCTTTTCCATTCAGGATATATGGAATAAAACGTGGTACCCGAAGGCGGCAGATCATGTGAACACAGAAAAACCTTGGTACGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCAACTATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGTGCTTTTGTGATTGTGGTATGTGGCTGTACTTGTACATAATGTTTTAGCTGCAATCACTACAGCATTGATTGCGCTTTTATCTACTCAACTTGAACTTTCTTGCTATTTGTTTTCATTTAGTTGCTTATTCATTATAACCCCTGAATTATACTAATGCTCTTGATCCTACTTAGGTAAATGCAGAAAAAATTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACTGTAGAAACTTTTGATCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGGTAAGTGGTTCCTTCCTTCTACTCAAGTGCCATATTGATATGCACGCAGACTATTCTGCAAACTGAATATTTGTGGGTGATAAGCGTGATTGTTTAAGTTTAGAGTGACGCTCCATTTAGGAAAATTGTGTCAAAAGATTATGCGGAAAGTATATTTTCTGCTCTATTCGGTTGATCAGTTTTCTTAGAAGATTTAGTTAGTCGTTTAAGATAGCTTTTGGTATTTTGGTTGCGGTAGTGTAGACTATTGGTTAGCTATATTCCATCTTACAGTAGAGTTCCTCAAACTTATCACCAATGGAGTGTTAGAGCTTCAGATTCAAATTTAAGTTTTTCCAATGATTCTCACACTCTACAACGTAGGATTCTTGACGCAATGAGTTGATGTATGGCAAATAATCGTGTCTTTCAGTTCATTAGAAGAATCTCCAATTATAAGAAAATAAGATTTCTGCTGGCCTTTTAAAATCTCTTCAAGAGGATTTCACTACTTGGATTGTAATTTGTTAGGTTAACCATGTGGAGGATGTGACAAGACCGAGTTGCTTGGAAAAGTTTGAAGTGTTTGAGAAACAAACATATGGTCTTTTGCTTTATTCTTTGGCTACTCTACTGGCAATCTGTTGGTTACATTTAATAGTAAAAATCTTTTTCCCTTTAAGTCATACTGGCACTACCAGAGTCGAAGACCTATATGGTTGATTGAGTCTGACAACTGTCTTGGATGATTTTTTGGCAATTCGGGACCAGGATAGCTAAAGTAGTTGCTTTAGTGGATTTTTAATTTTTTTGGGTATCGTTTGAACCACAACCATTGACTTGTAAATTTCATGCTTTCTGAATACCTAGCATATGTGTTACGAAATCAACAATTAACAATACAAAAAACATATAGAGATTGACACAGAGATATACGTGGTTCACTAACGTGGTTCACTAACAGTGTGTTAGCTATGTCCATAGAGCAAAGGAGAACAATTTTATTAGAGAGAATTTTTCAGAATACAATACGACGCCACTAGGTTAGAGAGTATATATTGTACTTCTCTAAACCCTAGGGTCAGTGAGACCACCGTACTAGGTTTATCTGGGTTTAACTGTATAAGATAGCTTTATCTTAAGTTTCAGCTCTTCGAGAATGATGCAGCAAAATAAAATCTATGTTGTGAAAAAGGAACAACCTCCATAAAAAAAATCAAACAGCCCTGCTTCTGCATCATCCTTTGAACAATTTTTTGTGTTCATGATGCGGTGTATGCTGACACAGGAACTTCTCGTTGTCATTGCTTTGACACATCGTGGATGAAACTGTTCTTTAGATTCTTTTCAAGTAGCTATGAAGTAATTGCCTTGCTTGAAATACTGTTAACCTTCTCAGTTTTTATTTCCTGTAAACTGCTCCATATTGTGTGTATACGATTTCCCTGTCTCCTGCCTTTATTGATGTTCCTGATATTGTATTGGGTGTTTCAAACCATGGCAAAATTTGTGCAGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGACCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTGTATGAACTACTAAGAGCAAACGATGGACGAAGAGACAACGCTCTCTTGTCTGAGGTTTTCAATGTTCATAGAAACGAGTCAGAGTTTCCATGCTTCAACTCAATTTGATATCAGCATTTGATCTGTAATTTAATTCCAAATTCTAGTATCTTGACCCAAAGTTGCGTTTGCAGAGTTATTAAATCAGAAGAGGAAATCCTTAAATCTTGCCCTGTTAAAGGCTGTGATAATGGTACTTTTATTACATTTGTTGATTGATTTCTCTATTTAGAGAGTTCTCTTGGTGTAGAAATGGCCAAAGGTTTCGAACGATAGTGTGCACTTTTGGAGCTCTAAAAGGCATATATTAATATAATAGATACATTATGTGGAGTTGTTA

mRNA sequence

GTAGAAGAGAAGTTGTGTTTGGCAAATTTATCCATTCCCACCGTTTTCCCTTTTCTCATCTCCGAATTCACAAAGGGGCAAGAAGGAGTCTTATCCACATTCCATAGCAGCAATTCACCAACTGAAAGAGCCACTGCCAGAGCTACAATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTCACCAATGGAACCACGAGTAACAAAAGCTTTCCCAGAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCTCCATTTCTCTAACCTCCAATTCCAAGAGGTCGGCCCTTCAAGTGCGAGCCCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGATATATGGAATAAAACGTGGTACCCGAAGGCGGCAGATCATGTGAACACAGAAAAACCTTGGTACGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCAACTATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGTGCTTTTGTGATTGTGGTAAATGCAGAAAAAATTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACTGTAGAAACTTTTGATCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGACCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAGTGTATGAACTACTAAGAGCAAACGATGGACGAAGAGACAACGCTCTCTTGTCTGAGGTTTTCAATGTTCATAGAAACGAGTCAGAGTTTCCATGCTTCAACTCAATTTGATATCAGCATTTGATCTGTAATTTAATTCCAAATTCTAGTATCTTGACCCAAAGTTGCGTTTGCAGAGTTATTAAATCAGAAGAGGAAATCCTTAAATCTTGCCCTGTTAAAGGCTGTGATAATGGTACTTTTATTACATTTGTTGATTGATTTCTCTATTTAGAGAGTTCTCTTGGTGTAGAAATGGCCAAAGGTTTCGAACGATAGTGTGCACTTTTGGAGCTCTAAAAGGCATATATTAATATAATAGATACATTATGTGGAGTTGTTA

Coding sequence (CDS)

ATGGCGATGCTCTGTGCTTCCTCCTCTACACCCACTTTCTCTTTACATTCCACTCTCACCAATGGAACCACGAGTAACAAAAGCTTTCCCAGAAACTCACTCCTTGTTGCCTTTCCACTCCCACATTCAAAATCTTCTTTTCTTCTAACCCAGACCTCCATTTCTCTAACCTCCAATTCCAAGAGGTCGGCCCTTCAAGTGCGAGCCCAAGAGCTGGATCGTGTCCCTTTGGAACAACGGTGGATGTTCGAGGGCGACGAGCTCGACGGCCCTGATATATGGAATAAAACGTGGTACCCGAAGGCGGCAGATCATGTGAACACAGAAAAACCTTGGTACGTGGTTGATGCCACTGATAAGATTTTGGGAAGACTAGCTTCAACTATTGCCAATCATATCCGAGGGAAGGATTTGCCAACCTATACTCCTAGTGTGGATATGGGTGCTTTTGTGATTGTGGTAAATGCAGAAAAAATTGCGGTGTCTGGTAAAAAGAGGACTCAGAAACTATACAGGAGGCATTCAGGGCGACCAGGTGGTATGACTGTAGAAACTTTTGATCAGCTACAGCAGAGAATTCCTGAAAGAATTATCGAGCATGCTGTTCGTGGTATGCTTCCAAAAGGGAGGCTTGGAAGAGCACTCTTTAACCACTTGAAGGTTTACAAAGGACCAGACCATCCACATGAGGCACAAAAGCCAGTTGACCTGCCAATTAGGGACAAAAGGATAAACAAAGAAAGATAG

Protein sequence

MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNSKRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIRDKRINKER*

Homology

[Close]

BLAST of CSPI04G22520 vs. ExPASy Swiss-Prot
Match: Q9SYL9 (50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL13 PE=2 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.6e-90
Identity = 173/253 (68.38%), Postives = 197/253 (77.87%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MA+LC SSST   S  S  ++G+     F          L  S ++       + + +NS
Sbjct: 1   MAVLC-SSSTVILSSSSVKSSGSERKSPF----------LGFSLTAISKPSVRVGIYANS 60

Query: 61  KRSALQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           KR  LQV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KR-GLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEK+AVSGKKR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 DLPIRDKRINKER 249
           DLPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of CSPI04G22520 vs. ExPASy Swiss-Prot
Match: P12629 (50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 PE=1 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.7e-81
Identity = 161/251 (64.14%), Postives = 187/251 (74.50%), Query Frame = 0


Query: 3   MLCASSSTPTFSLHSTLTNGT----TSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTS 62
           M CASS T   +       GT    T   SFPR ++  A  +   KS    T  S   T 
Sbjct: 4   MACASSLTFPSAQTQKSFFGTNVKQTPVLSFPRPTVAAAVAVSARKS----TSASTKCTE 63

Query: 63  NSKRSALQVRAQ-ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDA 122
             ++    V+ +  +  VPL+QRWMF  +E  GPDIWN TWYPK+ADHV T+K WYVVDA
Sbjct: 64  EWRQLKEAVKKEFAIPHVPLDQRWMFTLEEATGPDIWNTTWYPKSADHVPTDKKWYVVDA 123

Query: 123 TDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGR 182
           TD ILGR+ASTIA HIRGK+L +YTPSVDMGAFVIVVNA+K+AVSGKKRTQKLYRRHSGR
Sbjct: 124 TDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGR 183

Query: 183 PGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDL 242
           PGG+  ETFDQLQ+RIPERIIEHAVRGMLPKGRLGR LFNHLKVYKG +HPH+AQ+P+DL
Sbjct: 184 PGGLKEETFDQLQKRIPERIIEHAVRGMLPKGRLGRYLFNHLKVYKGAEHPHQAQQPIDL 243

Query: 243 PIRDKRINKER 249
           P+RDKRI  E+
Sbjct: 244 PLRDKRIRVEK 250

[Close]

BLAST of CSPI04G22520 vs. ExPASy Swiss-Prot
Match: B8HMT1 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=rplM PE=3 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-50
Identity = 98/146 (67.12%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           NKT+ P      + E  WYVVDAT++ LGRLA+ IA  +RGK  P YTPS+D G FVIVV
Sbjct: 2   NKTYLPST---TSLEPKWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVV 61

Query: 155 NAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEK+AV+GKKRTQK+YRRHSGRPGGM  ETF +LQ R+PERIIEHAV+GMLPK  LGR 
Sbjct: 62  NAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRN 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVDLPIR 241
           LF  LKVY GPDHPH+AQKP  L ++
Sbjct: 122 LFTKLKVYAGPDHPHQAQKPEVLTLK 144

[Close]

BLAST of CSPI04G22520 vs. ExPASy Swiss-Prot
Match: Q3MF94 (50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937) OX=240292 GN=rplM PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 5.8e-50
Identity = 98/145 (67.59%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NAEK+AV+GKKRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAEKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVDLPI 240
           LF  LKVY GP HPH+AQKP +L I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of CSPI04G22520 vs. ExPASy Swiss-Prot
Match: Q8YPK6 (50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplM PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.7e-49
Identity = 97/145 (66.90%), Postives = 114/145 (78.62%), Query Frame = 0


Query: 95  NKTWYPKAADHVNTEKPWYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVV 154
           +KT+ P      + E+ WYVVDATDK LGRLAS IA  +RGK+   YTP +D G FVIVV
Sbjct: 2   SKTYLP---PQESLERDWYVVDATDKRLGRLASEIAMILRGKNKAHYTPHLDTGDFVIVV 61

Query: 155 NAEKIAVSGKKRTQKLYRRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRA 214
           NA+K+AV+GKKRTQKLYRRHSGRPGGM  ETF +LQQR+PERI+EHAV+GMLPK  LG+ 
Sbjct: 62  NAKKVAVTGKKRTQKLYRRHSGRPGGMKTETFAKLQQRLPERIVEHAVKGMLPKNSLGKQ 121

Query: 215 LFNHLKVYKGPDHPHEAQKPVDLPI 240
           LF  LKVY GP HPH+AQKP +L I
Sbjct: 122 LFTKLKVYAGPTHPHDAQKPKELNI 143

[Close]

BLAST of CSPI04G22520 vs. ExPASy TrEMBL
Match: A0A0A0KZG1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 9.9e-138
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. ExPASy TrEMBL
Match: A0A1S3CK07 (50S ribosomal protein L13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501842 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 1.5e-133
Identity = 239/248 (96.37%), Postives = 245/248 (98.79%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSSTPTFSLHS+LTNGTTSN+S P NSLLVAFPLPHSKSSFLLTQT+I LTSNS
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KRSAL+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. ExPASy TrEMBL
Match: A0A6J1FT16 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446606 PE=3 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 7.4e-125
Identity = 224/248 (90.32%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSST TFSLHSTL N   SN++ PR SL+  FPLP SKSSFL TQT+I+LTS  
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. ExPASy TrEMBL
Match: A0A6J1IW42 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111480461 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.1e-123
Identity = 221/248 (89.11%), Postives = 229/248 (92.34%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSST TFSLHST  N   SN++ PR SL+  FPLP SKSSFL TQT+I+LTS  
Sbjct: 1   MAMLCASSSTATFSLHSTPNNANASNRAIPRKSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S  QVRAQELDRVPLEQRWMFEGDE+DGPDIWN TWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNNTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. ExPASy TrEMBL
Match: A0A6J1F6Z3 (50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442721 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 220/248 (88.71%), Postives = 230/248 (92.74%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSSTPTF +HSTL NG+ SN+  PR S +  FPLP SKS  L TQT+I+L S S
Sbjct: 1   MAMLCASSSTPTFFVHSTLNNGSKSNRGIPRKSFVDGFPLPQSKSYLLPTQTTITLNSQS 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S +QVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKA DHVNTEKPWYVVDATDK
Sbjct: 61  KSSGVQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAVDHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. NCBI nr
Match: XP_004146016.1 (50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN55030.1 hypothetical protein Csa_012763 [Cucumis sativus])

HSP 1 Score: 499.2 bits (1284), Expect = 2.1e-137
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS
Sbjct: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. NCBI nr
Match: XP_008463780.1 (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 485.3 bits (1248), Expect = 3.1e-133
Identity = 239/248 (96.37%), Postives = 245/248 (98.79%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSSTPTFSLHS+LTNGTTSN+S P NSLLVAFPLPHSKSSFLLTQT+I LTSNS
Sbjct: 1   MAMLCASSSTPTFSLHSSLTNGTTSNRSIPTNSLLVAFPLPHSKSSFLLTQTTIPLTSNS 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           KRSAL+VRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KRSALRVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSGKKRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGKKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV+LPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVELPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. NCBI nr
Match: XP_023524699.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456.8 bits (1174), Expect = 1.2e-124
Identity = 225/248 (90.73%), Postives = 233/248 (93.95%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSST TFSLHSTL NG  SN++ PR SL+  FPL  SKSSFL TQT+I+LTS  
Sbjct: 1   MAMLCASSSTATFSLHSTLNNGNASNRALPRMSLVAGFPLVQSKSSFLQTQTTITLTSKP 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S LQVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVLQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. NCBI nr
Match: XP_022941245.1 (50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 456.4 bits (1173), Expect = 1.5e-124
Identity = 224/248 (90.32%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSST TFSLHSTL N   SN++ PR SL+  FPLP SKSSFL TQT+I+LTS  
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S  QVRAQELDRVPLEQRWMFEGDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFEGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. NCBI nr
Match: KAG6607943.1 (50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 454.9 bits (1169), Expect = 4.4e-124
Identity = 223/248 (89.92%), Postives = 232/248 (93.55%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MAMLCASSST TFSLHSTL N   SN++ PR SL+  FPLP SKSSFL TQT+I+LTS  
Sbjct: 1   MAMLCASSSTATFSLHSTLNNANASNRAIPRMSLVAGFPLPQSKSSFLQTQTTITLTSKP 60

Query: 61  KRSALQVRAQELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120
           K S  QVRAQELDRVPLEQRWMF+GDE+DGPDIWNKTWYPKAADHVNTEKPWYVVDATDK
Sbjct: 61  KSSVFQVRAQELDRVPLEQRWMFKGDEIDGPDIWNKTWYPKAADHVNTEKPWYVVDATDK 120

Query: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGG 180
           ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEK+AVSG+KRTQKLYRRHSGRPGG
Sbjct: 121 ILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKVAVSGRKRTQKLYRRHSGRPGG 180

Query: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240
           MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR
Sbjct: 181 MTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPVDLPIR 240

Query: 241 DKRINKER 249
           DKRINKER
Sbjct: 241 DKRINKER 248

[Close]

BLAST of CSPI04G22520 vs. TAIR 10
Match: AT1G78630.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 333.2 bits (853), Expect = 1.8e-91
Identity = 173/253 (68.38%), Postives = 197/253 (77.87%), Query Frame = 0


Query: 1   MAMLCASSSTPTFSLHSTLTNGTTSNKSFPRNSLLVAFPLPHSKSSFLLTQTSISLTSNS 60
           MA+LC SSST   S  S  ++G+     F          L  S ++       + + +NS
Sbjct: 1   MAVLC-SSSTVILSSSSVKSSGSERKSPF----------LGFSLTAISKPSVRVGIYANS 60

Query: 61  KRSALQVRAQ-----ELDRVPLEQRWMFEGDELDGPDIWNKTWYPKAADHVNTEKPWYVV 120
           KR  LQV+ +         VP  QRWMF+ +E +GPDIWN TWYPKA+DHVNT+KPW+VV
Sbjct: 61  KR-GLQVKCEAEPTTTTSLVPANQRWMFDEEEANGPDIWNTTWYPKASDHVNTDKPWFVV 120

Query: 121 DATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHS 180
           DATDKILGRLASTIANHIRGK+L +YTPSVDMGAFVIVVNAEK+AVSGKKR QKLYRRHS
Sbjct: 121 DATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLYRRHS 180

Query: 181 GRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPV 240
           GRPGGMTVETFDQLQQRIPERI+EHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKP+
Sbjct: 181 GRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEAQKPL 240

Query: 241 DLPIRDKRINKER 249
           DLPIRDKRI  ++
Sbjct: 241 DLPIRDKRIQLQK 241

[Close]

BLAST of CSPI04G22520 vs. TAIR 10
Match: AT3G01790.1 (Ribosomal protein L13 family protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-18
Identity = 47/125 (37.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA++I  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVD 237
            KP++
Sbjct: 152 DKPLE 155

[Close]

BLAST of CSPI04G22520 vs. TAIR 10
Match: AT3G01790.2 (Ribosomal protein L13 family protein )

HSP 1 Score: 90.1 bits (222), Expect = 2.7e-18
Identity = 47/125 (37.60%), Postives = 70/125 (56.00%), Query Frame = 0


Query: 112 WYVVDATDKILGRLASTIANHIRGKDLPTYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLY 171
           W V DA  ++LGRLAS I+  ++ KD PTY P+ D G   IV+NA++I  +G+K T K Y
Sbjct: 32  WRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNAKEIGFTGRKLTDKFY 91

Query: 172 RRHSGRPGGMTVETFDQLQQRIPERIIEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 231
           R H+G  G +   +      + P  +I  AV  MLP   L       L++++G +HP   
Sbjct: 92  RWHTGYIGHLKERSLKDQMAKDPTEVIRKAVWRMLPSNNLRDDRDRKLRIFEGGEHPF-G 151

Query: 232 QKPVD 237
            KP++
Sbjct: 152 DKPLE 155

The following BLAST results are available for this feature:

BLAST of CSPI04G22520 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYL9	2.6e-90	68.38	50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
P12629	1.7e-81	64.14	50S ribosomal protein L13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL13 P...	[more]
B8HMT1	1.2e-50	67.12	50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=39...	[more]
Q3MF94	5.8e-50	67.59	50S ribosomal protein L13 OS=Trichormus variabilis (strain ATCC 29413 / PCC 7937...	[more]
Q8YPK6	1.7e-49	66.90	50S ribosomal protein L13 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576...	[more]

BLAST of CSPI04G22520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZG1	9.9e-138	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G623380 PE=3 SV=1	[more]
A0A1S3CK07	1.5e-133	96.37	50S ribosomal protein L13, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501842...	[more]
A0A6J1FT16	7.4e-125	90.32	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IW42	3.1e-123	89.11	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F6Z3	1.2e-122	88.71	50S ribosomal protein L13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CSPI04G22520 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146016.1	2.1e-137	100.00	50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN55030.1 hypotheti...	[more]
XP_008463780.1	3.1e-133	96.37	PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo]	[more]
XP_023524699.1	1.2e-124	90.73	50S ribosomal protein L13, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022941245.1	1.5e-124	90.32	50S ribosomal protein L13, chloroplastic-like [Cucurbita moschata]	[more]
KAG6607943.1	4.4e-124	89.92	50S ribosomal protein L13, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]

BLAST of CSPI04G22520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78630.1	1.8e-91	68.38	Ribosomal protein L13 family protein	[more]
AT3G01790.1	2.7e-18	37.60	Ribosomal protein L13 family protein	[more]
AT3G01790.2	2.7e-18	37.60	Ribosomal protein L13 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005823	Ribosomal protein L13, bacterial-type	TIGRFAM	TIGR01066	TIGR01066	coord: 106..237 e-value: 2.2E-56 score: 187.5
IPR005822	Ribosomal protein L13	PFAM	PF00572	Ribosomal_L13	coord: 111..228 e-value: 1.2E-44 score: 151.2
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 66..245
IPR005822	Ribosomal protein L13	HAMAP	MF_01366	Ribosomal_L13	coord: 112..238 score: 27.330154
IPR005822	Ribosomal protein L13	CDD	cd00392	Ribosomal_L13	coord: 112..225 e-value: 2.64716E-65 score: 196.572
IPR036899	Ribosomal protein L13 superfamily	GENE3D	3.90.1180.10	Ribosomal protein L13	coord: 101..244 e-value: 4.0E-61 score: 207.0
IPR036899	Ribosomal protein L13 superfamily	SUPERFAMILY	52161	Ribosomal protein L13	coord: 106..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR11545:SF27	BNAA02G18970D PROTEIN	coord: 66..245
IPR023563	Ribosomal protein L13, conserved site	PROSITE	PS00783	RIBOSOMAL_L13	coord: 202..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G22520.1	CSPI04G22520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0017148	negative regulation of translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome