Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGGACTGTTACCGTGGATTAAGATAGAAGTAGAATTCTGTCGTTCGGTGGGGTTGGCCGAAATGATGAAATATGCATTGATGGTGGAAAATCGGGAAATTTTGAGGAGAGAGGCAAACCTTCCGGGGTACTCTATAGCCAAAATCACAAACTACCCCCACACTAATGCCAAAACGAATACGGTTAACAACGACCAAGCGAGTAAGGGAAACACTGTCTTTTCGATGAGGACGGTCACACTCAGAGGAGCTCTGGCGGCAGAGATTAAGAAAGAAGGGCCATCAAAAAGGTTATCCGACGTGGAGTTTCAGGCAAAAAGAGAAAAGAGACTCTGTTTCAAGTGTGATGAGAAATATTATTCAGGGCATAAGTGCAAAGCTAAGGAATTACATGAATTGCGAATGTTTGTAGTAAGGGCCGGTGACGTAGAGGAGGAAATCTTCGAGGAGGACGAGTATGAATAG
mRNA sequence
ATGGGGGGACTGTTACCGTGGATTAAGATAGAAGTAGAATTCTGTCGTTCGGTGGGGTTGGCCGAAATGATGAAATATGCATTGATGGTGGAAAATCGGGAAATTTTGAGGAGAGAGGCAAACCTTCCGGGGTACTCTATAGCCAAAATCACAAACTACCCCCACACTAATGCCAAAACGAATACGGTTAACAACGACCAAGCGAGTAAGGGAAACACTGTCTTTTCGATGAGGACGGTCACACTCAGAGGAGCTCTGGCGGCAGAGATTAAGAAAGAAGGGCCATCAAAAAGGTTATCCGACGTGGAGTTTCAGGCAAAAAGAGAAAAGAGACTCTGTTTCAAGTGTGATGAGAAATATTATTCAGGGCATAAGTGCAAAGCTAAGGAATTACATGAATTGCGAATGTTTGTAGTAAGGGCCGGTGACGTAGAGGAGGAAATCTTCGAGGAGGACGAGTATGAATAG
Coding sequence (CDS)
ATGGGGGGACTGTTACCGTGGATTAAGATAGAAGTAGAATTCTGTCGTTCGGTGGGGTTGGCCGAAATGATGAAATATGCATTGATGGTGGAAAATCGGGAAATTTTGAGGAGAGAGGCAAACCTTCCGGGGTACTCTATAGCCAAAATCACAAACTACCCCCACACTAATGCCAAAACGAATACGGTTAACAACGACCAAGCGAGTAAGGGAAACACTGTCTTTTCGATGAGGACGGTCACACTCAGAGGAGCTCTGGCGGCAGAGATTAAGAAAGAAGGGCCATCAAAAAGGTTATCCGACGTGGAGTTTCAGGCAAAAAGAGAAAAGAGACTCTGTTTCAAGTGTGATGAGAAATATTATTCAGGGCATAAGTGCAAAGCTAAGGAATTACATGAATTGCGAATGTTTGTAGTAAGGGCCGGTGACGTAGAGGAGGAAATCTTCGAGGAGGACGAGTATGAATAG
Protein sequence
MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE*
Homology
BLAST of CSPI04G21840 vs. ExPASy TrEMBL
Match:
A0A5A7T0Z9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001170 PE=4 SV=1)
HSP 1 Score: 167.9 bits (424), Expect = 3.3e-38
Identity = 90/155 (58.06%), Postives = 102/155 (65.81%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
M GL PWI+ EVEF + VGL +MM A E RE++RREANL GYS K P K+
Sbjct: 1 MNGLFPWIRDEVEFSKLVGLPQMMHLAQKAEVRELIRREANLYGYSRGKYLYNPANYNKS 60
Query: 61 NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
N N K M+T+ LR E+KKEG SKRLSD EF+AKREK LCFKCDEKY
Sbjct: 61 NNGANSNEGKARATTPMQTIILRSTAGGEVKKEGSSKRLSDAEFKAKREKGLCFKCDEKY 120
Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE 156
YSGHKCK E ELRMFVVRA +V EEI EE+ YE
Sbjct: 121 YSGHKCKELEQRELRMFVVRADNVREEIIEEEYYE 155
BLAST of CSPI04G21840 vs. ExPASy TrEMBL
Match:
A0A5D3CRH2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G001280 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 8.1e-37
Identity = 86/155 (55.48%), Postives = 107/155 (69.03%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
MGGL PWIK +VEFCR GLAEMM A + ENRE +R EA+L G++ K YP + +K
Sbjct: 17 MGGLFPWIKAKVEFCRPTGLAEMMLLAQLTENREKIRNEASLKGHNGGKYPFYPSSISKP 76
Query: 61 NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
NN + KGNT F MRT+TL+ E KKEG SKRLS+ EFQA++EK LCF+C+EKY
Sbjct: 77 ---NNSVSDKGNTTFPMRTITLKSNPIGETKKEGTSKRLSEAEFQARKEKGLCFRCNEKY 136
Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE 156
HKCK KE ELRM+V+++ D + EI EE YE
Sbjct: 137 SHDHKCKNKEQRELRMYVMKSEDEKFEIIEEANYE 168
BLAST of CSPI04G21840 vs. ExPASy TrEMBL
Match:
A0A5A7UFA3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1184G00340 PE=4 SV=1)
HSP 1 Score: 163.3 bits (412), Expect = 8.1e-37
Identity = 86/155 (55.48%), Postives = 107/155 (69.03%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
MGGL PWIK +VEFCR GLAEMM A + ENRE +R EA+L G++ K YP + +K
Sbjct: 17 MGGLFPWIKAKVEFCRPTGLAEMMLLAQLTENREKIRNEASLKGHNGGKYPFYPSSISKP 76
Query: 61 NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
NN + KGNT F MRT+TL+ E KKEG SKRLS+ EFQA++EK LCF+C+EKY
Sbjct: 77 ---NNSVSDKGNTTFPMRTITLKSNPIGETKKEGTSKRLSEAEFQARKEKGLCFRCNEKY 136
Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE 156
HKCK KE ELRM+V+++ D + EI EE YE
Sbjct: 137 SHDHKCKNKEQRELRMYVMKSEDEKFEIIEEANYE 168
BLAST of CSPI04G21840 vs. ExPASy TrEMBL
Match:
A0A5A7UMB5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11G00870 PE=4 SV=1)
HSP 1 Score: 162.5 bits (410), Expect = 1.4e-36
Identity = 88/153 (57.52%), Postives = 106/153 (69.28%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
M GLLPW++ EV FCRS GL EMM+ A MVENREI+R EA L GYS K+T + N K
Sbjct: 18 MNGLLPWVRSEVVFCRSKGLPEMMEVAQMVENREIVRIEAKLSGYSGGKLTGQVNGNGKV 77
Query: 61 NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
+ + SKGNT F +RT+TLR + E ++EG KRL D EFQA++EK LCF+C+EKY
Sbjct: 78 ASSSVAGESKGNTSFPIRTITLRSFGSNENRREGSYKRLLDAEFQARKEKGLCFRCNEKY 137
Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDE 154
+ HKCK KE HELRMFVV G E EI EE E
Sbjct: 138 SADHKCKMKEQHELRMFVVTEGKEEYEIVEEKE 170
BLAST of CSPI04G21840 vs. ExPASy TrEMBL
Match:
A0A5A7SZV1 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003060 PE=4 SV=1)
HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 87/153 (56.86%), Postives = 106/153 (69.28%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNA-- 60
M GLLPWI+ EV FCR GLAEMM+ A +VENREI+R EANL K N+PH++
Sbjct: 135 MNGLLPWIRAEVAFCRPKGLAEMMQVAQLVENREIIRNEANLNNSFGGK--NFPHSSTVN 194
Query: 61 KTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDE 120
K+ N KGNT F +RT+TLR + A E+KKE +RL D EFQA++EK LCF+C+E
Sbjct: 195 KSAVGNTSTEIKGNTTFPIRTITLRNSNANEVKKETNYRRLPDAEFQARKEKGLCFRCNE 254
Query: 121 KYYSGHKCKAKELHELRMFVVRAGDVEEEIFEE 152
KY + HKCK KELHELRMFVV + E EI EE
Sbjct: 255 KYSADHKCKMKELHELRMFVVAGENGEYEIIEE 285
BLAST of CSPI04G21840 vs. NCBI nr
Match:
XP_031737566.1 (uncharacterized protein LOC116402457 [Cucumis sativus])
HSP 1 Score: 176.0 bits (445), Expect = 2.5e-40
Identity = 91/127 (71.65%), Postives = 102/127 (80.31%), Query Frame = 0
Query: 29 MVENREILRREANLPGYSIAKITNYPHTNAKTNTVNNDQASKGNTVFSMRTVTLRGALAA 88
MVE REI RREANLPGYS KI+N + KT +Q +K NTVF +RT+TLRG+ A
Sbjct: 1 MVEQREIRRREANLPGYSGMKISNSSYPTTKTYAGLKEQGNKENTVFPIRTITLRGSPAK 60
Query: 89 EIKKEGPSKRLSDVEFQAKREKRLCFKCDEKYYSGHKCKAKELHELRMFVVRAGDVEEEI 148
EIKKEGPS+RLSD EFQAKREK LCFKCDEKYYSGHKCKAK++ ELRMFVVR DVEEEI
Sbjct: 61 EIKKEGPSRRLSDAEFQAKREKGLCFKCDEKYYSGHKCKAKDIRELRMFVVRDDDVEEEI 120
Query: 149 FEEDEYE 156
EEDEY+
Sbjct: 121 IEEDEYD 127
BLAST of CSPI04G21840 vs. NCBI nr
Match:
KAA0037154.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK13919.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 167.9 bits (424), Expect = 6.8e-38
Identity = 90/155 (58.06%), Postives = 102/155 (65.81%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
M GL PWI+ EVEF + VGL +MM A E RE++RREANL GYS K P K+
Sbjct: 1 MNGLFPWIRDEVEFSKLVGLPQMMHLAQKAEVRELIRREANLYGYSRGKYLYNPANYNKS 60
Query: 61 NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
N N K M+T+ LR E+KKEG SKRLSD EF+AKREK LCFKCDEKY
Sbjct: 61 NNGANSNEGKARATTPMQTIILRSTAGGEVKKEGSSKRLSDAEFKAKREKGLCFKCDEKY 120
Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE 156
YSGHKCK E ELRMFVVRA +V EEI EE+ YE
Sbjct: 121 YSGHKCKELEQRELRMFVVRADNVREEIIEEEYYE 155
BLAST of CSPI04G21840 vs. NCBI nr
Match:
XP_031745972.1 (uncharacterized protein LOC116406393 [Cucumis sativus])
HSP 1 Score: 166.8 bits (421), Expect = 1.5e-37
Identity = 90/158 (56.96%), Postives = 114/158 (72.15%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNA-- 60
M GL PWIK EV FC+ VGLAEMM A +VENREI+R+EANL GY+ K YP N+
Sbjct: 232 MNGLFPWIKAEVVFCKPVGLAEMMHAAQLVENREIIRKEANLNGYAKGK---YPPPNSSI 291
Query: 61 -KTNTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCD 120
+++ N KGNT+F +RTVTLR A E+KKEGP+KRL D EFQA++EK LCF+C+
Sbjct: 292 IRSSAAMNHSEDKGNTIFPIRTVTLRTA-TGEVKKEGPTKRLPDAEFQARKEKGLCFRCN 351
Query: 121 EKYYSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE 156
EKY+ GH+CK +E ELRM+VV+ D E EI EE E++
Sbjct: 352 EKYFHGHRCKGREQRELRMYVVKE-DEEYEIVEEAEWD 384
BLAST of CSPI04G21840 vs. NCBI nr
Match:
TYK14463.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 86/155 (55.48%), Postives = 107/155 (69.03%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
MGGL PWIK +VEFCR GLAEMM A + ENRE +R EA+L G++ K YP + +K
Sbjct: 17 MGGLFPWIKAKVEFCRPTGLAEMMLLAQLTENREKIRNEASLKGHNGGKYPFYPSSISKP 76
Query: 61 NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
NN + KGNT F MRT+TL+ E KKEG SKRLS+ EFQA++EK LCF+C+EKY
Sbjct: 77 ---NNSVSDKGNTTFPMRTITLKSNPIGETKKEGTSKRLSEAEFQARKEKGLCFRCNEKY 136
Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE 156
HKCK KE ELRM+V+++ D + EI EE YE
Sbjct: 137 SHDHKCKNKEQRELRMYVMKSEDEKFEIIEEANYE 168
BLAST of CSPI04G21840 vs. NCBI nr
Match:
KAA0052896.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 163.3 bits (412), Expect = 1.7e-36
Identity = 86/155 (55.48%), Postives = 107/155 (69.03%), Query Frame = 0
Query: 1 MGGLLPWIKIEVEFCRSVGLAEMMKYALMVENREILRREANLPGYSIAKITNYPHTNAKT 60
MGGL PWIK +VEFCR GLAEMM A + ENRE +R EA+L G++ K YP + +K
Sbjct: 17 MGGLFPWIKAKVEFCRPTGLAEMMLLAQLTENREKIRNEASLKGHNGGKYPFYPSSISKP 76
Query: 61 NTVNNDQASKGNTVFSMRTVTLRGALAAEIKKEGPSKRLSDVEFQAKREKRLCFKCDEKY 120
NN + KGNT F MRT+TL+ E KKEG SKRLS+ EFQA++EK LCF+C+EKY
Sbjct: 77 ---NNSVSDKGNTTFPMRTITLKSNPIGETKKEGTSKRLSEAEFQARKEKGLCFRCNEKY 136
Query: 121 YSGHKCKAKELHELRMFVVRAGDVEEEIFEEDEYE 156
HKCK KE ELRM+V+++ D + EI EE YE
Sbjct: 137 SHDHKCKNKEQRELRMYVMKSEDEKFEIIEEANYE 168
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T0Z9 | 3.3e-38 | 58.06 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3CRH2 | 8.1e-37 | 55.48 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7UFA3 | 8.1e-37 | 55.48 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7UMB5 | 1.4e-36 | 57.52 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7SZV1 | 1.2e-35 | 56.86 | Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003060... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_031737566.1 | 2.5e-40 | 71.65 | uncharacterized protein LOC116402457 [Cucumis sativus] | [more] |
| KAA0037154.1 | 6.8e-38 | 58.06 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK13919.1 ty3-gyp... | [more] |
| XP_031745972.1 | 1.5e-37 | 56.96 | uncharacterized protein LOC116406393 [Cucumis sativus] | [more] |
| TYK14463.1 | 1.7e-36 | 55.48 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0052896.1 | 1.7e-36 | 55.48 | Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
