CSPI04G21190 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G21190
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	protein cornichon homolog 1 isoform X2
Location	Chr4: 19631179 .. 19632587 (+)
RNA-Seq Expression	CSPI04G21190
Synteny	CSPI04G21190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTTTTTTCTTGGTGTGTTTATGACATGTATTATTCGGTTACAATGTCTCAGATTTTTGAAGAGGGAGCACCTTATTGATGTCACCGAGGTATTTAGAGCTCTTAAGCGTGAGAAGTATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTTTTCCTCGTAGTAATTTTCAGGTCAGTTTGCATTTTTCATTTTCTCATTCCTCTCAGCTATTTCGAAGTTGGTATTTTCCTGATTGAAGTTTTCTTTATTATTTTCTGTATAGAATAATAGTGGTTGCGGGAATGAAATCTGTTTTTGACTCTGCACCTGAAGATTTAGACATTCGCTCCTCTGTTCTCGAATTCTAGAGTTTTTTACTTAACCATTTATCATTCCTTTTGAAATATATACACGACTACATTTGACATTATCTTCTTTTTTATTCATTGCAAAGTTCTTAAAGATGACGTTGCTCTAATTTTGAGCTTGTTATGTTGGTTTGGGAACCTATACACCATATTTCTCTCTATTGCCTTGGTGCTAAGTATGTTGTTACAGTAATGCATTACTCCAGGATCTTGCACTTTGTTCTGTTTGCAATTCGTGCTTCTTTGTAGCTTTTGCTGGTCCAGTATGTGATATAACTTAATTCAGGATGTTTATAGCTTTTCAAATTTTAAAGAGATGTTGCATTTTGTTATTTTATGGAGGACTCCCATGCTTCTCAACATCCCGGTACATATGCACACGTATACACATGTATTGTTCATCCATGATGTATCGAGGTTTCATTTCGTCTTACCAATAAAGATAAAGCACGAACATTGATGTTGTTCATTTGGAACTTCACCATCTTACTAGCATTCTTACCTGTATTCAATTAACATGTAATGCAGGCTTACTTTGTCTGCATTCAACTCCTTATCTGACGAAGACGATGTCCTACATTTATTTTGATTGCCATTTTGATATCCGAAGTTTGTATTACGGGTTCTATCGTGCATCGGGTTGATATTTATGTGGGAATTACACGAAGGGAATGAATTTGGACTCAGCAACTTCAAACACATTCAAACAGGTTTTCTCGATTCCCATTCTATAGTTTGGTAGGCTTCAGTAGCAATCTCATTGACTTACACCTAAGGAATTCTTGTATGTAGAAGATAGCATTGTAGGCATATTATGTGATTTGATTTGTTTTGGTACCTTCCTTAACTCACTGCTAAGTACTGCTAAGTTGAGGGACCTTCAAGATTAGGGTTTCATATTTTATCATTTTTGGAATATCAACTCGTTTCAAGTTTTAGTGTTTTTGTAAGGATTGAAATGATTTTCATCATTCAATACCTAACAATTGTATTAAGTGTTGTTCTCTTCAAAGGATACATTTTTACTAACATTGTAAACTATTTTTAGGGCTTGT

mRNA sequence

TATTTTTTTTCTTGGTGTGTTTATGACATGTATTATTCGGTTACAATGTCTCAGATTTTTGAAGAGGGAGCACCTTATTGATGTCACCGAGGTATTTAGAGCTCTTAAGCGTGAGAAGTATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTTTTCCTCGTAGTAATTTTCAGGCTTACTTTGTCTGCATTCAACTCCTTATCTGACGAAGACGATGTCCTACATTTATTTTGATTGCCATTTTGATATCCGAAGTTTGTATTACGGGTTCTATCGTGCATCGGGTTGATATTTATGTGGGAATTACACGAAGGGAATGAATTTGGACTCAGCAACTTCAAACACATTCAAACAGGTTTTCTCGATTCCCATTCTATAGTTTGGTAGGCTTCAGTAGCAATCTCATTGACTTACACCTAAGGAATTCTTGTATGTAGAAGATAGCATTGTAGGCATATTATGTGATTTGATTTGTTTTGGTACCTTCCTTAACTCACTGCTAAGTACTGCTAAGTTGAGGGACCTTCAAGATTAGGGTTTCATATTTTATCATTTTTGGAATATCAACTCGTTTCAAGTTTTAGTGTTTTTGTAAGGATTGAAATGATTTTCATCATTCAATACCTAACAATTGTATTAAGTGTTGTTCTCTTCAAAGGATACATTTTTACTAACATTGTAAACTATTTTTAGGGCTTGT

Coding sequence (CDS)

ATGACATGTATTATTCGGTTACAATGTCTCAGATTTTTGAAGAGGGAGCACCTTATTGATGTCACCGAGGTATTTAGAGCTCTTAAGCGTGAGAAGTATTTCCGTTTGGCCAAGCTTATCTTCTACTTGCTTCTTTTCCTCGTAGTAATTTTCAGGCTTACTTTGTCTGCATTCAACTCCTTATCTGACGAAGACGATGTCCTACATTTATTTTGA

Protein sequence

MTCIIRLQCLRFLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF*

Homology

[Close]

BLAST of CSPI04G21190 vs. ExPASy Swiss-Prot
Match: Q9C7D7 (Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 9.9e-11
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           + +R +LIDVTEVFR +  EK  R  KL FY+ LF++V+FRLTLSA  S +++DD+LHLF
Sbjct: 87  YKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIMVVFRLTLSAVYSFTEDDDLLHLF 146

[Close]

BLAST of CSPI04G21190 vs. ExPASy TrEMBL
Match: A0A1S3B4V0 (protein cornichon homolog 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486176 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.2e-21
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFL+VIFRLTLSAFNSLSDED+VLHLF
Sbjct: 87  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRLTLSAFNSLSDEDNVLHLF 146

[Close]

BLAST of CSPI04G21190 vs. ExPASy TrEMBL
Match: A0A6J1EKZ6 (protein cornichon homolog 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435524 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-21
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]

BLAST of CSPI04G21190 vs. ExPASy TrEMBL
Match: A0A6J1HS45 (protein cornichon homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111467288 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.8e-21
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDD+LHLF
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDILHLF 146

[Close]

BLAST of CSPI04G21190 vs. ExPASy TrEMBL
Match: A0A6J1HTX3 (protein cornichon homolog 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466123 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLKREHLIDVTEVF+ LKREKYFR AKLIFYLLLFLVVIFRLTLSAFN+LSDEDDVLHLF
Sbjct: 87  FLKREHLIDVTEVFKTLKREKYFRFAKLIFYLLLFLVVIFRLTLSAFNALSDEDDVLHLF 146

[Close]

BLAST of CSPI04G21190 vs. ExPASy TrEMBL
Match: A0A6J1DFC9 (protein cornichon homolog 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111019577 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.9e-20
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLKREHLIDVTEVFR LKREKYFRL KLIFYLL+FL+VIFRLTLSAFNSLSDEDD++HLF
Sbjct: 87  FLKREHLIDVTEVFRVLKREKYFRLGKLIFYLLMFLIVIFRLTLSAFNSLSDEDDIIHLF 146

[Close]

BLAST of CSPI04G21190 vs. NCBI nr
Match: XP_004144657.1 (protein cornichon homolog 1 isoform X2 [Cucumis sativus] >KGN55348.2 hypothetical protein Csa_012541 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 9.2e-22
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF
Sbjct: 87  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]

BLAST of CSPI04G21190 vs. NCBI nr
Match: XP_038883916.1 (protein cornichon homolog 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 1.2e-21
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFL+VIFRLTLSAFNSLSDEDDVLHLF
Sbjct: 87  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]

BLAST of CSPI04G21190 vs. NCBI nr
Match: XP_008442270.1 (PREDICTED: protein cornichon homolog 1 isoform X2 [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 4.5e-21
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFL+VIFRLTLSAFNSLSDED+VLHLF
Sbjct: 87  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLIVIFRLTLSAFNSLSDEDNVLHLF 146

[Close]

BLAST of CSPI04G21190 vs. NCBI nr
Match: XP_022928681.1 (protein cornichon homolog 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-21
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]

BLAST of CSPI04G21190 vs. NCBI nr
Match: XP_023543606.1 (protein cornichon homolog 1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 5.9e-21
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           FLK+EHLIDVTEVFR LKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF
Sbjct: 87  FLKKEHLIDVTEVFRTLKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 146

[Close]

BLAST of CSPI04G21190 vs. TAIR 10
Match: AT3G12180.1 (Cornichon family protein )

HSP 1 Score: 67.0 bits (162), Expect = 7.0e-12
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 12  FLKREHLIDVTEVFRALKREKYFRLAKLIFYLLLFLVVIFRLTLSAFNSLSDEDDVLHLF 71
           + +R +LIDVTEVFR +  EK  R  KL FY+ LF++V+FRLTLSA  S +++DD+LHLF
Sbjct: 87  YKERRYLIDVTEVFRGISFEKKLRYTKLGFYVFLFIMVVFRLTLSAVYSFTEDDDLLHLF 146

The following BLAST results are available for this feature:

BLAST of CSPI04G21190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7D7	9.9e-11	56.67	Protein cornichon homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At3g12180 PE=2 SV...	[more]

BLAST of CSPI04G21190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B4V0	2.2e-21	96.67	protein cornichon homolog 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486176 P...	[more]
A0A6J1EKZ6	2.9e-21	96.67	protein cornichon homolog 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A6J1HS45	3.8e-21	95.00	protein cornichon homolog 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1HTX3	1.9e-20	93.33	protein cornichon homolog 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1DFC9	1.9e-20	90.00	protein cornichon homolog 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of CSPI04G21190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144657.1	9.2e-22	100.00	protein cornichon homolog 1 isoform X2 [Cucumis sativus] >KGN55348.2 hypothetica...	[more]
XP_038883916.1	1.2e-21	98.33	protein cornichon homolog 1 isoform X2 [Benincasa hispida]	[more]
XP_008442270.1	4.5e-21	96.67	PREDICTED: protein cornichon homolog 1 isoform X2 [Cucumis melo]	[more]
XP_022928681.1	5.9e-21	96.67	protein cornichon homolog 1-like isoform X2 [Cucurbita moschata]	[more]
XP_023543606.1	5.9e-21	96.67	protein cornichon homolog 1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI04G21190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12180.1	7.0e-12	56.67	Cornichon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003377	Cornichon	PFAM	PF03311	Cornichon	coord: 8..51 e-value: 2.1E-8 score: 34.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21190.1	CSPI04G21190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane