CSPI04G21010 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G21010
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 19448117 .. 19448311 (-)
RNA-Seq Expression	CSPI04G21010
Synteny	CSPI04G21010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAGCTTCTCATCTCCAATGCCTTCTTGGTTGCCTCCTTTATCCTTGCCCTCTGCTTCGCCGCCTCCTTGGGATCCCCTGCTCCTGCTCCGGCGCCTGACGCTGGATCTGGCTGTTCTCTCCCAGTCTCCGCCGCCGTCGTTGCCTCTTCTCTTCTCCTCTCTCTTATTCACCTTCTCAGACATTCATTT

mRNA sequence

ATGGCCAAGCTTCTCATCTCCAATGCCTTCTTGGTTGCCTCCTTTATCCTTGCCCTCTGCTTCGCCGCCTCCTTGGGATCCCCTGCTCCTGCTCCGGCGCCTGACGCTGGATCTGGCTGTTCTCTCCCAGTCTCCGCCGCCGTCGTTGCCTCTTCTCTTCTCCTCTCTCTTATTCACCTTCTCAGACATTCATTT

Coding sequence (CDS)

ATGGCCAAGCTTCTCATCTCCAATGCCTTCTTGGTTGCCTCCTTTATCCTTGCCCTCTGCTTCGCCGCCTCCTTGGGATCCCCTGCTCCTGCTCCGGCGCCTGACGCTGGATCTGGCTGTTCTCTCCCAGTCTCCGCCGCCGTCGTTGCCTCTTCTCTTCTCCTCTCTCTTATTCACCTTCTCAGACATTCATTT

Protein sequence

MAKLLISNAFLVASFILALCFAASLGSPAPAPAPDAGSGCSLPVSAAVVASSLLLSLIHLLRHSF

Homology

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BLAST of CSPI04G21010 vs. ExPASy TrEMBL
Match: M1CLJ9 (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 0


Query: 1  MAKLLISNAFLVASFILALCFAASLGSPAPAPAPDAGSGCSLPVSAAVVASSLLLSLIHL 60
          MA + I  AF++A F+ A+  +A   S APAPAPDAG+  SLPVS A++ +SLL+SL  +
Sbjct: 1  MASVSIIKAFVLAVFLAAVVVSAQEPSLAPAPAPDAGAAFSLPVSGALIGTSLLMSLFAV 60

Query: 61 LRH 64
          LRH
Sbjct: 61 LRH 63

The following BLAST results are available for this feature:

BLAST of CSPI04G21010 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G21010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M1CLJ9	6.4e-04	52.38	Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1	[more]

BLAST of CSPI04G21010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of CSPI04G21010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33659:SF11	SUBFAMILY NOT NAMED	coord: 1..63
None	No IPR available	PANTHER	PTHR33659	PROTEIN, PUTATIVE-RELATED-RELATED	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G21010.1	CSPI04G21010.1	mRNA