CSPI04G19830 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G19830
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr4: 17654720 .. 17655679 (-)
RNA-Seq Expression	CSPI04G19830
Synteny	CSPI04G19830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATGATGACTTCACCAAATTTAGCACTGCCAAATTTTACATTGCCGTTTAAAATAGAGACTGACACATCAGGTTATGGAATAGGTGATGTACTTACTCAGAATAATCGACCAATACCCTATTTCAGTCACACTTTGGCCATGGGAGATAGAGCCAAGCCAGTCTATGAACGAGAATTAATGGTTGTAGTATACGCAAACCAACGATGGAAACCATATCTTTTGGGAAGGAGATTTGTAGTTAAAACGGATCAGCGCTCATTGAAGTTTTTATTAGAGCAGAGGGTTATTCAACCTCAACATCAAAGGTGGATGGCTAAATTGCTGGGGTACAATTTTGATGTAGTGTACAAACCTGGCCTTGAAAACAAAGCAGCAGACGCACTATCGAGGGTCCCTCCAACGGTACATCTAAATCATCTCATTGCTCCAGCCTTGCTGGACACATCAGTCCTTAAAACAGAAGTGGAAGAGGATGTCAAGTTGAAGGAAATCATCGCAAAGTTAGAAAAGAGTGAAGCAATTTCTGGTTTTGCTATGCATCAAGGCATGCTGAGGAAGAGACGATTGGTGACATGAAAGAATTCGGTCCTATTGCCTATGGTTCTTCACACTTATCATGACTCAGTCTTTGGAGGCCATTTGGGATGCTTGACGGCTTATAAAAGATTAACAGGTGAGCTATATCGGGAAGGGATGAAAGTTGATGTGCAAAAATACTGTGAGGAATGTTTGGCCTGTCAACGTAACAAAACAATGGCTTTATCACCTGCCGGATTACTCATGTCCCTAGAAATAGCAGATGCGGTTTGGAGCGAGATATCTATGGACTTCATTGATGGCCTACCTAAATCCAAAGGACATGAGGTAATACTTGTTGTAGATATATTTTTGAAACGGAGACAAACCTCTTTATTAAATGAGACTAATGCTCAAAGTATAAGAGAATTATACTAA

mRNA sequence

ATGGCCATGATGACTTCACCAAATTTAGCACTGCCAAATTTTACATTGCCGTTTAAAATAGAGACTGACACATCAGGTTATGGAATAGGTGATGTACTTACTCAGAATAATCGACCAATACCCTATTTCAGTCACACTTTGGCCATGGGAGATAGAGCCAAGCCAGTCTATGAACGAGAATTAATGGTTGTAGTATACGCAAACCAACGATGGAAACCATATCTTTTGGGAAGGAGATTTGTAGTTAAAACGGATCAGCGCTCATTGAAGTTTTTATTAGAGCAGAGGGTTATTCAACCTCAACATCAAAGGTGGATGGCTAAATTGCTGGGGTACAATTTTGATGTAGTGTACAAACCTGGCCTTGAAAACAAAGCAGCAGACGCACTATCGAGGGTCCCTCCAACGGTACATCTAAATCATCTCATTGCTCCAGCCTTGCTGGACACATCAGTCCTTAAAACAGAAGTGGAAGAGGATGTCAAGTTGAAGGAAATCATCGCAAAGTTAGAAAAGAGTGAAGCAATTTCTGTCTTTGGAGGCCATTTGGGATGCTTGACGGCTTATAAAAGATTAACAGGTGAGCTATATCGGGAAGGGATGAAAGTTGATGTGCAAAAATACTGTGAGGAATGTTTGGCCTGTCAACGTAACAAAACAATGGCTTTATCACCTGCCGGATTACTCATGTCCCTAGAAATAGCAGATGCGGTTTGGAGCGAGATATCTATGGACTTCATTGATGGCCTACCTAAATCCAAAGGACATGAGGTAATACTTGTTGTAGATATATTTTTGAAACGGAGACAAACCTCTTTATTAAATGAGACTAATGCTCAAAGTATAAGAGAATTATACTAA

Coding sequence (CDS)

ATGGCCATGATGACTTCACCAAATTTAGCACTGCCAAATTTTACATTGCCGTTTAAAATAGAGACTGACACATCAGGTTATGGAATAGGTGATGTACTTACTCAGAATAATCGACCAATACCCTATTTCAGTCACACTTTGGCCATGGGAGATAGAGCCAAGCCAGTCTATGAACGAGAATTAATGGTTGTAGTATACGCAAACCAACGATGGAAACCATATCTTTTGGGAAGGAGATTTGTAGTTAAAACGGATCAGCGCTCATTGAAGTTTTTATTAGAGCAGAGGGTTATTCAACCTCAACATCAAAGGTGGATGGCTAAATTGCTGGGGTACAATTTTGATGTAGTGTACAAACCTGGCCTTGAAAACAAAGCAGCAGACGCACTATCGAGGGTCCCTCCAACGGTACATCTAAATCATCTCATTGCTCCAGCCTTGCTGGACACATCAGTCCTTAAAACAGAAGTGGAAGAGGATGTCAAGTTGAAGGAAATCATCGCAAAGTTAGAAAAGAGTGAAGCAATTTCTGTCTTTGGAGGCCATTTGGGATGCTTGACGGCTTATAAAAGATTAACAGGTGAGCTATATCGGGAAGGGATGAAAGTTGATGTGCAAAAATACTGTGAGGAATGTTTGGCCTGTCAACGTAACAAAACAATGGCTTTATCACCTGCCGGATTACTCATGTCCCTAGAAATAGCAGATGCGGTTTGGAGCGAGATATCTATGGACTTCATTGATGGCCTACCTAAATCCAAAGGACATGAGGTAATACTTGTTGTAGATATATTTTTGAAACGGAGACAAACCTCTTTATTAAATGAGACTAATGCTCAAAGTATAAGAGAATTATACTAA

Protein sequence

MAMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLEKSEAISVFGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVVDIFLKRRQTSLLNETNAQSIRELY*

Homology

[Close]

BLAST of CSPI04G19830 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-19
Identity = 88/332 (26.51%), Postives = 138/332 (41.57%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRP------IPYFSHTLAMGDRAKP 61
            A+  SP L   N    +++ TD S  GIG VL + +        + YFS +L    +  P
Sbjct: 872  ALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYP 931

Query: 62   VYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFD 121
              E EL+ ++ A   ++  L G+ F ++TD  SL  L  +     + QRW+  L  Y+F 
Sbjct: 932  AGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFT 991

Query: 122  VVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEED-------VKLKEII- 181
            + Y  G +N  ADA+SR   T+          +DT   K+  + D       + +KE+  
Sbjct: 992  LEYLAGPKNVVADAISRAVYTITPE---TSRPIDTESWKSYYKSDPLCSAVLIHMKELTQ 1051

Query: 182  ---------------AKLEKSEAI----------------------------------SV 241
                            KLE SE                                    ++
Sbjct: 1052 HNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTL 1111

Query: 242  FGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAV 269
            FGGH G      +++   Y   ++  + +Y   C+ CQ  K+      GLL  L IA+  
Sbjct: 1112 FGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGR 1171

[Close]

BLAST of CSPI04G19830 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19
Identity = 88/332 (26.51%), Postives = 138/332 (41.57%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRP------IPYFSHTLAMGDRAKP 61
            A+  SP L   N    +++ TD S  GIG VL + +        + YFS +L    +  P
Sbjct: 898  ALCNSPVLVPFNNKANYRLTTDASKDGIGAVLEEVDNKNKLVGVVGYFSKSLESAQKNYP 957

Query: 62   VYERELMVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFD 121
              E EL+ ++ A   ++  L G+ F ++TD  SL  L  +     + QRW+  L  Y+F 
Sbjct: 958  AGELELLGIIKALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFT 1017

Query: 122  VVYKPGLENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEED-------VKLKEII- 181
            + Y  G +N  ADA+SR   T+          +DT   K+  + D       + +KE+  
Sbjct: 1018 LEYLAGPKNVVADAISRAIYTITPE---TSRPIDTESWKSYYKSDPLCSAVLIHMKELTQ 1077

Query: 182  ---------------AKLEKSEAI----------------------------------SV 241
                            KLE SE                                    ++
Sbjct: 1078 HNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQQNAVMRLYHDHTL 1137

Query: 242  FGGHLGCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAV 269
            FGGH G      +++   Y   ++  + +Y   C+ CQ  K+      GLL  L IA+  
Sbjct: 1138 FGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGR 1197

[Close]

BLAST of CSPI04G19830 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.6e-19
Identity = 52/141 (36.88%), Postives = 81/141 (57.45%), Query Frame = 0


Query: 3   MMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQN----NRPIPYFSHTLAMGDRAKPVYE 62
           + +S  LA P FT PF + TD S + IG VL+Q+    +RPI Y S +L   +      E
Sbjct: 420 LCSSEILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIE 479

Query: 63  RELMVVVYANQRWKPYLLGRRFV-VKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVV 122
           +E++ ++++    + YL G   + V TD + L F L  R    + +RW A++  YN +++
Sbjct: 480 KEMLAIIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELI 539

Query: 123 YKPGLENKAADALSRVPPTVH 139
           YKPG  N  ADALSR+PP ++
Sbjct: 540 YKPGKSNVVADALSRIPPQLN 560

[Close]

BLAST of CSPI04G19830 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 7.9e-19
Identity = 48/127 (37.80%), Postives = 73/127 (57.48%), Query Frame = 0


Query: 7   PNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYERELMVVVY 66
           P L +P+FT  F + TD S   +G VL+Q+  P+ Y S TL   +      E+EL+ +V+
Sbjct: 498 PILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVW 557

Query: 67  ANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPGLENKA 126
           A + ++ YLLGR F + +D + L +L   +    +  RW  KL  ++FD+ Y  G EN  
Sbjct: 558 ATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCV 617

Query: 127 ADALSRV 134
           ADALSR+
Sbjct: 618 ADALSRI 624

[Close]

BLAST of CSPI04G19830 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.0e-18
Identity = 82/325 (25.23%), Postives = 138/325 (42.46%), Query Frame = 0


Query: 3    MMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNN-----RPIPYFSHTLAMGDRAKPVY 62
            +++ P L   +F+    +ETD S   +G VL+Q +      P+ Y+S  ++       V 
Sbjct: 693  LVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVS 752

Query: 63   ERELMVVVYANQRWKPYLLG--RRFVVKTDQRSL--KFLLEQRVIQPQHQRWMAKLLGYN 122
            ++E++ ++ + + W+ YL      F + TD R+L  +   E      +  RW   L  +N
Sbjct: 753  DKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFN 812

Query: 123  FDVVYKPGLENKAADALSRVPPTVH-----------------------LNHLIAPALLDT 182
            F++ Y+PG  N  ADALSR+                             N ++     DT
Sbjct: 813  FEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDT 872

Query: 183  SVLK------TEVEEDVKLKE---------------------IIAKLEKSEAISVFGGHL 242
             +L         VEE+++LK+                     II K  +   +   G  L
Sbjct: 873  KLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIEL 932

Query: 243  GCLTAYKRLTGELYREGMKVDVQKYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEIS 268
                  +R T     +G++  +Q+Y + C  CQ NK+    P G L  +  ++  W  +S
Sbjct: 933  LTNIILRRFTW----KGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLS 992

[Close]

BLAST of CSPI04G19830 vs. ExPASy TrEMBL
Match: A0A5D3CXB1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001180 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 7.0e-95
Identity = 181/296 (61.15%), Postives = 220/296 (74.32%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYEREL
Sbjct: 961  AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYEREL 1020

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            M VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 1021 MAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 1080

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E          
Sbjct: 1081 LENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYT 1140

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 1141 CHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQ 1200

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Sbjct: 1201 KYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVV 1256

[Close]

BLAST of CSPI04G19830 vs. ExPASy TrEMBL
Match: A0A5D3DI73 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00700 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 7.0e-95
Identity = 181/296 (61.15%), Postives = 220/296 (74.32%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYEREL
Sbjct: 901  AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYEREL 960

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            M VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 961  MAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 1020

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E          
Sbjct: 1021 LENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYT 1080

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 1081 CHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQ 1140

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Sbjct: 1141 KYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVV 1196

[Close]

BLAST of CSPI04G19830 vs. ExPASy TrEMBL
Match: A0A5A7SIV7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00310 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 7.0e-95
Identity = 181/296 (61.15%), Postives = 220/296 (74.32%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYEREL
Sbjct: 1221 AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYEREL 1280

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            M VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 1281 MAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 1340

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E          
Sbjct: 1341 LENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYT 1400

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 1401 CHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQ 1460

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Sbjct: 1461 KYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVV 1516

[Close]

BLAST of CSPI04G19830 vs. ExPASy TrEMBL
Match: A0A5A7U6J3 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G001310 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 9.2e-95
Identity = 181/296 (61.15%), Postives = 220/296 (74.32%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYEREL
Sbjct: 901  AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYEREL 960

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            M VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 961  MAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 1020

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E          
Sbjct: 1021 LENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYT 1080

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 1081 CHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKRDVQ 1140

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Sbjct: 1141 KYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVV 1196

[Close]

BLAST of CSPI04G19830 vs. ExPASy TrEMBL
Match: A0A5A7V7S9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001230 PE=4 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 1.6e-94
Identity = 182/296 (61.49%), Postives = 219/296 (73.99%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q  RP+ YFS  L+M DRA+PVYEREL
Sbjct: 763  AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYEREL 822

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            + VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 823  IAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 882

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EII+ +E          
Sbjct: 883  LENKAADALSRIGPTAHLNQLTAPALLDVEVIQREVRKDPALREIISLIEEQGIEIPRYT 942

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 943  CHQGILKFKGRLVLSKTSILIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQ 1002

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYC+EC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI GLPKS G EVILVV
Sbjct: 1003 KYCDECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIKGLPKSHGWEVILVV 1058

[Close]

BLAST of CSPI04G19830 vs. NCBI nr
Match: TYK23090.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 1.5e-94
Identity = 181/296 (61.15%), Postives = 220/296 (74.32%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYEREL
Sbjct: 901  AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYEREL 960

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            M VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 961  MAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 1020

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E          
Sbjct: 1021 LENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYT 1080

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 1081 CHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQ 1140

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Sbjct: 1141 KYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVV 1196

[Close]

BLAST of CSPI04G19830 vs. NCBI nr
Match: TYK15990.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 1.5e-94
Identity = 181/296 (61.15%), Postives = 220/296 (74.32%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYEREL
Sbjct: 961  AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYEREL 1020

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            M VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 1021 MAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 1080

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E          
Sbjct: 1081 LENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYT 1140

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 1141 CHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQ 1200

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Sbjct: 1201 KYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVV 1256

[Close]

BLAST of CSPI04G19830 vs. NCBI nr
Match: KAA0025132.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 357.1 bits (915), Expect = 1.5e-94
Identity = 181/296 (61.15%), Postives = 220/296 (74.32%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYEREL
Sbjct: 1221 AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYEREL 1280

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            M VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 1281 MAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 1340

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E          
Sbjct: 1341 LENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYT 1400

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 1401 CHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQ 1460

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Sbjct: 1461 KYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVV 1516

[Close]

BLAST of CSPI04G19830 vs. NCBI nr
Match: KAA0049776.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.7 bits (914), Expect = 1.9e-94
Identity = 181/296 (61.15%), Postives = 220/296 (74.32%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q+ +P+ YFS  L+  DRA+PVYEREL
Sbjct: 901  AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQDKKPVAYFSKVLSTRDRARPVYEREL 960

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            M VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 961  MAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 1020

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EI++ +E          
Sbjct: 1021 LENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREILSMIEEQGIEIPHYT 1080

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 1081 CHQGILKFKGRLVLSKASTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKRDVQ 1140

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYCEEC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI+GLPKS G EVILVV
Sbjct: 1141 KYCEECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIEGLPKSYGWEVILVV 1196

[Close]

BLAST of CSPI04G19830 vs. NCBI nr
Match: KAA0063300.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 355.9 bits (912), Expect = 3.2e-94
Identity = 182/296 (61.49%), Postives = 219/296 (73.99%), Query Frame = 0


Query: 2    AMMTSPNLALPNFTLPFKIETDTSGYGIGDVLTQNNRPIPYFSHTLAMGDRAKPVYEREL 61
            AMMT P LA+P+F LPF+IE+D SG+G+G VL Q  RP+ YFS  L+M DRA+PVYEREL
Sbjct: 763  AMMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYEREL 822

Query: 62   MVVVYANQRWKPYLLGRRFVVKTDQRSLKFLLEQRVIQPQHQRWMAKLLGYNFDVVYKPG 121
            + VV+A QRW+PYLLGR+F VKTDQRSLKFLLEQRVIQPQ+Q+W+AKLLGY+F+V+YKPG
Sbjct: 823  IAVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPG 882

Query: 122  LENKAADALSRVPPTVHLNHLIAPALLDTSVLKTEVEEDVKLKEIIAKLE---------- 181
            LENKAADALSR+ PT HLN L APALLD  V++ EV +D  L+EII+ +E          
Sbjct: 883  LENKAADALSRIGPTAHLNQLTAPALLDVEVIQREVRKDPALREIISLIEEQGIEIPRYT 942

Query: 182  ---------------KSEAI----------SVFGGHLGCLTAYKRLTGELYREGMKVDVQ 241
                           K+  +          SVFGGH G L  YKR+ GELY +GMK DVQ
Sbjct: 943  CHQGILKFKGRLVLSKTSILIPTIMHTYHDSVFGGHSGFLRTYKRMAGELYWKGMKKDVQ 1002

Query: 242  KYCEECLACQRNKTMALSPAGLLMSLEIADAVWSEISMDFIDGLPKSKGHEVILVV 263
            KYC+EC+ CQ+NK+ ALSPAGLL+ LEI DA+WS+ISMDFI GLPKS G EVILVV
Sbjct: 1003 KYCDECMICQKNKSSALSPAGLLLPLEIPDAIWSDISMDFIKGLPKSHGWEVILVV 1058

The following BLAST results are available for this feature:

BLAST of CSPI04G19830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	1.2e-19	26.51	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.6e-19	26.51	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	4.6e-19	36.88	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	7.9e-19	37.80	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q9UR07	1.0e-18	25.23	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of CSPI04G19830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CXB1	7.0e-95	61.15	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DI73	7.0e-95	61.15	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SIV7	7.0e-95	61.15	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U6J3	9.2e-95	61.15	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V7S9	1.6e-94	61.49	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI04G19830 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK23090.1	1.5e-94	61.15	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK15990.1	1.5e-94	61.15	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025132.1	1.5e-94	61.15	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0049776.1	1.9e-94	61.15	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063300.1	3.2e-94	61.49	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G19830 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.340.70		coord: 150..219 e-value: 2.9E-7 score: 32.6
None	No IPR available	GENE3D	3.10.20.370		coord: 14..84 e-value: 1.0E-5 score: 27.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..261
None	No IPR available	PANTHER	PTHR24559:SF360	SUBFAMILY NOT NAMED	coord: 5..261
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 20..134 e-value: 3.38059E-45 score: 146.869
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 14..112 e-value: 6.7E-23 score: 81.0
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 177..220 e-value: 3.6E-9 score: 36.5
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G19830.1	CSPI04G19830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding