CSPI04G19310 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G19310
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 17002914 .. 17003102 (+)
RNA-Seq Expression	CSPI04G19310
Synteny	CSPI04G19310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAAAAGGGGAACCAAGAGGACGACTGTAGGCGGCGGTGGAAGTGGGGGAAGAAGCAGAGGCAGCAGCACAAGAAGACACACTATCCAGACTAACAAAGTGGCCTTGGAATACCCGAAACCGCCGCCACCGGCCATTATCTCCGGCAATATAGTGGGGGATTGTGGGGGTGGTATGAGTAGGTGA

mRNA sequence

ATGATTAAAAGGGGAACCAAGAGGACGACTGTAGGCGGCGGTGGAAGTGGGGGAAGAAGCAGAGGCAGCAGCACAAGAAGACACACTATCCAGACTAACAAAGTGGCCTTGGAATACCCGAAACCGCCGCCACCGGCCATTATCTCCGGCAATATAGTGGGGGATTGTGGGGGTGGTATGAGTAGGTGA

Coding sequence (CDS)

ATGATTAAAAGGGGAACCAAGAGGACGACTGTAGGCGGCGGTGGAAGTGGGGGAAGAAGCAGAGGCAGCAGCACAAGAAGACACACTATCCAGACTAACAAAGTGGCCTTGGAATACCCGAAACCGCCGCCACCGGCCATTATCTCCGGCAATATAGTGGGGGATTGTGGGGGTGGTATGAGTAGGTGA

Protein sequence

MIKRGTKRTTVGGGGSGGRSRGSSTRRHTIQTNKVALEYPKPPPPAIISGNIVGDCGGGMSR*

Homology

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BLAST of CSPI04G19310 vs. NCBI nr
Match: KAG6603315.1 (hypothetical protein SDJN03_03924, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 0


Query: 3  KRGTKRTTVGGGGSGGRSRGSSTRRHTIQTNKVALEYPKPPPPAII-SGNIV 54
          K GTK TTVGGGGSGGRSRG STRR T+QTNK  LE+ K   PAII SGN+V
Sbjct: 19 KMGTKSTTVGGGGSGGRSRG-STRRQTVQTNKATLEHQKKQQPAIILSGNLV 69

The following BLAST results are available for this feature:

BLAST of CSPI04G19310 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G19310 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G19310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6603315.1	1.9e-07	73.08	hypothetical protein SDJN03_03924, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI04G19310 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G19310.1	CSPI04G19310.1	mRNA