CSPI04G19120 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G19120
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr4: 16747645 .. 16748037 (-)
RNA-Seq ExpressionCSPI04G19120
SyntenyCSPI04G19120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTATTCAATGATCCTTATGTATCTGTCTGATGAAGTTCTTAAGCCTGTAGATGAGGCTACTACTATAGGAGAGTTGTGGAAGAAGCTAGAAAGTCTTTACTTGACAAAGTCATAGCCAAATAAATTATATCTAAAGGAGAAATTTTTTGGATATAAGATGAAACCAAGTAAAGGCTTAAAAGAGAACTTGAATGAATTTCAGAAGATTATAGTTGATCTTAATAACATCAGTGAGAAGATGTCAGATGAGAATCAAGCCTTGATTCTTTTAAATTCATTACCTCAAACATATCGAGAGGTTAAGGCAACTATTAAATATAGTCGGAATTCATTGACCATGAGTGTAGCGTTGGATGCCTTAAAGACTAGAAAACTTGAAATTAAAAAA

mRNA sequence

ATGGCCTATTCAATGATCCTTATGTATCTGTCTGATGAAGTTCTTAAGCCTGTAGATGAGGCTACTACTATAGGAGAGTTGTGGAAGAAGCTAGAAAGTCTTTACTTGACAAATGAGAAGATGTCAGATGAGAATCAAGCCTTGATTCTTTTAAATTCATTACCTCAAACATATCGAGAGGTTAAGGCAACTATTAAATATAGTCGGAATTCATTGACCATGAGTGTAGCGTTGGATGCCTTAAAGACTAGAAAACTTGAAATTAAAAAA

Coding sequence (CDS)

ATGGCCTATTCAATGATCCTTATGTATCTGTCTGATGAAGTTCTTAAGCCTGTAGATGAGGCTACTACTATAGGAGAGTTGTGGAAGAAGCTAGAAAGTCTTTACTTGACAAATGAGAAGATGTCAGATGAGAATCAAGCCTTGATTCTTTTAAATTCATTACCTCAAACATATCGAGAGGTTAAGGCAACTATTAAATATAGTCGGAATTCATTGACCATGAGTGTAGCGTTGGATGCCTTAAAGACTAGAAAACTTGAAATTAAAAAA

Protein sequence

MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLTNEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALDALKTRKLEIKK
Homology
[Close]
BLAST of CSPI04G19120 vs. ExPASy TrEMBL
Match: A0A5A7VKC2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00310 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.3e-26
Identity = 75/127 (59.06%), Postives = 81/127 (63.78%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           M YS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                       
Sbjct: 57  MTYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKFLPNKEKFFRYKMDQSKSLEEN 116

Query: 61  --------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALDALKT 91
                          EKMSDENQA+ILLNSLP+TYREVKA IKY R+SLTMS+ LDALKT
Sbjct: 117 LDEFQKIIVDLSNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKT 176

[Close]
BLAST of CSPI04G19120 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.3e-26
Identity = 76/131 (58.02%), Postives = 82/131 (62.60%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           MAYS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                       
Sbjct: 57  MAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKS 116

Query: 61  ------------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALD 91
                              EKMSDENQA+ILLNSLP+TYREVKA IKY R+SLTMS+ LD
Sbjct: 117 LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLD 176

[Close]
BLAST of CSPI04G19120 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.3e-26
Identity = 76/131 (58.02%), Postives = 82/131 (62.60%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           MAYS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                       
Sbjct: 57  MAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKS 116

Query: 61  ------------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALD 91
                              EKMSDENQA+ILLNSLP+TYREVKA IKY R+SLTMS+ LD
Sbjct: 117 LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLD 176

[Close]
BLAST of CSPI04G19120 vs. ExPASy TrEMBL
Match: A0A5A7V025 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold542G00530 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 75/131 (57.25%), Postives = 83/131 (63.36%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           MAYS IL+YLSDEVL+ VDEATT GELWKKLE+LYLT                       
Sbjct: 57  MAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKLYLKEKFFGYKMDQSKG 116

Query: 61  ------------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALD 91
                             +EKMSDENQ +ILLNSLP+TYREVKATIKY R+SLTMS+ LD
Sbjct: 117 LEENLDKFQKIIVDLNNISEKMSDENQVVILLNSLPETYREVKATIKYGRDSLTMSIVLD 176

[Close]
BLAST of CSPI04G19120 vs. ExPASy TrEMBL
Match: A0A5D3C1A2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001930 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.1e-25
Identity = 74/131 (56.49%), Postives = 82/131 (62.60%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           MAYS IL+YLSDEVL+ VDEATTIGELWKKLESLYLT                       
Sbjct: 57  MAYSTILLYLSDEVLRLVDEATTIGELWKKLESLYLTKFLPNKLYLKKKFFGYKMEKSKG 116

Query: 61  ------------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALD 91
                              EKMSDENQ +ILLNSLP+TYREVKA IKY ++SLTM++ LD
Sbjct: 117 LEENLDEFQKIIVGLNNIGEKMSDENQVVILLNSLPETYREVKAAIKYGQDSLTMNIVLD 176

[Close]
BLAST of CSPI04G19120 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 76/131 (58.02%), Postives = 82/131 (62.60%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           MAYS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                       
Sbjct: 57  MAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKS 116

Query: 61  ------------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALD 91
                              EKMSDENQA+ILLNSLP+TYREVKA IKY R+SLTMS+ LD
Sbjct: 117 LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLD 176

[Close]
BLAST of CSPI04G19120 vs. NCBI nr
Match: KAA0067607.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ97155.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 75/127 (59.06%), Postives = 81/127 (63.78%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           M YS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                       
Sbjct: 57  MTYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKFLPNKEKFFRYKMDQSKSLEEN 116

Query: 61  --------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALDALKT 91
                          EKMSDENQA+ILLNSLP+TYREVKA IKY R+SLTMS+ LDALKT
Sbjct: 117 LDEFQKIIVDLSNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKT 176

[Close]
BLAST of CSPI04G19120 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 125.9 bits (315), Expect = 1.7e-25
Identity = 76/131 (58.02%), Postives = 82/131 (62.60%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           MAYS IL+YLSDEVL+ VDEATT GELWKKLESLYLT                       
Sbjct: 57  MAYSTILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKS 116

Query: 61  ------------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALD 91
                              EKMSDENQA+ILLNSLP+TYREVKA IKY R+SLTMS+ LD
Sbjct: 117 LEENLDEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLD 176

[Close]
BLAST of CSPI04G19120 vs. NCBI nr
Match: KAA0060177.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 2.2e-25
Identity = 75/131 (57.25%), Postives = 83/131 (63.36%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           MAYS IL+YLSDEVL+ VDEATT GELWKKLE+LYLT                       
Sbjct: 57  MAYSTILLYLSDEVLRLVDEATTTGELWKKLENLYLTKSLPNKLYLKEKFFGYKMDQSKG 116

Query: 61  ------------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALD 91
                             +EKMSDENQ +ILLNSLP+TYREVKATIKY R+SLTMS+ LD
Sbjct: 117 LEENLDKFQKIIVDLNNISEKMSDENQVVILLNSLPETYREVKATIKYGRDSLTMSIVLD 176

[Close]
BLAST of CSPI04G19120 vs. NCBI nr
Match: TYK05711.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 8.5e-25
Identity = 74/131 (56.49%), Postives = 82/131 (62.60%), Query Frame = 0 

Query: 1   MAYSMILMYLSDEVLKPVDEATTIGELWKKLESLYLT----------------------- 60
           MAYS IL+YLSDEVL+ VDEATTIGELWKKLESLYLT                       
Sbjct: 57  MAYSTILLYLSDEVLRLVDEATTIGELWKKLESLYLTKFLPNKLYLKKKFFGYKMEKSKG 116

Query: 61  ------------------NEKMSDENQALILLNSLPQTYREVKATIKYSRNSLTMSVALD 91
                              EKMSDENQ +ILLNSLP+TYREVKA IKY ++SLTM++ LD
Sbjct: 117 LEENLDEFQKIIVGLNNIGEKMSDENQVVILLNSLPETYREVKAAIKYGQDSLTMNIVLD 176

The following BLAST results are available for this feature:
BLAST of CSPI04G19120 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G19120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKC28.3e-2659.06Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... [more]
A0A5D3DNU18.3e-2658.02Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A5A7UB258.3e-2658.02Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5A7V0251.1e-2557.25Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3C1A24.1e-2556.49Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
BLAST of CSPI04G19120 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK25306.11.7e-2558.02putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0067607.11.7e-2559.06retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]... [more]
KAA0050719.11.7e-2558.02putative gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0060177.12.2e-2557.25Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYK05711.18.5e-2556.49Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
BLAST of CSPI04G19120 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G19120.1CSPI04G19120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding