CSPI04G18440 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G18440
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	vascular plant one zinc finger protein
Location	Chr4: 15925385 .. 15926489 (-)
RNA-Seq Expression	CSPI04G18440
Synteny	CSPI04G18440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTTAAAGGGATATTCACTAATCTTCAAAATGCAAGGAAGGAGAGTCGTACTACTGACATTACTATCTTGGAGGAGCGAGTCCATCATATGCTCAGGGAGTGGAATGTTGAGCTTAATGAACCTTCACCTGCATCTTCGTTTGTCGTAAGTTTTTTTTTTCAACTTTCTTTCCCCTTTGCCAAGGATGGTTTTGTCTTCCATCACTTTTGTGTAATCTAAATGTCTGTAAACATTCAATCAGTAGTGTAGTCTTGGATCATTCTCACAAGAGTTAGCCCATCTTCTTGGGCATTGTGATGAGCAAGATGATGCAACTAGTACATTTGTTGAACCAAAGGCTAAACCTGAACTCTGTTGCATGCGTTCTTGGTAGCAATCCGTTAAATTTTGTACAAGTAGGCTTTTTCTTCATTTTCTTTTTTAGTCTAACTCCATCTTTCAACGGGTGAATAATGTGTTCACTAGCCTTCTTTATTCACAAATTCTCTACATATAATCAGTCTAATCCAGCTTCTAAGGTAAAGGATAAATGGAAAAGTATTGCCAATTAAAAACAATGCACAAAGCTTCTTAACCATTTAACAAAGTTCTATTAATTGCACTTGAGAAATAATCTTGTAGTGTTTTCTATTTTATGTCATTTGCTGGAAACTGGCTGGTTTCTCTTGGGATCCATGTCTACAAGCCCAACTTCTTAAAACATGTGACTTTTTCTATTGGATTAGTTGTTGTTTGCCTCTTGTTTGTGATGACAGTATCTGCATAATAGTTGTGAGAATTGAGGCTTATCAATTAATCCAGACTGATTTTTTTATTTTTTTTGTCATTATGGTATATGTGCTTCTATTGTTGTTGTTTGTGATTTTCTGATATTACATTTCTTGATGAGGAGACAATCAGGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAAGCATCAATTGGTGTTTTAGCCATCTGCATTATTTCCATATCA

mRNA sequence

ATGACCTTAAAGGGATATTCACTAATCTTCAAAATGCAAGGAAGGAGAGTCGTACTACTGACATTACTATCTTGGAGGAGCGAGTCCATCATATGCTCAGGGAGTGGAATGTTGAGCTTAATGAACCTTCACCTGCATCTTCGTTTGTCACAATCAGGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAAGCATCAATTGGTGTTTTAGCCATCTGCATTATTTCCATATCA

Coding sequence (CDS)

ATGACCTTAAAGGGATATTCACTAATCTTCAAAATGCAAGGAAGGAGAGTCGTACTACTGACATTACTATCTTGGAGGAGCGAGTCCATCATATGCTCAGGGAGTGGAATGTTGAGCTTAATGAACCTTCACCTGCATCTTCGTTTGTCACAATCAGGGAAGAACTCTACTTCGACAAGCCTAGATGGGCCTTTTAAGAGTGACAATCGAAAGCAAAGGTCATTACCCGATTATAATGGCCGTGGTTGGCATGAATCAAGGAAGCTAGTGATGGAGTTTGGTGGTCAGAAGAAGTCTTATTACATGGATCCACAAGCATCAATTGGTGTTTTAGCCATCTGCATTATTTCCATATCA

Protein sequence

MTLKGYSLIFKMQGRRVVLLTLLSWRSESIICSGSGMLSLMNLHLHLRLSQSGKNSTSTSLDGPFKSDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYYMDPQASIGVLAICIISIS

Homology

[Close]

BLAST of CSPI04G18440 vs. ExPASy Swiss-Prot
Match: Q9SGQ0 (Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-13
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQ 106
           F+S NRKQRSLPDYNGRGWHESRK +M EFGG K+SYYMDPQ
Sbjct: 325 FESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKRSYYMDPQ 366

[Close]

BLAST of CSPI04G18440 vs. ExPASy Swiss-Prot
Match: Q9SLB9 (Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 9.6e-11
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRK-LVMEFGGQKKSYYMDPQ 106
           + S NRKQRSLPDY+GRGWHESRK L+ E  GQK+SYYMDPQ
Sbjct: 338 YDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQ 379

[Close]

BLAST of CSPI04G18440 vs. ExPASy TrEMBL
Match: A0A0A0L207 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G410800 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.6e-19
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 67  SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKSYYMDPQASIGVLAICIISIS 120
           SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKS YMDPQASIGVLAICIISIS
Sbjct: 2   SDNRKQRSLPDYNGRGWHESRKLVMEFGGQKKS-YMDPQASIGVLAICIISIS 53

[Close]

BLAST of CSPI04G18440 vs. ExPASy TrEMBL
Match: A0A5D3CDY9 (Transcription factor VOZ1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00330 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSYYMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]

BLAST of CSPI04G18440 vs. ExPASy TrEMBL
Match: A0A5A7VI89 (Transcription factor VOZ1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001130 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSYYMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]

BLAST of CSPI04G18440 vs. ExPASy TrEMBL
Match: A0A0A0LT50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G415530 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSYYMDPQ S
Sbjct: 323 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 366

[Close]

BLAST of CSPI04G18440 vs. ExPASy TrEMBL
Match: A0A1S3C2S3 (transcription factor VOZ1-like OS=Cucumis melo OX=3656 GN=LOC103496002 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.8e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSYYMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]

BLAST of CSPI04G18440 vs. NCBI nr
Match: XP_008455940.1 (PREDICTED: transcription factor VOZ1-like [Cucumis melo] >TYK09550.1 transcription factor VOZ1-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSYYMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]

BLAST of CSPI04G18440 vs. NCBI nr
Match: KAA0067448.1 (transcription factor VOZ1-like [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSYYMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]

BLAST of CSPI04G18440 vs. NCBI nr
Match: XP_011649982.2 (transcription factor VOZ1 [Cucumis sativus] >XP_011649983.2 transcription factor VOZ1 [Cucumis sativus] >XP_031736625.1 transcription factor VOZ1 [Cucumis sativus] >XP_031736626.1 transcription factor VOZ1 [Cucumis sativus] >KAE8652275.1 hypothetical protein Csa_021797 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 3.7e-12
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDY+GRGWHESRKLVM EFGGQKKSYYMDPQ S
Sbjct: 347 FESGNRKQRSLPDYSGRGWHESRKLVMKEFGGQKKSYYMDPQPS 390

[Close]

BLAST of CSPI04G18440 vs. NCBI nr
Match: KAG6570910.1 (Transcription factor VOZ1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-12
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDYNGRGWHESRK VM EFGGQKKSYYMDPQ S
Sbjct: 347 FESGNRKQRSLPDYNGRGWHESRKQVMKEFGGQKKSYYMDPQPS 390

[Close]

BLAST of CSPI04G18440 vs. NCBI nr
Match: XP_022140419.1 (transcription factor VOZ1-like [Momordica charantia])

HSP 1 Score: 81.6 bits (200), Expect = 4.9e-12
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQAS 108
           F+S NRKQRSLPDY GRGWHESRKLVM EFGGQKKSYYMDPQ S
Sbjct: 343 FESGNRKQRSLPDYKGRGWHESRKLVMKEFGGQKKSYYMDPQPS 386

[Close]

BLAST of CSPI04G18440 vs. TAIR 10
Match: AT1G28520.1 (vascular plant one zinc finger protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQ 106
           F+S NRKQRSLPDYNGRGWHESRK +M EFGG K+SYYMDPQ
Sbjct: 325 FESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKRSYYMDPQ 366

[Close]

BLAST of CSPI04G18440 vs. TAIR 10
Match: AT1G28520.2 (vascular plant one zinc finger protein )

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-14
Identity = 35/42 (83.33%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRKLVM-EFGGQKKSYYMDPQ 106
           F+S NRKQRSLPDYNGRGWHESRK +M EFGG K+SYYMDPQ
Sbjct: 325 FESGNRKQRSLPDYNGRGWHESRKQIMVEFGGLKRSYYMDPQ 366

[Close]

BLAST of CSPI04G18440 vs. TAIR 10
Match: AT2G42400.1 (vascular plant one zinc finger protein 2 )

HSP 1 Score: 67.8 bits (164), Expect = 6.8e-12
Identity = 32/42 (76.19%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 65  FKSDNRKQRSLPDYNGRGWHESRK-LVMEFGGQKKSYYMDPQ 106
           + S NRKQRSLPDY+GRGWHESRK L+ E  GQK+SYYMDPQ
Sbjct: 338 YDSGNRKQRSLPDYSGRGWHESRKQLMKEQEGQKRSYYMDPQ 379

The following BLAST results are available for this feature:

BLAST of CSPI04G18440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SGQ0	2.7e-13	83.33	Transcription factor VOZ1 OS=Arabidopsis thaliana OX=3702 GN=VOZ1 PE=1 SV=1	[more]
Q9SLB9	9.6e-11	76.19	Transcription factor VOZ2 OS=Arabidopsis thaliana OX=3702 GN=VOZ2 PE=1 SV=2	[more]

BLAST of CSPI04G18440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L207	7.6e-19	98.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G410800 PE=4 SV=1	[more]
A0A5D3CDY9	1.8e-12	88.64	Transcription factor VOZ1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7VI89	1.8e-12	88.64	Transcription factor VOZ1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0LT50	1.8e-12	88.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G415530 PE=4 SV=1	[more]
A0A1S3C2S3	1.8e-12	88.64	transcription factor VOZ1-like OS=Cucumis melo OX=3656 GN=LOC103496002 PE=4 SV=1	[more]

BLAST of CSPI04G18440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455940.1	3.7e-12	88.64	PREDICTED: transcription factor VOZ1-like [Cucumis melo] >TYK09550.1 transcripti...	[more]
KAA0067448.1	3.7e-12	88.64	transcription factor VOZ1-like [Cucumis melo var. makuwa]	[more]
XP_011649982.2	3.7e-12	88.64	transcription factor VOZ1 [Cucumis sativus] >XP_011649983.2 transcription factor...	[more]
KAG6570910.1	4.9e-12	88.64	Transcription factor VOZ1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022140419.1	4.9e-12	88.64	transcription factor VOZ1-like [Momordica charantia]	[more]

BLAST of CSPI04G18440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28520.1	1.9e-14	83.33	vascular plant one zinc finger protein	[more]
AT1G28520.2	1.9e-14	83.33	vascular plant one zinc finger protein	[more]
AT2G42400.1	6.8e-12	76.19	vascular plant one zinc finger protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..80
None	No IPR available	PANTHER	PTHR33873:SF1	TRANSCRIPTION FACTOR VOZ1	coord: 65..106
IPR039277	Transcription factor VOZ1/VOZ2	PANTHER	PTHR33873	TRANSCRIPTION FACTOR VOZ1	coord: 65..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G18440.1	CSPI04G18440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048578	positive regulation of long-day photoperiodism, flowering
biological_process	GO:0006355	regulation of transcription, DNA-templated