CSPI04G18400 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G18400
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Chr4: 15830748 .. 15831410 (-)
RNA-Seq Expression	CSPI04G18400
Synteny	CSPI04G18400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGGGGGAAGAAGAACTGAAGACGAAAGCTGAAAATCATGAAGTTGAAATTCAGGTGTGTGTGTGTGTTTTGTTGTTATAAGTTAACAATGATAATTAAGTTGATATAATTAATAGTTATGTAAATTTATAATAATTAGTTTTGAGTTATGGGAATTAATTATCAGGAGAGAGGAGAAATATTCTTCTTGTATAGGCCTAAAGTCGGAAAACAAGAAGTGCATAGCCCTGATGAGGTGCAACGCTTGTACATTATTCTTCGGCCACAGTCCGGTGAGAAGACGGTCGAGGAGAAACAATGTAGCTATGGTGGACAGAGTACCCACACCCAGGTTAATTAATTAATTCTACCAAATACCTACATTTACTTTTGTTTTGACCATTTTATTTAATAAGACATGTCCAACTTATTTTTGTCTAAATTAGAAGTAGTAGATGAGTTAAACATGACCATAAACCCTCATTTTGGCTCTCATACAATATTTGAACACAGGAAGTTAACATCGAAGAGCAACCCCTTTTACGGTTCATTATTATGGGTCGAAAAAGCCTTCCACACCCATCCCACAGGTCTCGACCTTACTGGGGATTTGTAGATATGGTAACAACCAACGTTCAAGATATCAAGACTGCGCTTCAAGGAGGTACATCCCACTGA

mRNA sequence

ATGGGAGAGGGGGAAGAAGAACTGAAGACGAAAGCTGAAAATCATGAAGTTGAAATTCAGGAGAGAGGAGAAATATTCTTCTTGTATAGGCCTAAAGTCGGAAAACAAGAAGTGCATAGCCCTGATGAGGTGCAACGCTTGTACATTATTCTTCGGCCACAGTCCGGTGAGAAGACGGTCGAGGAGAAACAATGTAGCTATGGTGGACAGAGTACCCACACCCAGGAAGTTAACATCGAAGAGCAACCCCTTTTACGGTTCATTATTATGGGTCGAAAAAGCCTTCCACACCCATCCCACAGGTCTCGACCTTACTGGGGATTTGTAGATATGGTAACAACCAACGTTCAAGATATCAAGACTGCGCTTCAAGGAGGTACATCCCACTGA

Coding sequence (CDS)

ATGGGAGAGGGGGAAGAAGAACTGAAGACGAAAGCTGAAAATCATGAAGTTGAAATTCAGGAGAGAGGAGAAATATTCTTCTTGTATAGGCCTAAAGTCGGAAAACAAGAAGTGCATAGCCCTGATGAGGTGCAACGCTTGTACATTATTCTTCGGCCACAGTCCGGTGAGAAGACGGTCGAGGAGAAACAATGTAGCTATGGTGGACAGAGTACCCACACCCAGGAAGTTAACATCGAAGAGCAACCCCTTTTACGGTTCATTATTATGGGTCGAAAAAGCCTTCCACACCCATCCCACAGGTCTCGACCTTACTGGGGATTTGTAGATATGGTAACAACCAACGTTCAAGATATCAAGACTGCGCTTCAAGGAGGTACATCCCACTGA

Protein sequence

MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTVEEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIKTALQGGTSH*

Homology

[Close]

BLAST of CSPI04G18400 vs. ExPASy TrEMBL
Match: A0A0A0KYP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385790 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 9.7e-68
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVH PDEVQRLYIILRPQSGEKTV
Sbjct: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHGPDEVQRLYIILRPQSGEKTV 60

Query: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120
           EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK
Sbjct: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120

Query: 121 TALQGGTSH 130
           TALQGGTSH
Sbjct: 121 TALQGGTSH 129

[Close]

BLAST of CSPI04G18400 vs. ExPASy TrEMBL
Match: A0A5D3BUL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00100 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEGEEELKTKAE+HEVEIQERGEIFFLYRPKV KQEVHSPDEVQRLYIILRP SGEKTV
Sbjct: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60

Query: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120
           EEKQC  GGQSTHTQEVNI++QPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQ+IK
Sbjct: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120

Query: 121 TALQG 126
            ALQG
Sbjct: 121 IALQG 125

[Close]

BLAST of CSPI04G18400 vs. ExPASy TrEMBL
Match: A0A1S3B9M2 (uncharacterized protein LOC103487535 OS=Cucumis melo OX=3656 GN=LOC103487535 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEGEEELKTKAE+HEVEIQERGEIFFLYRPKV KQEVHSPDEVQRLYIILRP SGEKTV
Sbjct: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60

Query: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120
           EEKQC  GGQSTHTQEVNI++QPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQ+IK
Sbjct: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120

Query: 121 TALQG 126
            ALQG
Sbjct: 121 IALQG 125

[Close]

BLAST of CSPI04G18400 vs. ExPASy TrEMBL
Match: A0A6J1GXU8 (uncharacterized protein LOC111457833 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457833 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 2.2e-43
Identity = 95/126 (75.40%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEGEE  KT+AE   VEIQERGEIFF YRPKVGKQ+VH PD+VQRLYIILRP+SGE+ V
Sbjct: 1   MGEGEES-KTRAE-AGVEIQERGEIFFFYRPKVGKQQVHGPDDVQRLYIILRPESGERAV 60

Query: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120
           EEKQ      S  TQEVNIE+QPLLRF+IMGRKSLP+P+ + RPYWGFVDMVTTNVQD+K
Sbjct: 61  EEKQLP-NASSRRTQEVNIEKQPLLRFMIMGRKSLPNPAQKRRPYWGFVDMVTTNVQDVK 120

Query: 121 TALQGG 127
            ALQ G
Sbjct: 121 AALQEG 123

[Close]

BLAST of CSPI04G18400 vs. ExPASy TrEMBL
Match: A0A200R9B0 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_521g97 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.5e-41
Identity = 92/144 (63.89%), Postives = 108/144 (75.00%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MG+G EE KT+ E + VEIQERGEIFF YRPKV K+E HSPD+VQRLYI+LRP+SGE  V
Sbjct: 1   MGQG-EEFKTRDEPN-VEIQERGEIFFFYRPKVNKEEAHSPDDVQRLYIVLRPESGENPV 60

Query: 61  EEKQCSYGGQ-----------------STHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSR 120
           EEKQ S  G+                 +   +EVNIE++PLLRFI+MGRKSLP PS RSR
Sbjct: 61  EEKQSSDSGKEGANKKRGGGTGKNIKANVDVEEVNIEKEPLLRFIVMGRKSLPDPSKRSR 120

Query: 121 PYWGFVDMVTTNVQDIKTALQGGT 128
           PYWGFV+MVTTN+ DIKTAL+GGT
Sbjct: 121 PYWGFVEMVTTNIDDIKTALKGGT 142

[Close]

BLAST of CSPI04G18400 vs. NCBI nr
Match: XP_031740485.1 (uncharacterized protein LOC101213393 [Cucumis sativus] >KAE8649641.1 hypothetical protein Csa_012091 [Cucumis sativus])

HSP 1 Score: 256.9 bits (655), Expect = 9.3e-65
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVH PDEVQRLYIILRPQSGEKTV
Sbjct: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHGPDEVQRLYIILRPQSGEKTV 60

Query: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120
           EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK
Sbjct: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120

Query: 121 TALQG 126
           TALQG
Sbjct: 121 TALQG 125

[Close]

BLAST of CSPI04G18400 vs. NCBI nr
Match: XP_008444096.1 (PREDICTED: uncharacterized protein LOC103487535 [Cucumis melo] >KAA0064208.1 uncharacterized protein E6C27_scaffold548G001530 [Cucumis melo var. makuwa] >TYK02820.1 uncharacterized protein E5676_scaffold218G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 238.4 bits (607), Expect = 3.4e-59
Identity = 116/125 (92.80%), Postives = 120/125 (96.00%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEGEEELKTKAE+HEVEIQERGEIFFLYRPKV KQEVHSPDEVQRLYIILRP SGEKTV
Sbjct: 1   MGEGEEELKTKAEDHEVEIQERGEIFFLYRPKVEKQEVHSPDEVQRLYIILRPLSGEKTV 60

Query: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120
           EEKQC  GGQSTHTQEVNI++QPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQ+IK
Sbjct: 61  EEKQCKDGGQSTHTQEVNIKKQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQEIK 120

Query: 121 TALQG 126
            ALQG
Sbjct: 121 IALQG 125

[Close]

BLAST of CSPI04G18400 vs. NCBI nr
Match: XP_038895444.1 (uncharacterized protein LOC120083676 [Benincasa hispida])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 104/133 (78.20%), Postives = 113/133 (84.96%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEG+E  KTKAE+  VEIQERGEI+F YRPKV KQEVHSPDEVQRLYIILRP+SGEK V
Sbjct: 1   MGEGQES-KTKAED-GVEIQERGEIYFFYRPKVEKQEVHSPDEVQRLYIILRPESGEKAV 60

Query: 61  EEKQCSYG-------GQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVT 120
           EEKQ +         GQ THTQEVNIE+QPLLRFIIMGRKSLPHP+ R+RPYWGFVDMVT
Sbjct: 61  EEKQSTSSSSTGTQRGQGTHTQEVNIEKQPLLRFIIMGRKSLPHPAQRARPYWGFVDMVT 120

Query: 121 TNVQDIKTALQGG 127
           T+VQDIK ALQGG
Sbjct: 121 TDVQDIKNALQGG 131

[Close]

BLAST of CSPI04G18400 vs. NCBI nr
Match: XP_022956009.1 (uncharacterized protein LOC111457833 isoform X1 [Cucurbita moschata])

HSP 1 Score: 184.9 bits (468), Expect = 4.5e-43
Identity = 95/126 (75.40%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEGEE  KT+AE   VEIQERGEIFF YRPKVGKQ+VH PD+VQRLYIILRP+SGE+ V
Sbjct: 1   MGEGEES-KTRAE-AGVEIQERGEIFFFYRPKVGKQQVHGPDDVQRLYIILRPESGERAV 60

Query: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120
           EEKQ      S  TQEVNIE+QPLLRF+IMGRKSLP+P+ + RPYWGFVDMVTTNVQD+K
Sbjct: 61  EEKQLP-NASSRRTQEVNIEKQPLLRFMIMGRKSLPNPAQKRRPYWGFVDMVTTNVQDVK 120

Query: 121 TALQGG 127
            ALQ G
Sbjct: 121 AALQEG 123

[Close]

BLAST of CSPI04G18400 vs. NCBI nr
Match: KAG6581755.1 (hypothetical protein SDJN03_21757, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-42
Identity = 94/126 (74.60%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MGEGE+  KT+AE   VEIQERGEIFF YRPKVGKQ+VH PD+VQRLYIILRP+SGE+ V
Sbjct: 1   MGEGEDS-KTRAE-AGVEIQERGEIFFFYRPKVGKQQVHGPDDVQRLYIILRPESGERAV 60

Query: 61  EEKQCSYGGQSTHTQEVNIEEQPLLRFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIK 120
           EEKQ      S  TQEVNIE+QPLLRF+IMGRKSLP+P+ + RPYWGFVDMVTTNVQD+K
Sbjct: 61  EEKQLP-NASSRRTQEVNIEKQPLLRFMIMGRKSLPNPAQKRRPYWGFVDMVTTNVQDVK 120

Query: 121 TALQGG 127
            ALQ G
Sbjct: 121 AALQEG 123

[Close]

BLAST of CSPI04G18400 vs. TAIR 10
Match: AT1G16770.1 (unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 71; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 3.3e-36
Identity = 79/150 (52.67%), Postives = 103/150 (68.67%), Query Frame = 0


Query: 1   MGEGEEELKTKAENHEVEIQERGEIFFLYRPKVGKQEVHSPDEVQRLYIILRPQSGEKTV 60
           MG+G +E+KT+ +  +VEIQERGEIFF YRPKV K+E HS D+VQRLYI++RP+SGE   
Sbjct: 1   MGQG-KEVKTRPD-PQVEIQERGEIFFFYRPKVNKEEAHSVDDVQRLYIVMRPESGENPT 60

Query: 61  EEKQ------------------------CSYGGQSTH-TQEVNIEEQPLLRFIIMGRKSL 120
           EEKQ                            G+  H  ++VNIE+Q LLRFI+MG+KSL
Sbjct: 61  EEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGHGVEKVNIEKQLLLRFIVMGKKSL 120

Query: 121 PHPSHRSRPYWGFVDMVTTNVQDIKTALQG 126
           P PS +S+P+WGFV+MVTTNV+D+K AL+G
Sbjct: 121 PDPSKKSQPFWGFVEMVTTNVEDVKNALKG 148

[Close]

BLAST of CSPI04G18400 vs. TAIR 10
Match: AT1G16770.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 103 Blast hits to 103 proteins in 50 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 65; Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 88.6 bits (218), Expect = 4.1e-18
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 0


Query: 51  LRPQSGEKTVEEKQ------------------------CSYGGQSTH-TQEVNIEEQPLL 110
           +RP+SGE   EEKQ                            G+  H  ++VNIE+Q LL
Sbjct: 1   MRPESGENPTEEKQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGHGVEKVNIEKQLLL 60

Query: 111 RFIIMGRKSLPHPSHRSRPYWGFVDMVTTNVQDIKTALQG 126
           RFI+MG+KSLP PS +S+P+WGFV+MVTTNV+D+K AL+G
Sbjct: 61  RFIVMGKKSLPDPSKKSQPFWGFVEMVTTNVEDVKNALKG 100

The following BLAST results are available for this feature:

BLAST of CSPI04G18400 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G18400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYP1	9.7e-68	99.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385790 PE=4 SV=1	[more]
A0A5D3BUL8	1.7e-59	92.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B9M2	1.7e-59	92.80	uncharacterized protein LOC103487535 OS=Cucumis melo OX=3656 GN=LOC103487535 PE=...	[more]
A0A6J1GXU8	2.2e-43	75.40	uncharacterized protein LOC111457833 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A200R9B0	3.5e-41	63.89	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_521g97 PE=4 SV=1	[more]

BLAST of CSPI04G18400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031740485.1	9.3e-65	99.20	uncharacterized protein LOC101213393 [Cucumis sativus] >KAE8649641.1 hypothetica...	[more]
XP_008444096.1	3.4e-59	92.80	PREDICTED: uncharacterized protein LOC103487535 [Cucumis melo] >KAA0064208.1 unc...	[more]
XP_038895444.1	1.3e-47	78.20	uncharacterized protein LOC120083676 [Benincasa hispida]	[more]
XP_022956009.1	4.5e-43	75.40	uncharacterized protein LOC111457833 isoform X1 [Cucurbita moschata]	[more]
KAG6581755.1	1.0e-42	74.60	hypothetical protein SDJN03_21757, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI04G18400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16770.1	3.3e-36	52.67	unknown protein; Has 109 Blast hits to 109 proteins in 52 species: Archae - 0; B...	[more]
AT1G16770.2	4.1e-18	46.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34776	F17F16.3 PROTEIN	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G18400.1	CSPI04G18400.1	mRNA