
CSPI04G16670 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTGTTATGCATTATTACTTGAAATATACTAACAAATGGAGCAAATAGGCTATGAAATTAAACATCATTTATCTTTTGGATTTTAGGTCATAAGATTTGAGATTAAACATTTATTCCCGTTTTAATTCTGATGCAACTTCTTACAATATTGTTTCCTTCATTGCCTCCAACCCTTGCACCCTCACTACAAGTTTTCCGGATCTCCGGCCGTCGCTACTTCTGCCCCCATCCCCCAGTCACTTCCGAGACCAACGCCGGTGAGCGTTTTGTGACGTTTCGGTCACTTTTCTTCTTGTTTATTCTAGAAAAAGTTTGAGGGCTTTAGCGTGCTTTCCAGCAGTGCTTATGGACATTTGGCGACTTTTCTGGTGAGATTTAAGTTCCGATCACTTTTAAATCCGTCGTGCCTATGGTGGATTGAGCCCTAACTTCTGAATTTTTGCTGTGTTGAATGTATATGTGTAATCGAATAAGAAGAATCCTAAAACAAAATGATTCTAAACACGCTGAATTTTAATGAATTTGACAGATTGTGTTTGGATTTAAAGGGTTAATTTTAGTTTGTGTTGTGATGGGCAGTTCTCGTGACTCAAATCTCTGAAAACCTTACTGTTACCAAATGAAACTTCGGAATTAAGAAAGACGAGGTCATTGTGTTGTTCAATAAACTGTTACCAAATGAAACTTCGGAATTAAGAATCACATCACATTAATATCTAGCAATCTTAGTAGTTTTGGGTTGTTATTTCTCCGTGTTTTACTTTTACATATTTCACTACCATGTTCGTTCCCTGAATGAGGAGTCTCGATATTGTTAAATGTAATTTGCAATTTCCAATCTCAACATGACTTCTTTGAATATGTAAAGGTTATGTAATTTTATTGGGAGAACTATTTCCTAGGTCGTTTATTGGGATTCTCTAGAGACTCCTGTTGACACCTATAAATAGAGGTGTTCTCTCCCTTGTAACCAAGCAATTAAGAAGCTAAGAAAGCTCCAATTGAGCCTATGTGTCAAAGCACTGCATAGAAGAAGTTTCTCCATAATTTTCCATCTATTCTAAACTCTTGCCTAATTCTCCTTCATTGCCTCCAATAGATATTTGATTCGGAGGTTTGTGATGGAGGCTACGAATTGGGAAAGCTCTTCAGGAGGAGCTAGTGATACTGGTGATGAAGACAATTACGAACAAGACATAAACGACGAAGAAGAATGTCTCAGTGCATCTGGGTGCTTGCGCAAGCTGCAATTCAGGTTGAGAATTTCAAGAAGTTTAACTCCTCTGAATCCCTCAATAGGATAATGCTATTTGATTATTATCAAGTGTGTTACAATATTTTATCTATTTCTAGGAAGCATGCTTCAACTGCTCGATGGAATGACCAAATGGGAATGGCAGAAGTTTTAGAGAATAAGGGCAGCCTTTGGACGACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAACTATGAGTTTATTATGGTTTTGTTATCCTGATTGTTTTTTGATATTTACCACAACATTTTTTGGGGAGTTCTTCTCTTTCGCATTGTCTTGATTTGACTTCTTTTAAGTAATAGGGTAATGTCATTGAAAACAAAAGAAATTGGAAACGTTTCCAAGCCAAGGCCAGAAATTGGCCTATGAGGTGAGGAGAGCTGCATTAGGTGCATCTTGCAATTACCATGGTCGCCTCTTGGTCAGTTTTTGTAATTGCGTTTTGGTTGCCCTTGGGCCTGTATTTAGACCATTACATTATGAATAAAGTGAAGAAATTCTAACCAAAATTATACAAGAGGTAGCAGTTGTTGCCTTTCATGTCTTAGTAAAGACGAGAAATTACCATTTTGAAGTATTTTCTTTTGCTAAAATAAAGAAGTTTTTTCCTATCATTATCTCTTGAAAATAAGTAGCATCAATGAAATTTATTCAGCATGTTTGTGTCAAGTAATATATCGTTTTATGTATTTCTTTTCTACTTACAATATATATTCATCTTCTAGTCTATTTACAATATCTATGTGCATTGTTTTACATTCACTTGGGCGACGTTTCATAATAATTTTTTTTTTAATTGTCTCTTAATAATTTCTTTTCTATATTTTCAGATTTCTTATTGAAGTCGGGGCCTTACATCTGCTGGATCATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAGGTAGCTGAGGGAAGAAGTGGCCGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTACATTGTTGGAAAGCATAGAGTTCCTTGGTCTCTAAAGAATGTTAGGAATGACTGTGACATTTCATCTCCAAGTTCTACTGAAAATAAAGGAGCATCAGATGTCAAATCAGAAGATGAGCAGTCGATTTGCAGGCTATTAAATGCTATTCAGCTCGATGAAGTGACACCCATTTTTGATGTTTTTCTTCCTCATAACAAGTTTAGAAAATCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGTAAACATTTTCCTCTATATGATAGTCTGCAGTATGAGTTTTGTGTTCAATTTCTTTGTCAACTACACTTAGTTAAATGCTTAAGTGACACACATATGATGTAGGCAGTTTTGGAAGAAAATTAGTTAAATGGTTCCTGTATAAACACTATATATTTTTTACTAGTTTCTAGAATTTCTCAAACTACTCATTATTAAACCTTTTTAAAAATGCATTTAGTCAACTTTTACTACTCAACCATTTGATTTAACCAAGTCCTACCCATCTCTATCTCTAAATAATCAGACATGCAAACATGCCAAAACGAGCTATAGTGCTTATATTGTCAACTTTGAAATTAGAGGCTCGATTCTCCCTCTTCACATATTGTTGAAAACAAAAAAGTCAATGGTTCTGAAATTGTTTAGGCATTGTATCGATTTTCTTTTTTAGCCTTTTGTGACTATTTAGTTGCATTCATGTAATAATACTAATATCTAATAATAGGTATCGACTCGTGTTGTGCCTTTCATCTGGGAAGTTCTATGCATTACTTAGAATTGATTTGACATTCATGTGATATAATTTTATTTCTGTTATAGGGGATATCCACCATCAAAAGAAGAGATTGAAGTTCTTGAGAGAACATCAAGAGGCATTCCAATGAAATATTGTCACGTTGAACATGGAAGAGTCTGCTTCTTTTCATTTGATAAGGTGGAGCTCCCTCTCTTACCTTGACATTGTTGTGGATTACTCTGCTATTTATTATTATTATTATCATTATTTCGATTAGTAATTGGTATGTTATTTGAATTTTATTTTATGTTTAGTCATGAGCACAGGGATTCCTCTTCCTTATTTCTTGTGTTCAGCTGCTATAGCTTGTTTCTTGAAATTGATTATATGAACTACTTTGGATAGGGCTGGTTCTTTACTGTTGAACCAGCTCATTCAAAATTTTCATTTCCTGCTAGAAATTAGTGTTCATCCATATTCTTCCTCACATGTTCAAACCCAAATCATTGAATATAAAATTGG CTTGTTATGCATTATTACTTGAAATATACTAACAAATGGAGCAAATAGGCTATGAAATTAAACATCATTTATCTTTTGGATTTTAGGTCATAAGATTTGAGATTAAACATTTATTCCCGTTTTAATTCTGATGCAACTTCTTACAATATTGTTTCCTTCATTGCCTCCAACCCTTGCACCCTCACTACAAGTTTTCCGGATCTCCGGCCGTCGCTACTTCTGCCCCCATCCCCCAGTCACTTCCGAGACCAACGCCGGTGAGCGTTTTGTGACGTTTCGGTCACTTTTCTTCTTGTTTATTCTAGAAAAAGTTTGAGGGCTTTAGCGTGCTTTCCAGCAGTGCTTATGGACATTTGGCGACTTTTCTGATATTTGATTCGGAGGTTTGTGATGGAGGCTACGAATTGGGAAAGCTCTTCAGGAGGAGCTAGTGATACTGGTGATGAAGACAATTACGAACAAGACATAAACGACGAAGAAGAATGTCTCAGTGCATCTGGGTGCTTGCGCAAGCTGCAATTCAGGAAGCATGCTTCAACTGCTCGATGGAATGACCAAATGGGAATGGCAGAAGTTTTAGAGAATAAGGGCAGCCTTTGGACGACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTCGGGGCCTTACATCTGCTGGATCATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAGGTAGCTGAGGGAAGAAGTGGCCGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTACATTGTTGGAAAGCATAGAGTTCCTTGGTCTCTAAAGAATGTTAGGAATGACTGTGACATTTCATCTCCAAGTTCTACTGAAAATAAAGGAGCATCAGATGTCAAATCAGAAGATGAGCAGTCGATTTGCAGGCTATTAAATGCTATTCAGCTCGATGAAGTGACACCCATTTTTGATGTTTTTCTTCCTCATAACAAGTTTAGAAAATCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCATCAAAAGAAGAGATTGAAGTTCTTGAGAGAACATCAAGAGGCATTCCAATGAAATATTGTCACGTTGAACATGGAAGAGTCTGCTTCTTTTCATTTGATAAGGTGGAGCTCCCTCTCTTACCTTGACATTGTTGTGGATTACTCTGCTATTTATTATTATTATTATCATTATTTCGATTAGTAATTGGTATGTTATTTGAATTTTATTTTATGTTTAGTCATGAGCACAGGGATTCCTCTTCCTTATTTCTTGTGTTCAGCTGCTATAGCTTGTTTCTTGAAATTGATTATATGAACTACTTTGGATAGGGCTGGTTCTTTACTGTTGAACCAGCTCATTCAAAATTTTCATTTCCTGCTAGAAATTAGTGTTCATCCATATTCTTCCTCACATGTTCAAACCCAAATCATTGAATATAAAATTGG ATGGAGGCTACGAATTGGGAAAGCTCTTCAGGAGGAGCTAGTGATACTGGTGATGAAGACAATTACGAACAAGACATAAACGACGAAGAAGAATGTCTCAGTGCATCTGGGTGCTTGCGCAAGCTGCAATTCAGGAAGCATGCTTCAACTGCTCGATGGAATGACCAAATGGGAATGGCAGAAGTTTTAGAGAATAAGGGCAGCCTTTGGACGACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTATTTCTTATTGAAGTCGGGGCCTTACATCTGCTGGATCATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAGGTAGCTGAGGGAAGAAGTGGCCGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTACATTGTTGGAAAGCATAGAGTTCCTTGGTCTCTAAAGAATGTTAGGAATGACTGTGACATTTCATCTCCAAGTTCTACTGAAAATAAAGGAGCATCAGATGTCAAATCAGAAGATGAGCAGTCGATTTGCAGGCTATTAAATGCTATTCAGCTCGATGAAGTGACACCCATTTTTGATGTTTTTCTTCCTCATAACAAGTTTAGAAAATCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGGGATATCCACCATCAAAAGAAGAGATTGAAGTTCTTGAGAGAACATCAAGAGGCATTCCAATGAAATATTGTCACGTTGAACATGGAAGAGTCTGCTTCTTTTCATTTGATAAGGTGGAGCTCCCTCTCTTACCTTGA MEATNWESSSGGASDTGDEDNYEQDINDEEECLSASGCLRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGRSGRLWEQFEVYRHLKSLGYIVGKHRVPWSLKNVRNDCDISSPSSTENKGASDVKSEDEQSICRLLNAIQLDEVTPIFDVFLPHNKFRKSSPGDPNFMVCLTRGYPPSKEEIEVLERTSRGIPMKYCHVEHGRVCFFSFDKVELPLLP* Homology
BLAST of CSPI04G16670 vs. ExPASy Swiss-Prot
Match: O74908 (Probable tRNA-splicing endonuclease subunit sen54 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sen54 PE=3 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 7.2e-06 Identity = 39/123 (31.71%), Postives = 61/123 (49.59%), Query Frame = 0
BLAST of CSPI04G16670 vs. ExPASy Swiss-Prot
Match: Q74ZJ5 (tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=SEN54 PE=3 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 3.0e-04 Identity = 32/102 (31.37%), Postives = 52/102 (50.98%), Query Frame = 0
BLAST of CSPI04G16670 vs. ExPASy TrEMBL
Match: A0A0A0KXV5 (tRNA_int_end_N2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G334710 PE=3 SV=1) HSP 1 Score: 553.5 bits (1425), Expect = 4.8e-154 Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of CSPI04G16670 vs. ExPASy TrEMBL
Match: A0A1S4E447 (uncharacterized protein LOC103501474 OS=Cucumis melo OX=3656 GN=LOC103501474 PE=3 SV=1) HSP 1 Score: 513.5 bits (1321), Expect = 5.5e-142 Identity = 246/260 (94.62%), Postives = 252/260 (96.92%), Query Frame = 0
BLAST of CSPI04G16670 vs. ExPASy TrEMBL
Match: A0A6J1I8D9 (tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1) HSP 1 Score: 466.8 bits (1200), Expect = 5.9e-128 Identity = 222/267 (83.15%), Postives = 247/267 (92.51%), Query Frame = 0
BLAST of CSPI04G16670 vs. ExPASy TrEMBL
Match: A0A6J1ICR8 (tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1) HSP 1 Score: 466.8 bits (1200), Expect = 5.9e-128 Identity = 222/267 (83.15%), Postives = 247/267 (92.51%), Query Frame = 0
BLAST of CSPI04G16670 vs. ExPASy TrEMBL
Match: A0A6J1I794 (tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1) HSP 1 Score: 466.8 bits (1200), Expect = 5.9e-128 Identity = 222/267 (83.15%), Postives = 247/267 (92.51%), Query Frame = 0
BLAST of CSPI04G16670 vs. NCBI nr
Match: XP_011653726.1 (uncharacterized protein LOC101210680 isoform X2 [Cucumis sativus] >KGN54460.1 hypothetical protein Csa_012673 [Cucumis sativus]) HSP 1 Score: 553.5 bits (1425), Expect = 9.9e-154 Identity = 266/267 (99.63%), Postives = 267/267 (100.00%), Query Frame = 0
BLAST of CSPI04G16670 vs. NCBI nr
Match: XP_016902999.1 (PREDICTED: uncharacterized protein LOC103501474 [Cucumis melo]) HSP 1 Score: 513.5 bits (1321), Expect = 1.1e-141 Identity = 246/260 (94.62%), Postives = 252/260 (96.92%), Query Frame = 0
BLAST of CSPI04G16670 vs. NCBI nr
Match: XP_031739606.1 (uncharacterized protein LOC101210680 isoform X1 [Cucumis sativus]) HSP 1 Score: 510.4 bits (1313), Expect = 9.6e-141 Identity = 254/276 (92.03%), Postives = 257/276 (93.12%), Query Frame = 0
BLAST of CSPI04G16670 vs. NCBI nr
Match: XP_038883355.1 (uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883357.1 uncharacterized protein LOC120074337 [Benincasa hispida]) HSP 1 Score: 479.2 bits (1232), Expect = 2.4e-131 Identity = 231/267 (86.52%), Postives = 251/267 (94.01%), Query Frame = 0
BLAST of CSPI04G16670 vs. NCBI nr
Match: XP_022973337.1 (tRNA-splicing endonuclease subunit Sen54 isoform X1 [Cucurbita maxima]) HSP 1 Score: 466.8 bits (1200), Expect = 1.2e-127 Identity = 222/267 (83.15%), Postives = 247/267 (92.51%), Query Frame = 0
BLAST of CSPI04G16670 vs. TAIR 10
Match: AT3G57360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). ) HSP 1 Score: 236.9 bits (603), Expect = 1.9e-62 Identity = 116/267 (43.45%), Postives = 173/267 (64.79%), Query Frame = 0
BLAST of CSPI04G16670 vs. TAIR 10
Match: AT3G02370.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1). ) HSP 1 Score: 179.1 bits (453), Expect = 4.7e-45 Identity = 85/175 (48.57%), Postives = 122/175 (69.71%), Query Frame = 0
BLAST of CSPI04G16670 vs. TAIR 10
Match: AT3G02370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). ) HSP 1 Score: 166.0 bits (419), Expect = 4.1e-41 Identity = 78/164 (47.56%), Postives = 114/164 (69.51%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|