CSPI04G16530 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G16530
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrotransposon protein
Location	Chr4: 13960756 .. 13961720 (+)
RNA-Seq Expression	CSPI04G16530
Synteny	CSPI04G16530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAGAGGGCTGATAATGAAACATTCAAATCGAGATATTTGGTACATGTTCAAAAACTAACGAAAGAAAAAATTCTTGGAAGCAACATACAAGTAACTCCAATTTAGAGTCGAAAAGTGAAAATTTTGAAGAACCAGTTCACTATCATAGTAGAGATGATGGGGCCAGCATGTAGTGAGTTTGGTTGAAATGAGGAATGAAAGTGCACTGAGGCAAAGAAACATGTGTTCGATGACTAGGTTAAGGTAAGACGATGAATATAATTCATACTTTCTATAAAAGTAAATTATAATATACTTACGTTTGTTAACTTCATATAGGGACACCTCAATGCTCGAGGTCTACTGAACAAACCATTTCCTTACTTGTATGACTTGAAAATTGTGTTTGGTAGAGATAGGGCGACCGGTGGTAGATGTAAGACACTCGTTGAAATGGACTCACAGACTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAAACTTTGATATTCCAAATCCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCCACTCCAACAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCAGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTCCAAGAAAATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACATAAACAATTATTATGCTAAATTACAGACTATTCTTGGAATGAACGTGAACGATTGTTTAATTGTAGTTGAGTCTCTATTACCTTATCCCATGATGTTGCACAGACTACCCAGCAGAATGGAAGTACATAAAATGCATGTGTATCTTAGGAAGACAACTATAATCATCATTAAATGTAACTTTACTTAATTTTCATTTTTGTTTAACCATTTTGGTTATGCTTACTTTTGAAACATACTAGAC

mRNA sequence

CTAGAGGGCTGATAATGAAACATTCAAATCGAGATATTTGGTACATGTTCAAAAACTAACGAAAGAAAAAATTCTTGGAAGCAACATACAAGTAACTCCAATTTAGAGTCGAAAAGTGAAAATTTTGAAGAACCAGTTCACTATCATAGTAGAGATGATGGGGCCAGCATGTAGTGAGTTTGGTTGAAATGAGGAATGAAAGTGCACTGAGGCAAAGAAACATGTGTTCGATGACTAGGTTAAGGTAAGACGATGAATATAATTCATACTTTCTATAAAAGTAAATTATAATATACTTACGTTTGTTAACTTCATATAGGGACACCTCAATGCTCGAGGTCTACTGAACAAACCATTTCCTTACTTGTATGACTTGAAAATTGTGTTTGGTAGAGATAGGGCGACCGGTGGTAGATGTAAGACACTCGTTGAAATGGACTCACAGACTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAAACTTTGATATTCCAAATCCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCCACTCCAACAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCAGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTCCAAGAAAATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACATAAACAATTATTATGCTAAATTACAGACTATTCTTGGAATGAACGTGAACGATTGTTTAATTGTAGTTGAGTCTCTATTACCTTATCCCATGATGTTGCACAGACTACCCAGCAGAATGGAAGTACATAAAATGCATGTGTATCTTAGGAAGACAACTATAATCATCATTAAATGTAACTTTACTTAATTTTCATTTTTGTTTAACCATTTTGGTTATGCTTACTTTTGAAACATACTAGAC

Coding sequence (CDS)

ATGGACTCACAGACTGCAAAAGATATTGAGGAAGATGACATGGACATTAATCTCGAAAACTTTGATATTCCAAATCCATATATACTTGAGCCACCATCTGGGCAGGACATGTCATCCACTCCAACAAGTATGGCACATGATGCAAGATCATCTAGGCTAAGTAAGAAAAGGCAGTCATATTCAGAGGACCTCATGGACACATTTCGTACAGACATGCGAGAAACTTCCAAGAAAATTGGAAAGATTGTTGCATGGCAGAAAGTAAAAATAGAAATAGAATCATACATACATAAACAATTATTATGCTAA

Protein sequence

MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC*

Homology

[Close]

BLAST of CSPI04G16530 vs. ExPASy TrEMBL
Match: A0A0A0L1J1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G333120 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.8e-45
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSY 60
           MDSQTAKDIEEDDMDINL NFDIPN YILEPPSGQDMSSTPTSMAHDARSSRLSKK +SY
Sbjct: 22  MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 81

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC 103
           SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC
Sbjct: 82  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC 123

[Close]

BLAST of CSPI04G16530 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.6e-33
Identity = 76/97 (78.35%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 4   QTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSED 63
           +TA+DIEEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSMAHDA SSR SKKR+SYS D
Sbjct: 113 KTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD 172

Query: 64  LMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           LMDTFR  MRETSK+IGKI AWQ+ K+EIES +HK+L
Sbjct: 173 LMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRL 209

[Close]

BLAST of CSPI04G16530 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.7e-33
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSY 60
           M SQTA+D EEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSM HDA SSR SKKR+SY
Sbjct: 260 MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSY 319

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           S DLMDTFR  MRETSK+IGKI  WQ+ K+EIES +HK+L
Sbjct: 320 SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRL 359

[Close]

BLAST of CSPI04G16530 vs. ExPASy TrEMBL
Match: A0A5A7VGQ0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00930 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSY 60
           M  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKR+SY
Sbjct: 69  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 128

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           SEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Sbjct: 129 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRL 168

[Close]

BLAST of CSPI04G16530 vs. ExPASy TrEMBL
Match: A0A1S3CC17 (uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 2.3e-32
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSY 60
           M  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKR+SY
Sbjct: 68  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 127

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           SEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Sbjct: 128 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRL 167

[Close]

BLAST of CSPI04G16530 vs. NCBI nr
Match: KAE8649593.1 (hypothetical protein Csa_012732 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 3.8e-45
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSY 60
           MDSQTAKDIEEDDMDINL NFDIPN YILEPPSGQDMSSTPTSMAHDARSSRLSKK +SY
Sbjct: 1   MDSQTAKDIEEDDMDINLGNFDIPNSYILEPPSGQDMSSTPTSMAHDARSSRLSKKMRSY 60

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC 103
           SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC
Sbjct: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQLLC 102

[Close]

BLAST of CSPI04G16530 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 7.4e-33
Identity = 76/97 (78.35%), Postives = 87/97 (89.69%), Query Frame = 0


Query: 4   QTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSYSED 63
           +TA+DIEEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSMAHDA SSR SKKR+SYS D
Sbjct: 113 KTARDIEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGD 172

Query: 64  LMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           LMDTFR  MRETSK+IGKI AWQ+ K+EIES +HK+L
Sbjct: 173 LMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKRL 209

[Close]

BLAST of CSPI04G16530 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 9.7e-33
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSY 60
           M SQTA+D EEDDMDINLE+FDIPNP+ LEPPSG+DM STPTSM HDA SSR SKKR+SY
Sbjct: 260 MSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSKKRRSY 319

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           S DLMDTFR  MRETSK+IGKI  WQ+ K+EIES +HK+L
Sbjct: 320 SGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRL 359

[Close]

BLAST of CSPI04G16530 vs. NCBI nr
Match: XP_008460440.1 (PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 4.8e-32
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSY 60
           M  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKR+SY
Sbjct: 68  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 127

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           SEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Sbjct: 128 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRL 167

[Close]

BLAST of CSPI04G16530 vs. NCBI nr
Match: KAA0067273.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 147.9 bits (372), Expect = 4.8e-32
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 1   MDSQTAKDIEEDDMDINLENFDIPNPYILEPPSGQDMSSTPTSMAHDARSSRLSKKRQSY 60
           M  Q A+D EEDDMDINLE+FDIPNP+ LEPPSG+DMSSTPTSMAHD  SS+ SKKR+SY
Sbjct: 69  MGLQIARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMSSTPTSMAHDVGSSKPSKKRRSY 128

Query: 61  SEDLMDTFRTDMRETSKKIGKIVAWQKVKIEIESYIHKQL 101
           SEDLMDTFR  MRETSK+I KI AWQ+ K+EIES IHK+L
Sbjct: 129 SEDLMDTFRASMRETSKEIRKIAAWQREKMEIESSIHKRL 168

The following BLAST results are available for this feature:

BLAST of CSPI04G16530 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G16530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1J1	1.8e-45	96.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G333120 PE=4 SV=1	[more]
A0A5A7U7F7	3.6e-33	78.35	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C7T4	4.7e-33	76.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGQ0	2.3e-32	76.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CC17	2.3e-32	76.00	uncharacterized protein LOC103499248 OS=Cucumis melo OX=3656 GN=LOC103499248 PE=...	[more]

BLAST of CSPI04G16530 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649593.1	3.8e-45	96.08	hypothetical protein Csa_012732 [Cucumis sativus]	[more]
KAA0050106.1	7.4e-33	78.35	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07921.1	9.7e-33	76.00	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
XP_008460440.1	4.8e-32	76.00	PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]	[more]
KAA0067273.1	4.8e-32	76.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G16530 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G16530.1	CSPI04G16530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032259	methylation
biological_process	GO:0016070	RNA metabolic process
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016740	transferase activity