CSPI04G15610 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G15610
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 12953549 .. 12954681 (+)
RNA-Seq Expression	CSPI04G15610
Synteny	CSPI04G15610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGATCTAATTTCCGACTATGTGAAAGGTGACATGATTCAATACAAATTTGTGTACATCCAAACTATCAATGTACTAAAAAATCTATGCTTATATTTTAAAAATTCGACAAAAGAAAAGAATTTGATGTGAAATGAATCGCTAATATCTTCGTTAGGTCAAATAGATACAAAAGATCACACTTACAGTAAAACAATAATTTAACACCAACAAAACAAATATAGTTAAAATTATTTTATTTTATTTTTGTTTTTAATATAATAACAACGATATAATTAAAATTGTAAAAAAATATTTATATTAAAAATGTAAAGAAAAATATCAAATATCTATAGAATTTTAATTTTGTCATTGAAGGGGAAAAATAGACCAAAAAGAAAAAAGAAAAAAAATAAAAGAAAATAAAAGAAAGTGTTACCATTTAATAGGCAAAAAATAAAAATAATAGTAAGCTTCTCAAGCTCCTTAATATTTTTGATTTGGTATAGTCCCTTCATCTTTTTGCACCCACGTTTCTTCCTCTCTCTTCCCCCGTGACATTGATTATTAACTATCATCTTCTTTCTTTCTTCCTTAGGGTTTCCAATGCGATTTCCACTCTTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGGTTTTATTCCTCCTTTTCTCTTTTTCTCTTTTCGTTTTCTACTACTTTTCTTTTTTATTCTTTTATTCCTCTGTTCTTTTTACGTATCATTTTCTTCCTTTGCTGCTTATTTGCTGTCAATTTGCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGTTGTTTCATCAGTTAGGGTTGTGGGTTTTCGTTATATGAGTAATGCGGTTATTAGTTGGGGTAAGCGGTAGTTATTATGATTTTAATTTTGTGTTGTTTTGGGTTTTTTTTTTGGACTTGTAGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

mRNA sequence

ATGGAGGATCTAATTTCCGACTATGTGAAAGGTGACATGATTCAATACAAATTTGTGTACATCCAAACTATCAATGGTTTCCAATGCGATTTCCACTCTTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGTTGTTTCATCAGTTAGGGTTGTGGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

Coding sequence (CDS)

ATGGAGGATCTAATTTCCGACTATGTGAAAGGTGACATGATTCAATACAAATTTGTGTACATCCAAACTATCAATGGTTTCCAATGCGATTTCCACTCTTCTTCTAACCTCAATTATGTAGCTTTCTTCTTCGATTTTCCATCTCAATCTTTCTTCCACTACGCCTCCTTCTCAATTTCTGATTTCCCTCCTTTTTTTTTTCTCTTACTTCCTTCTTCATCCCCGCCGTTGCTGGATCTTACTTCCGGCACGGGTTCATACTCGATTGCAATTGCTACCTCAGAATCGAAACACCGGGAGTATGGGATTTTGCTTTATTTCAGGTTGTTTCATCAGTTAGGGTTGTGGGCTTGTGCAGAAAATTGGGCTGTTGGTGAAGTTCAGGACTTTCCCTGTGTTTGA

Protein sequence

MEDLISDYVKGDMIQYKFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSISDFPPFFFLLLPSSSPPLLDLTSGTGSYSIAIATSESKHREYGILLYFRLFHQLGLWACAENWAVGEVQDFPCV*

Homology

[Close]

BLAST of CSPI04G15610 vs. ExPASy TrEMBL
Match: A0A0A0KXG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307920 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.7e-38
Identity = 94/143 (65.73%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 1   MEDLISDYVKGDMIQYKFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60
           MEDLI DYVKGDMIQY+FVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS
Sbjct: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60

Query: 61  DFPPFFFLLLPSSSPPLLDLTSGTGSYSIAIATSESKHREYGILL----YFRLFHQLGLW 120
           DFPPFFF L              T  +  A+A S  +H   G +L    Y R+    G+W
Sbjct: 61  DFPPFFFSL--------------TSFFIPAVAGSYFRH---GFILDCNCYLRI-ETPGVW 120

Query: 121 ------ACAENWAVGEVQDFPCV 134
                 ACAENWAVGEVQDFPCV
Sbjct: 121 DFALFQACAENWAVGEVQDFPCV 125

[Close]

BLAST of CSPI04G15610 vs. NCBI nr
Match: KGN54350.1 (hypothetical protein Csa_018029 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 7.6e-38
Identity = 94/143 (65.73%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 1   MEDLISDYVKGDMIQYKFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60
           MEDLI DYVKGDMIQY+FVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS
Sbjct: 1   MEDLIFDYVKGDMIQYEFVYIQTINGFQCDFHSSSNLNYVAFFFDFPSQSFFHYASFSIS 60

Query: 61  DFPPFFFLLLPSSSPPLLDLTSGTGSYSIAIATSESKHREYGILL----YFRLFHQLGLW 120
           DFPPFFF L              T  +  A+A S  +H   G +L    Y R+    G+W
Sbjct: 61  DFPPFFFSL--------------TSFFIPAVAGSYFRH---GFILDCNCYLRI-ETPGVW 120

Query: 121 ------ACAENWAVGEVQDFPCV 134
                 ACAENWAVGEVQDFPCV
Sbjct: 121 DFALFQACAENWAVGEVQDFPCV 125

The following BLAST results are available for this feature:

BLAST of CSPI04G15610 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G15610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXG8	3.7e-38	65.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G307920 PE=4 SV=1	[more]

BLAST of CSPI04G15610 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54350.1	7.6e-38	65.73	hypothetical protein Csa_018029 [Cucumis sativus]	[more]

BLAST of CSPI04G15610 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G15610.1	CSPI04G15610.1	mRNA