CSPI04G14590 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G14590
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTransducin/WD40 repeat-like superfamily protein, putative
LocationChr4: 12249878 .. 12250611 (-)
RNA-Seq ExpressionCSPI04G14590
SyntenyCSPI04G14590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTATTCTACTTCTTTCGATAATTTCACTCGGTAATGTTTTCAATCTCCTCAGGATCTGAACTTCTATAATTTCTCTTGATTGATTCCAGGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCCGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGGTACTGTTCGAATTATGAATTGAAATTGAAATATTGACTAACAAATGTACGAACTATATAAAAAGTTGAATAGAAATAAAAACATCATAGGCTTCTGTCTGTTCATTTGCATCTTGTAGTCATACCTGTACCGCTTCTGA

mRNA sequence

ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCCGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGTCATACCTGTACCGCTTCTGA

Coding sequence (CDS)

ATGGAGGCCCCAGGAGGCGGAAATGGAGGTTTTAGTGCACGCGCCACCGTAGAAGATATCCGGAGACGGCTGCTTCGACCGTCATCGTCACTTCACTCTCCTCCGCCGACGCCGTTTTCTCTCGGTAAAAATGCTCAAGACCGAAATTCCTCGCAATTCGAGGCGAATTACATGAGGCTGTCCCGGAGTCGAGAAGCAAAAAAGGGAGAAACATCAAGCAAGGAGAGGAAGCTCGAAGATTACTTGGATCCGGTTCTTCTCTCTGCAATTTCTTCGAAGATCAGTCGCTTGGAAAAGATTCCGAAGATAACAGTGAAGAGAAAGGTTAGGGATTTCGAGTGGGATGTCGATGAATTGAGGATGTGGACGGAGGATACGGCAGTTGGAAAGGAGAAAATTGATGCTGTTAATCTTGGTAACGACTCTGATAATCTCATTGAAAACGATGTTGACGGAGATGTTAAGTTTTCTACTCCGTTTCAAAAGTTTGAGCAGAATGCATTGTCATACCTGTACCGCTTCTGA

Protein sequence

MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRLSRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALSYLYRF*
Homology
BLAST of CSPI04G14590 vs. ExPASy TrEMBL
Match: A0A0A0L270 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.1e-86
Identity = 168/174 (96.55%), Postives = 170/174 (97.70%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
           MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL
Sbjct: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60

Query: 61  SRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
           S SREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR
Sbjct: 61  SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120

Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALSYLYRF 175
           MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL+ +  F
Sbjct: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNALASVCSF 174

BLAST of CSPI04G14590 vs. ExPASy TrEMBL
Match: A0A5A7STW4 (Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00230 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.7e-73
Identity = 152/176 (86.36%), Postives = 157/176 (89.20%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTP--------FSLGKNAQDRNSSQ 60
           MEA GGG+GGFS RATVEDI+RRLLRPSSSLHSPPP P        FSLGKNAQDRNSSQ
Sbjct: 1   MEARGGGDGGFSPRATVEDIQRRLLRPSSSLHSPPPPPTPLFYFFQFSLGKNAQDRNSSQ 60

Query: 61  FEANYMRLSRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDF 120
           FEANYMRLSRSR     E SSKERKLEDYLDPVLLSAISSKI+R EKIP+ITVKR+VRDF
Sbjct: 61  FEANYMRLSRSR-----EISSKERKLEDYLDPVLLSAISSKINRFEKIPRITVKREVRDF 120

Query: 121 EWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           EW VDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL
Sbjct: 121 EWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 171

BLAST of CSPI04G14590 vs. ExPASy TrEMBL
Match: A0A1S3BHM2 (uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490160 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.7e-73
Identity = 152/176 (86.36%), Postives = 157/176 (89.20%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTP--------FSLGKNAQDRNSSQ 60
           MEA GGG+GGFS RATVEDI+RRLLRPSSSLHSPPP P        FSLGKNAQDRNSSQ
Sbjct: 1   MEARGGGDGGFSPRATVEDIQRRLLRPSSSLHSPPPPPTPLFYFFQFSLGKNAQDRNSSQ 60

Query: 61  FEANYMRLSRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDF 120
           FEANYMRLSRSR     E SSKERKLEDYLDPVLLSAISSKI+R EKIP+ITVKR+VRDF
Sbjct: 61  FEANYMRLSRSR-----EISSKERKLEDYLDPVLLSAISSKINRFEKIPRITVKREVRDF 120

Query: 121 EWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           EW VDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL
Sbjct: 121 EWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 171

BLAST of CSPI04G14590 vs. ExPASy TrEMBL
Match: A0A6J1I9M7 (uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471294 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 2.0e-60
Identity = 126/168 (75.00%), Postives = 143/168 (85.12%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
           ME  GGG+GGFS RATVEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1   MEVGGGGDGGFSPRATVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60

Query: 61  SRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
            R REAK+GET+S++RKLEDYLDPVLLSA+SSKISR +K+PK+TVKR+VRDFEW V ELR
Sbjct: 61  YRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQKVPKMTVKREVRDFEWPVAELR 120

Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           M  +D+ VGK K + VNLGNDSD L END +GDVK STPFQKFEQ AL
Sbjct: 121 MLMDDSTVGKGKTNTVNLGNDSDYLTENDEEGDVKISTPFQKFEQTAL 167

BLAST of CSPI04G14590 vs. ExPASy TrEMBL
Match: A0A6J1HFI5 (uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC111463108 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 7.6e-60
Identity = 124/168 (73.81%), Postives = 144/168 (85.71%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
           ME  GGG+GGFS RA+VEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1   MEVGGGGDGGFSPRASVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60

Query: 61  SRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
            R +EAK+GET+ ++RKLEDYLDPVLLSA+SSKISR +K+PK+ VKR+VRDFEW V ELR
Sbjct: 61  YRKQEAKEGETARRKRKLEDYLDPVLLSAVSSKISRAQKVPKMKVKREVRDFEWPVAELR 120

Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           M  +D+ VGK KI+ VNLGNDSDNL EN+ +GDVKFSTPFQKFEQ AL
Sbjct: 121 MLMDDSTVGKGKINTVNLGNDSDNLTENNEEGDVKFSTPFQKFEQTAL 167

BLAST of CSPI04G14590 vs. NCBI nr
Match: KAE8649528.1 (hypothetical protein Csa_017968 [Cucumis sativus])

HSP 1 Score: 325.5 bits (833), Expect = 2.9e-85
Identity = 167/168 (99.40%), Postives = 167/168 (99.40%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
           MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL
Sbjct: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60

Query: 61  SRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
           S SREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR
Sbjct: 61  SWSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120

Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL
Sbjct: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 168

BLAST of CSPI04G14590 vs. NCBI nr
Match: XP_008447784.1 (PREDICTED: uncharacterized protein LOC103490160 isoform X2 [Cucumis melo] >KAA0032639.1 putative Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK23519.1 putative Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 5.6e-73
Identity = 152/176 (86.36%), Postives = 157/176 (89.20%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTP--------FSLGKNAQDRNSSQ 60
           MEA GGG+GGFS RATVEDI+RRLLRPSSSLHSPPP P        FSLGKNAQDRNSSQ
Sbjct: 1   MEARGGGDGGFSPRATVEDIQRRLLRPSSSLHSPPPPPTPLFYFFQFSLGKNAQDRNSSQ 60

Query: 61  FEANYMRLSRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDF 120
           FEANYMRLSRSR     E SSKERKLEDYLDPVLLSAISSKI+R EKIP+ITVKR+VRDF
Sbjct: 61  FEANYMRLSRSR-----EISSKERKLEDYLDPVLLSAISSKINRFEKIPRITVKREVRDF 120

Query: 121 EWDVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           EW VDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL
Sbjct: 121 EWHVDELRMWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 171

BLAST of CSPI04G14590 vs. NCBI nr
Match: XP_038877636.1 (uncharacterized protein LOC120069887 isoform X1 [Benincasa hispida])

HSP 1 Score: 264.2 bits (674), Expect = 7.8e-67
Identity = 137/168 (81.55%), Postives = 151/168 (89.88%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
           ME  GGG+GGFS RATVEDI+RRL+RPSSSLHS PPTPFS GK AQ R SSQFEA YMRL
Sbjct: 1   MEPRGGGDGGFSPRATVEDIQRRLVRPSSSLHSLPPTPFSRGKAAQGRISSQFEAKYMRL 60

Query: 61  SRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
            ++REAKKGET+SK+RKLEDYLDPVLLSA+SSKISR+EKIPK+TVKR+VRDFEW V+ELR
Sbjct: 61  YQNREAKKGETASKKRKLEDYLDPVLLSAVSSKISRMEKIPKMTVKREVRDFEWPVNELR 120

Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           M  EDT VGKEKIDAVNLGND+DNLIEN+ DGDVKFSTPFQKFE  AL
Sbjct: 121 MLMEDTTVGKEKIDAVNLGNDTDNLIENNEDGDVKFSTPFQKFEHTAL 168

BLAST of CSPI04G14590 vs. NCBI nr
Match: XP_023518840.1 (uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 249.2 bits (635), Expect = 2.6e-62
Identity = 129/168 (76.79%), Postives = 146/168 (86.90%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
           ME  GGG+GGFS RATVEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1   MEVGGGGDGGFSPRATVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60

Query: 61  SRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
            R REAK+GET+S++RKLEDYLDPVLLSA+SSKISR +K+PK+TVKR+VRDFEW V ELR
Sbjct: 61  YRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQKVPKMTVKREVRDFEWPVAELR 120

Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           M  +D+ VGK KI+ VNLGNDSDNL END +GDVKFSTPFQKFEQ AL
Sbjct: 121 MLMDDSTVGKGKINTVNLGNDSDNLTENDEEGDVKFSTPFQKFEQTAL 167

BLAST of CSPI04G14590 vs. NCBI nr
Match: XP_022972790.1 (uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima])

HSP 1 Score: 241.9 bits (616), Expect = 4.2e-60
Identity = 126/168 (75.00%), Postives = 143/168 (85.12%), Query Frame = 0

Query: 1   MEAPGGGNGGFSARATVEDIRRRLLRPSSSLHSPPPTPFSLGKNAQDRNSSQFEANYMRL 60
           ME  GGG+GGFS RATVEDI+RRLLRP SS+HSPPPTPFS GK+ Q RNSSQFEAN M L
Sbjct: 1   MEVGGGGDGGFSPRATVEDIQRRLLRP-SSIHSPPPTPFSRGKDVQGRNSSQFEANAMGL 60

Query: 61  SRSREAKKGETSSKERKLEDYLDPVLLSAISSKISRLEKIPKITVKRKVRDFEWDVDELR 120
            R REAK+GET+S++RKLEDYLDPVLLSA+SSKISR +K+PK+TVKR+VRDFEW V ELR
Sbjct: 61  YRKREAKEGETASRKRKLEDYLDPVLLSAVSSKISRAQKVPKMTVKREVRDFEWPVAELR 120

Query: 121 MWTEDTAVGKEKIDAVNLGNDSDNLIENDVDGDVKFSTPFQKFEQNAL 169
           M  +D+ VGK K + VNLGNDSD L END +GDVK STPFQKFEQ AL
Sbjct: 121 MLMDDSTVGKGKTNTVNLGNDSDYLTENDEEGDVKISTPFQKFEQTAL 167

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2708.1e-8696.55Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295500 PE=4 SV=1[more]
A0A5A7STW42.7e-7386.36Putative Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. ma... [more]
A0A1S3BHM22.7e-7386.36uncharacterized protein LOC103490160 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1I9M72.0e-6075.00uncharacterized protein LOC111471294 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1HFI57.6e-6073.81uncharacterized protein LOC111463108 OS=Cucurbita moschata OX=3662 GN=LOC1114631... [more]
Match NameE-valueIdentityDescription
KAE8649528.12.9e-8599.40hypothetical protein Csa_017968 [Cucumis sativus][more]
XP_008447784.15.6e-7386.36PREDICTED: uncharacterized protein LOC103490160 isoform X2 [Cucumis melo] >KAA00... [more]
XP_038877636.17.8e-6781.55uncharacterized protein LOC120069887 isoform X1 [Benincasa hispida][more]
XP_023518840.12.6e-6276.79uncharacterized protein LOC111782239 [Cucurbita pepo subsp. pepo][more]
XP_022972790.14.2e-6075.00uncharacterized protein LOC111471294 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 60..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..52

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G14590.1CSPI04G14590.1mRNA