CSPI04G14510 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G14510
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE2
Location	Chr4: 12195376 .. 12196052 (-)
RNA-Seq Expression	CSPI04G14510
Synteny	CSPI04G14510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTATATATAGGCTTGTATCTCTACTAAATAATGAATGCAATATAGATTAATTCCATAAAATCAACATACAGTATCTCACACATACTCGAGCGGATATTGCTTACATTGTGAATCGTTTAAGCCAAGTTCTCCAAAGACCTACTGATATTCATTGGCAAGATGTAAAAAGAGTGCTCCGATACTTGAGTGGTACTAAATCTTTTGGCCTCAGGTTCCAACAAAGTTCTTATTTATCCATCTCTCCTATTCTAATGTCGATTGGGCATCAAATGTTGATGATAGAAAATCAGTTTATGCTTATTGTGTTTTCATTGGTGGAAATTTGATGTCTTGGTCCTCTAAGAAACAGCACGTAGTTGCTCACTCAAGCACCGAGTCTGAGTATCGTACCCTTGCCCTTGTTGCAACTGAAGTTATATGATTAAAGTAGTTGCTTTTAAAGTTAAATGTTTATTTGCCTCTTAAACCAATAATATGGTGTGATAATTTGAGTGCAGGAGCTCTTGTCACAAACTCAGTTTTTCATGCCTAAACAAATCATATAAAAATCGACGTTCGCTTTGTTCAGGATCATGTTCTTCAAGAAAATCTGGATGTTCTTTATGTCCGTTCTATGGATCAATTGGCAGATCGTTTAACAAAGTCCCTCACCCACTCTCAATTTCAAAACTGA

mRNA sequence

ATGGTTATATATAGGCTTGTTCCAACAAAGTTCTTATTTATCCATCTCTCCTATTCTAATGTCGATTGGGCATCAAATGTTGATGATAGAAAATCAGTTTATGCTTATTGTGTTTTCATTGGTGGAAATTTGATGTCTTGGTCCTCTAAGAAACAGCACGTAGTTGCTCACTCAAGCACCGAGTCTGAGTATCGTACCCTTGCCCTTGTTGCAACTGAAGATCATGTTCTTCAAGAAAATCTGGATGTTCTTTATGTCCGTTCTATGGATCAATTGGCAGATCGTTTAACAAAGTCCCTCACCCACTCTCAATTTCAAAACTGA

Coding sequence (CDS)

ATGGTTATATATAGGCTTGTTCCAACAAAGTTCTTATTTATCCATCTCTCCTATTCTAATGTCGATTGGGCATCAAATGTTGATGATAGAAAATCAGTTTATGCTTATTGTGTTTTCATTGGTGGAAATTTGATGTCTTGGTCCTCTAAGAAACAGCACGTAGTTGCTCACTCAAGCACCGAGTCTGAGTATCGTACCCTTGCCCTTGTTGCAACTGAAGATCATGTTCTTCAAGAAAATCTGGATGTTCTTTATGTCCGTTCTATGGATCAATTGGCAGATCGTTTAACAAAGTCCCTCACCCACTCTCAATTTCAAAACTGA

Protein sequence

MVIYRLVPTKFLFIHLSYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATEDHVLQENLDVLYVRSMDQLADRLTKSLTHSQFQN*

Homology

[Close]

BLAST of CSPI04G14510 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-09
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE 74
           ++ + DWA     R+S   +C F+G N++SWS+K+Q  V+ SSTE+EYR LAL A E
Sbjct: 166 AFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 222

[Close]

BLAST of CSPI04G14510 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.2e-09
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 17   SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE 74
            +YS+ DWA + DD  S   Y V++G + +SWSSKKQ  V  SSTE+EYR++A  ++E
Sbjct: 1294 AYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSE 1350

[Close]

BLAST of CSPI04G14510 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 17   SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE 74
            +YS+ DWA + DD  S   Y V++G + +SWSSKKQ  V  SSTE+EYR++A  ++E
Sbjct: 1311 AYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSE 1367

[Close]

BLAST of CSPI04G14510 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 26/58 (44.83%), Postives = 34/58 (58.62%), Query Frame = 0


Query: 16  LSYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE 74
           + YS+ DWA +V+ R+S   Y   + G  +SW SKKQ  VA SSTE EY  L+    E
Sbjct: 72  VGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQE 129

[Close]

BLAST of CSPI04G14510 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-04
Identity = 24/56 (42.86%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 18   YSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE 74
            Y++ D A ++D+RKS   Y     G  +SW SK Q  VA S+TE+EY    + ATE
Sbjct: 1178 YTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEY----IAATE 1229

[Close]

BLAST of CSPI04G14510 vs. ExPASy TrEMBL
Match: A0A5D3BCJ6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00650 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.0e-19
Identity = 64/142 (45.07%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE--- 76
           +YS+ DWA+N+DDRKSV AYCVF+G NL+SWSSKK  VVA SSTESEYR L L A+E   
Sbjct: 68  AYSDADWAANIDDRKSVVAYCVFLGANLVSWSSKKPTVVARSSTESEYRALDLAASEIVW 127

Query: 77  -------------------------------------------------DHVLQENLDVL 107
                                                            D VL+  L+V 
Sbjct: 128 LKQLLEELHISQSRKPVLWCDNISVGALATNPVFHARTKHIEIDVHFIRDQVLRGVLEVR 187

[Close]

BLAST of CSPI04G14510 vs. ExPASy TrEMBL
Match: A0A5A7U5H7 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G00810 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 63/142 (44.37%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE--- 76
           +YS+ DWA+N+DDRKSV AYCVF+G NL+SWSSKK   VA SSTESEYR L L A+E   
Sbjct: 68  AYSDADWAANIDDRKSVVAYCVFLGANLVSWSSKKPTAVARSSTESEYRALDLAASEIVW 127

Query: 77  -------------------------------------------------DHVLQENLDVL 107
                                                            D VL+  L+V 
Sbjct: 128 LKQLLEELHISQSRKPVLWCDNISVGALATNPVFHARTKHIEIDVHFIRDQVLRGVLEVR 187

[Close]

BLAST of CSPI04G14510 vs. ExPASy TrEMBL
Match: A0A6J1DM39 (uncharacterized protein LOC111021822 OS=Momordica charantia OX=3673 GN=LOC111021822 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.9e-17
Identity = 65/165 (39.39%), Postives = 77/165 (46.67%), Query Frame = 0


Query: 2   VIYRLVPTKFLFIHL---------SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQ 61
           V+  L  TK + +H+         +YS+ DWASN+DDRKS+ AYCVF G  L+SWSSKKQ
Sbjct: 73  VLRYLSGTKHMGLHIQPSDTVSLTAYSDADWASNIDDRKSIAAYCVFFGNTLVSWSSKKQ 132

Query: 62  HVVAHSSTESEYRTLALVATE--------------------------------------- 106
             VA SSTES YR LA  + E                                       
Sbjct: 133 TAVARSSTESXYRALAHASAEIIWLRQLLGELGVNVSSPPIIWCDNISAGALATNPVFHA 192

[Close]

BLAST of CSPI04G14510 vs. ExPASy TrEMBL
Match: A0A5A7US38 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003580 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-16
Identity = 59/141 (41.84%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE--- 76
           ++S+ DWASN++DRKSV AYCVF+G NL SWS KKQ+VVA SSTESEYR LA   +E   
Sbjct: 231 AFSDADWASNINDRKSVAAYCVFVGNNLDSWSLKKQNVVARSSTESEYRALAHATSEIVW 290

Query: 77  -------------------------------------------------DHVLQENLDVL 106
                                                            D VL   L+V 
Sbjct: 291 ITQLLSELSILIHPKPILWCDNISVGALATNPVFHARTKHIEIDVHFVHDQVLCSALEVR 350

[Close]

BLAST of CSPI04G14510 vs. ExPASy TrEMBL
Match: A0A5D3E251 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001610 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.4e-16
Identity = 59/141 (41.84%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE--- 76
           ++S+ DWASN++DRKSV AYCVF+G NL SWS KKQ+VVA SSTESEYR LA   +E   
Sbjct: 231 AFSDADWASNINDRKSVAAYCVFVGNNLDSWSLKKQNVVARSSTESEYRALAHATSEIVW 290

Query: 77  -------------------------------------------------DHVLQENLDVL 106
                                                            D VL   L+V 
Sbjct: 291 ITQLLSELSILIHPKPILWCDNISVGALATNPVFHARTKHIEIDVHFVHDQVLCSALEVR 350

[Close]

BLAST of CSPI04G14510 vs. NCBI nr
Match: TYJ96769.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 8.3e-19
Identity = 64/142 (45.07%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE--- 76
           +YS+ DWA+N+DDRKSV AYCVF+G NL+SWSSKK  VVA SSTESEYR L L A+E   
Sbjct: 68  AYSDADWAANIDDRKSVVAYCVFLGANLVSWSSKKPTVVARSSTESEYRALDLAASEIVW 127

Query: 77  -------------------------------------------------DHVLQENLDVL 107
                                                            D VL+  L+V 
Sbjct: 128 LKQLLEELHISQSRKPVLWCDNISVGALATNPVFHARTKHIEIDVHFIRDQVLRGVLEVR 187

[Close]

BLAST of CSPI04G14510 vs. NCBI nr
Match: KAA0051133.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 63/142 (44.37%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE--- 76
           +YS+ DWA+N+DDRKSV AYCVF+G NL+SWSSKK   VA SSTESEYR L L A+E   
Sbjct: 68  AYSDADWAANIDDRKSVVAYCVFLGANLVSWSSKKPTAVARSSTESEYRALDLAASEIVW 127

Query: 77  -------------------------------------------------DHVLQENLDVL 107
                                                            D VL+  L+V 
Sbjct: 128 LKQLLEELHISQSRKPVLWCDNISVGALATNPVFHARTKHIEIDVHFIRDQVLRGVLEVR 187

[Close]

BLAST of CSPI04G14510 vs. NCBI nr
Match: XP_022154602.1 (uncharacterized protein LOC111021822 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 65/165 (39.39%), Postives = 77/165 (46.67%), Query Frame = 0


Query: 2   VIYRLVPTKFLFIHL---------SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQ 61
           V+  L  TK + +H+         +YS+ DWASN+DDRKS+ AYCVF G  L+SWSSKKQ
Sbjct: 73  VLRYLSGTKHMGLHIQPSDTVSLTAYSDADWASNIDDRKSIAAYCVFFGNTLVSWSSKKQ 132

Query: 62  HVVAHSSTESEYRTLALVATE--------------------------------------- 106
             VA SSTES YR LA  + E                                       
Sbjct: 133 TAVARSSTESXYRALAHASAEIIWLRQLLGELGVNVSSPPIIWCDNISAGALATNPVFHA 192

[Close]

BLAST of CSPI04G14510 vs. NCBI nr
Match: TYK30173.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-16
Identity = 59/141 (41.84%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE--- 76
           ++S+ DWASN++DRKSV AYCVF+G NL SWS KKQ+VVA SSTESEYR LA   +E   
Sbjct: 231 AFSDADWASNINDRKSVAAYCVFVGNNLDSWSLKKQNVVARSSTESEYRALAHATSEIVW 290

Query: 77  -------------------------------------------------DHVLQENLDVL 106
                                                            D VL   L+V 
Sbjct: 291 ITQLLSELSILIHPKPILWCDNISVGALATNPVFHARTKHIEIDVHFVHDQVLCSALEVR 350

[Close]

BLAST of CSPI04G14510 vs. NCBI nr
Match: KAA0057477.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-16
Identity = 59/141 (41.84%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE--- 76
           ++S+ DWASN++DRKSV AYCVF+G NL SWS KKQ+VVA SSTESEYR LA   +E   
Sbjct: 231 AFSDADWASNINDRKSVAAYCVFVGNNLDSWSLKKQNVVARSSTESEYRALAHATSEIVW 290

Query: 77  -------------------------------------------------DHVLQENLDVL 106
                                                            D VL   L+V 
Sbjct: 291 ITQLLSELSILIHPKPILWCDNISVGALATNPVFHARTKHIEIDVHFVHDQVLCSALEVR 350

[Close]

BLAST of CSPI04G14510 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-10
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 17  SYSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE 74
           ++ + DWA     R+S   +C F+G N++SWS+K+Q  V+ SSTE+EYR LAL A E
Sbjct: 166 AFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 222

[Close]

BLAST of CSPI04G14510 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-09
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 18  YSNVDWASNVDDRKSVYAYCVFIGGNLMSWSSKKQHVVAHSSTESEYRTLALVATE 74
           +S+  + S  D R+S   YC+F+G +L+SW SKKQ VV+ SS E+EYR L+    E
Sbjct: 445 FSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDE 500

The following BLAST results are available for this feature:

BLAST of CSPI04G14510 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92519	1.6e-09	47.37	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	6.2e-09	49.12	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.1e-08	49.12	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	2.6e-07	44.83	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	2.7e-04	42.86	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CSPI04G14510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCJ6	4.0e-19	45.07	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7U5H7	1.2e-18	44.37	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A6J1DM39	4.9e-17	39.39	uncharacterized protein LOC111021822 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7US38	2.4e-16	41.84	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003580...	[more]
A0A5D3E251	2.4e-16	41.84	Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001610...	[more]

BLAST of CSPI04G14510 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96769.1	8.3e-19	45.07	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0051133.1	2.4e-18	44.37	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
XP_022154602.1	1.0e-16	39.39	uncharacterized protein LOC111021822 [Momordica charantia]	[more]
TYK30173.1	5.1e-16	41.84	Copia protein [Cucumis melo var. makuwa]	[more]
KAA0057477.1	5.1e-16	41.84	Copia protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI04G14510 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.2e-10	47.37	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	6.4e-09	46.43	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 11..68
None	No IPR available	PANTHER	PTHR11439:SF354	SUBFAMILY NOT NAMED	coord: 11..68
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 18..101 e-value: 2.99921E-29 score: 100.235

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G14510.1	CSPI04G14510.1	mRNA