CSPI04G14160 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G14160
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 11979166 .. 11979866 (-)
RNA-Seq ExpressionCSPI04G14160
SyntenyCSPI04G14160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATATGGTTCTCTTTTTTCTCCTTTCCAAGTTTATATATAACAGGTAATCTAAGAGCATACCCATTGTCATAGTGTGGCCTTGTCAGAGCTTTGAATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGACTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCGACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGACACTGCCATATCATTTTTTACTTTTCATCAAGAATGCAATGTAATCAGAGTTCTTTATTTCTTTTCAAATGTTCTTTTACCAGAAATAATAACAAGTTTTCCCGATTTTATTATATCAAAGTATACAAAATCCAG

mRNA sequence

AATATGGTTCTCTTTTTTCTCCTTTCCAAGTTTATATATAACAGGTAATCTAAGAGCATACCCATTGTCATAGTGTGGCCTTGTCAGAGCTTTGAATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGACTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCGACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGACACTGCCATATCATTTTTTACTTTTCATCAAGAATGCAATGTAATCAGAGTTCTTTATTTCTTTTCAAATGTTCTTTTACCAGAAATAATAACAAGTTTTCCCGATTTTATTATATCAAAGTATACAAAATCCAG

Coding sequence (CDS)

ATGTCAGATATGATTTACAATGGCTCCGACTCCATTGGGCTGCTCATGCTAAATGCAAACGGCTATGACATACCGGAGTTCGGTTTCATGAGCCAACACCAGTCTGATGGAGACCCAATTGGAGACAACCCTGAGAGTGAACAGACTTACCACAGTTGTTATGGATGGTCGTCGAATGAAGTCGACCCCACCGATCTCTTCTTCAATTGCGAATACCTTTATGGCAATCAAAATGGTTGCATAAACGAGAGTACAACAGAACTCATTCTTTACCAGAATGAGAATCAACTTGAGGATTATAATGGTGATTCTAGAAACTTGTACTATGAATTTTCTTGGGATTGCCTTCGGTTTTGGTTTGGAATTGGGGAAGATGAGCAAGGTCAGGAACGTAATGGGCAAGAATTGACACCTGAAAATGACTGCAGATCAGATGCTTTGGCACTCCTAGAAGCCATCCTTGGGTATTGA

Protein sequence

MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWSSNEVDPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY*
Homology
[Close]
BLAST of CSPI04G14160 vs. ExPASy TrEMBL
Match: A0A0A0KZF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293140 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.0e-87
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWSSNE 60
           MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQ YHSCYGWSSNE
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60

Query: 61  VDPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120
           V+PTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF
Sbjct: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120

Query: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

[Close]
BLAST of CSPI04G14160 vs. ExPASy TrEMBL
Match: A0A5A7TUT5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001440 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 1.7e-82
Identity = 148/158 (93.67%), Postives = 151/158 (95.57%), Query Frame = 0 

Query: 1   MSDMIYNGSDSIGLLMLNAN--GYDIPEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWSS 60
           MSDMIYNGSDSIGLLMLNAN   Y I EFGFMSQHQSDGDPIGDNPESEQTYHSCYGW S
Sbjct: 1   MSDMIYNGSDSIGLLMLNANDYNYSIAEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWPS 60

Query: 61  NEVDPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 120
           NEV+PTDLFFNCEY YGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF
Sbjct: 61  NEVEPTDLFFNCEYPYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 120

Query: 121 WFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           WFG+GE+EQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 WFGLGEEEQGQERNGQELTPENDCRSDALALLEAILGY 158

[Close]
BLAST of CSPI04G14160 vs. NCBI nr
Match: KGN54204.1 (hypothetical protein Csa_017990 [Cucumis sativus])

HSP 1 Score: 332.4 bits (851), Expect = 2.1e-87
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWSSNE 60
           MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQ YHSCYGWSSNE
Sbjct: 1   MSDMIYNGSDSIGLLMLNANGYDIPEFGFMSQHQSDGDPIGDNPESEQAYHSCYGWSSNE 60

Query: 61  VDPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120
           V+PTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF
Sbjct: 61  VNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRFWF 120

Query: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 GIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

[Close]
BLAST of CSPI04G14160 vs. NCBI nr
Match: KAA0047323.1 (hypothetical protein E6C27_scaffold908G001440 [Cucumis melo var. makuwa])

HSP 1 Score: 315.1 bits (806), Expect = 3.5e-82
Identity = 148/158 (93.67%), Postives = 151/158 (95.57%), Query Frame = 0 

Query: 1   MSDMIYNGSDSIGLLMLNAN--GYDIPEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWSS 60
           MSDMIYNGSDSIGLLMLNAN   Y I EFGFMSQHQSDGDPIGDNPESEQTYHSCYGW S
Sbjct: 1   MSDMIYNGSDSIGLLMLNANDYNYSIAEFGFMSQHQSDGDPIGDNPESEQTYHSCYGWPS 60

Query: 61  NEVDPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 120
           NEV+PTDLFFNCEY YGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF
Sbjct: 61  NEVEPTDLFFNCEYPYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 120

Query: 121 WFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           WFG+GE+EQGQERNGQELTPENDCRSDALALLEAILGY
Sbjct: 121 WFGLGEEEQGQERNGQELTPENDCRSDALALLEAILGY 158

[Close]
BLAST of CSPI04G14160 vs. NCBI nr
Match: KAG6595286.1 (hypothetical protein SDJN03_11839, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.4 bits (446), Expect = 1.9e-40
Identity = 93/158 (58.86%), Postives = 112/158 (70.89%), Query Frame = 0 

Query: 7   NGSDSIGLLMLNANGYDIPE-------FGFMSQHQ-SDGDPIGDNPESEQTYHSCYGWSS 66
           +GS+SIGLLM NAN YD P         GF  QHQ SDGDPI D+PE ++T  SC+  S 
Sbjct: 4   SGSNSIGLLMANANSYDYPGRSPSPFWTGFTGQHQFSDGDPIEDDPEGDRTNLSCFENSQ 63

Query: 67  NEVDPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSWDCLRF 126
           NE+D +DL FN +  Y NQ+GC  E+  ELIL+ NE+Q EDY GD RNLYYEF W C R+
Sbjct: 64  NELDSSDLIFNGQDPYDNQSGCTMEN-RELILFHNEDQTEDYTGDPRNLYYEFDWACFRY 123

Query: 127 WFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 157
           WFG+GEDE  Q+ NGQEL  E DC S+A+ALLE+ILGY
Sbjct: 124 WFGLGEDE--QDWNGQELRLEQDCSSEAVALLESILGY 158

The following BLAST results are available for this feature:
BLAST of CSPI04G14160 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G14160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZF21.0e-8798.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293140 PE=4 SV=1[more]
A0A5A7TUT51.7e-8293.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CSPI04G14160 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54204.12.1e-8798.72hypothetical protein Csa_017990 [Cucumis sativus][more]
KAA0047323.13.5e-8293.67hypothetical protein E6C27_scaffold908G001440 [Cucumis melo var. makuwa][more]
KAG6595286.11.9e-4058.86hypothetical protein SDJN03_11839, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI04G14160 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G14160.1CSPI04G14160.1mRNA