CSPI04G13630 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G13630
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 11630360 .. 11631107 (-)
RNA-Seq ExpressionCSPI04G13630
SyntenyCSPI04G13630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAACTACACGTTTGTTTTCCAATGACAAAACAAACAAACAAACACACTTGCCTGCATTTTCTGCATTCCAACCCACCAAACACAAAACCCTCAACTTCCCCAAATGCTCATTTTTTACTCCAAATCAGATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAATGGATTACTAAATTTGTTTAATTTTTGTATACCCCCTTTTTCTTTTGTACAAACATCTTAGAGTGCCAGTGAAAGAGAAAAGATTGAACCAACCAAAACCAATCTCTCTTTTCTCTTTCCAAATTTTTGCAGTTTCTTTCTTTGTTTTTTATTATAGATTACTGATAACTAAGTTAGATGGGGAGGTTTTAGAACTATTGGATTCCTATGTTTCTTGCATTCACTTCTTTTTATTTCACTGACATGATGAGTTAGGAATTGCAAAAAGTCCAGATTTGATGTTATTGAACAGTACTTTGGATTTATAAGAAATTACACAGCTTCTTAG

mRNA sequence

ATGTTAACTACACGTTTGTTTTCCAATGACAAAACAAACAAACAAACACACTTGCCTGCATTTTCTGCATTCCAACCCACCAAACACAAAACCCTCAACTTCCCCAAATGCTCATTTTTTACTCCAAATCAGATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAATGGATTACTAAATTTGTTTAATTTTTGTATACCCCCTTTTTCTTTTGTACAAACATCTTAGAGTGCCAGTGAAAGAGAAAAGATTGAACCAACCAAAACCAATCTCTCTTTTCTCTTTCCAAATTTTTGCAGTTTCTTTCTTTGTTTTTTATTATAGATTACTGATAACTAAGTTAGATGGGGAGGTTTTAGAACTATTGGATTCCTATGTTTCTTGCATTCACTTCTTTTTATTTCACTGACATGATGAGTTAGGAATTGCAAAAAGTCCAGATTTGATGTTATTGAACAGTACTTTGGATTTATAAGAAATTACACAGCTTCTTAG

Coding sequence (CDS)

ATGTTAACTACACGTTTGTTTTCCAATGACAAAACAAACAAACAAACACACTTGCCTGCATTTTCTGCATTCCAACCCACCAAACACAAAACCCTCAACTTCCCCAAATGCTCATTTTTTACTCCAAATCAGATCTGTAAACTCTCACTCATTATGAAAATTCCTCGGACGATTGGAGCTCTTGTCTGTCTCATTGCCTTGGTTCTCATCTCTATATTCATCTGTTTCCCCATCAGAATCCACCATCACAGATCTACCCATCTTGTTCCCACTGCAGCTCTAATTGAATCAAGAAGATTGCTCCTTTCTTCACTCTCCTCATTCTCCATTAATGGGAACAAGATGAACAGTAGTAGATCTACAGAGGCAAGTCTAAGAGTGGCGCCACCCAGCAAATCAAATCCCACGCAGAACAAGTAA

Protein sequence

MLTTRLFSNDKTNKQTHLPAFSAFQPTKHKTLNFPKCSFFTPNQICKLSLIMKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSINGNKMNSSRSTEASLRVAPPSKSNPTQNK*
Homology
[Close]
BLAST of CSPI04G13630 vs. ExPASy TrEMBL
Match: A0A0A0L1X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290180 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 52  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 111
           MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN
Sbjct: 1   MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 112 GNKMNSSRSTEASLRVAPPSKSNPTQNK 140
           GNKMNSSRSTEASLRVAPPSKSNPTQNK
Sbjct: 61  GNKMNSSRSTEASLRVAPPSKSNPTQNK 88

[Close]
BLAST of CSPI04G13630 vs. NCBI nr
Match: KGN54151.1 (hypothetical protein Csa_017955 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 2.6e-36
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 52  MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 111
           MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN
Sbjct: 1   MKIPRTIGALVCLIALVLISIFICFPIRIHHHRSTHLVPTAALIESRRLLLSSLSSFSIN 60

Query: 112 GNKMNSSRSTEASLRVAPPSKSNPTQNK 140
           GNKMNSSRSTEASLRVAPPSKSNPTQNK
Sbjct: 61  GNKMNSSRSTEASLRVAPPSKSNPTQNK 88

[Close]
BLAST of CSPI04G13630 vs. NCBI nr
Match: KAG7035836.1 (hypothetical protein SDJN02_02635, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-04
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 83  HRSTHLVPTAALIESRRLLLSSLSSFSINGNKMNS----SRSTEA-SLRVAPPSKSNPTQ 140
           H S HL PT  +   R LLLSSLSSFS N NK  +    ++S +A SLRVAPPSKSNPTQ
Sbjct: 6   HESVHL-PTPRIESRRLLLLSSLSSFSTNRNKTKTGSTGAKSADATSLRVAPPSKSNPTQ 65

[Close]
BLAST of CSPI04G13630 vs. NCBI nr
Match: KAG6605894.1 (hypothetical protein SDJN03_03211, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 3.4e-04
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 83  HRSTHLVPTAALIESRRLLLSSLSSFSINGNKMNS----SRSTEA-SLRVAPPSKSNPTQ 140
           H S HL PT  +   R LLLSSLSSFS N NK  +    ++S +A SLRVAPPSKSNPTQ
Sbjct: 6   HESVHL-PTPRIESRRLLLLSSLSSFSTNRNKTKTGSTGAKSADATSLRVAPPSKSNPTQ 65

The following BLAST results are available for this feature:
BLAST of CSPI04G13630 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G13630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1X31.2e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G290180 PE=4 SV=1[more]
BLAST of CSPI04G13630 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54151.12.6e-36100.00hypothetical protein Csa_017955 [Cucumis sativus][more]
KAG7035836.13.4e-0461.29hypothetical protein SDJN02_02635, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6605894.13.4e-0461.29hypothetical protein SDJN03_03211, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI04G13630 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G13630.1CSPI04G13630.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane