CSPI04G13240 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G13240
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr4: 11338281 .. 11338487 (+)
RNA-Seq Expression	CSPI04G13240
Synteny	CSPI04G13240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCAAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAAT

mRNA sequence

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCAAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAAT

Coding sequence (CDS)

ATGGAAAAAATTGAAGGGTACGAGAGTGATCGACCAGAAAACAGCAGGGGAAGGTGGAGATGGCGAAAAAATGAGGTTAACGCCGCTGAACAACCAAATAATTGCAGAAATGGTTGGCCCCAAAAGGAAATGGAAAGAGAAAGAAGAAGGAATGGGCGTGTGTCGGGTTTAGATTGGAACAACAAAAGGGTTAAGAGTCAAAGAAAT

Protein sequence

MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWNNKRVKSQRN

Homology

[Close]

BLAST of CSPI04G13240 vs. ExPASy TrEMBL
Match: A0A0A0L1S9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285720 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.8e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60
          MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN
Sbjct: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60

Query: 61 NKRVKSQRN 70
          NKRVKSQRN
Sbjct: 61 NKRVKSQRN 69

[Close]

BLAST of CSPI04G13240 vs. NCBI nr
Match: KGN54096.1 (hypothetical protein Csa_018092 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 7.9e-31
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60
          MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN
Sbjct: 1  MEKIEGYESDRPENSRGRWRWRKNEVNAAEQPNNCRNGWPQKEMERERRRNGRVSGLDWN 60

Query: 61 NKRVKSQRN 70
          NKRVKSQRN
Sbjct: 61 NKRVKSQRN 69

The following BLAST results are available for this feature:

BLAST of CSPI04G13240 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI04G13240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1S9	3.8e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G285720 PE=4 SV=1	[more]

BLAST of CSPI04G13240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54096.1	7.9e-31	100.00	hypothetical protein Csa_018092 [Cucumis sativus]	[more]

BLAST of CSPI04G13240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G13240.1	CSPI04G13240.1	mRNA