CSPI04G12650 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G12650
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 11002633 .. 11003606 (+)
RNA-Seq ExpressionCSPI04G12650
SyntenyCSPI04G12650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGAGAATTACGAACACATCTTCCGCCCCCAATTACCATTTCATCGTCACCTCCCTTTTTGCTTCCTCCCCTCGCTTCACTGCAGCCAAAAGCTTCGTTTCCTCCACCCTCCCACTCCCACTCAATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGAGAATCCGCTCCGATCCTCTTCGCTTTGGTGTTCTATCCTCTGCGCACATTGATCTCTCCATTGTTTCTCGTTTTTAATCTGATTTGTTCATCGGATTACTATTCCTCTAATTCTTACAGTAATCCGGTCTTTTTTTTCCTTTTTTTATTTCCTCTTTTATCTTTTTTTTGTACCGCGTCAGTGACGTAAAGAGCGTTTGGCAAATCGGATGTTTTTTTTGTACCTGTTTGTTCGTATTTGATTTATGCGTAATTTGTCTCTTGGTTGAATCGATTCGGTGTTTTTAATTGTTTTGGCATCGATTGATAGGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAATCTTTGACTAATACTGGACTTAAAACTCACCAATCTTTTTAAATTTCCACTCTTTCTTTTATATCAAATTCTTTTGAACGAAACCGATTTCTGAGAGAGATTGATCGTCTCTAGCGTTTTGGAATTACAGTTTGTTGCCCATTTTTGTCCACAATCAACAATTTCCTCTTAGAAATTGGAATCAATTTCCTGACAAATAATTCATATTTGGTATCACTGATTAAAAAATTTATCAGAACCGGAAGCAGAAGCAGATGCATGATTCCAATTTCAAAACAAGTTTATTACTTACTCGCTCATAGAAGTGG

mRNA sequence

GTTGAGAATTACGAACACATCTTCCGCCCCCAATTACCATTTCATCGTCACCTCCCTTTTTGCTTCCTCCCCTCGCTTCACTGCAGCCAAAAGCTTCGTTTCCTCCACCCTCCCACTCCCACTCAATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAATCTTTGACTAATACTGGACTTAAAACTCACCAATCTTTTTAAATTTCCACTCTTTCTTTTATATCAAATTCTTTTGAACGAAACCGATTTCTGAGAGAGATTGATCGTCTCTAGCGTTTTGGAATTACAGTTTGTTGCCCATTTTTGTCCACAATCAACAATTTCCTCTTAGAAATTGGAATCAATTTCCTGACAAATAATTCATATTTGGTATCACTGATTAAAAAATTTATCAGAACCGGAAGCAGAAGCAGATGCATGATTCCAATTTCAAAACAAGTTTATTACTTACTCGCTCATAGAAGTGG

Coding sequence (CDS)

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Protein sequence

MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQQLEKIRMDTTDQLAA*
Homology
[Close]
BLAST of CSPI04G12650 vs. ExPASy TrEMBL
Match: A0A0A0L0C4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.8e-37
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 76
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

[Close]
BLAST of CSPI04G12650 vs. NCBI nr
Match: KGN54032.1 (hypothetical protein Csa_021665 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 1.8e-36
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 76
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

[Close]
BLAST of CSPI04G12650 vs. NCBI nr
Match: KAG6605847.1 (hypothetical protein SDJN03_03164, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035795.1 hypothetical protein SDJN02_02594 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 62/75 (82.67%), Postives = 65/75 (86.67%), Query Frame = 0 

Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCL H E DRFDDFVCCSGCGKVLGQFFGGKYIDHSKP+LG  TKLKKRK EKKQ
Sbjct: 1  MLHCSHCLIHCEADRFDDFVCCSGCGKVLGQFFGGKYIDHSKPMLGKDTKLKKRKTEKKQ 60

Query: 61 QLEKIRMDTTD-QLA 75
          + EKI MD+ D QLA
Sbjct: 61 KHEKIEMDSADLQLA 75

The following BLAST results are available for this feature:
BLAST of CSPI04G12650 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G12650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0C48.8e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1[more]
BLAST of CSPI04G12650 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54032.11.8e-36100.00hypothetical protein Csa_021665 [Cucumis sativus][more]
KAG6605847.11.3e-2682.67hypothetical protein SDJN03_03164, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI04G12650 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 48..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..75

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G12650.1CSPI04G12650.1mRNA